AMCG00019516


Basic Information

Item Value
gene id AMCG00019516
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25441319 ~ 25466929 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019516
ATGCCTCCAGTGAAGATATCTTTGCTCTGTGTGCACGCAAGCCTGTCAGGCGAGGCAATGCTCATGCGTCTGGAGCACTTTAGTGGAGGGCTGCTGCCAAAAGATGGCACCCCTACAATGTTTACTGAGTCTAGGAAAACCATTCAAGAGAAGCCATCCAGAAAGCAAATCGGCCAGCCAGCGAATCACGACACCAGGAAAGACTGTCTGCCAACAGGGAGCAGCATCACAGAGAGTGAACTATTACTAGAGtccTTGAGTGGATTTGCACTTGTGGTGAGCACAGATGGAATGATATTTTATGCCTCATCCACTATTGTTGACTACTTAGGCTTCCATCAGACTGATGTGATGCACCAGAATGTGTTTGATTATATCCATGTGGATGACCGTCAAGAGTTCCGAAGACAGCTCCACTGGGCCATGAACCCGCCTGCACAGGTGGCCAGTCAGGACCAGCAGCTAGCAGCAGGGACTGGTGAGGAGTTTATTCTCAGCAGTCTGTTCAACTCCCAGGAGTCTGATGGCATTCCTTCAGAGTTCTCCTCCTTTCTCAATCGTTGCTTCATCTCCCGCGTGCGTTGCCTCCTGGACAGCACCTCAGGTTTTCTGACGATGCAGTTTCAAGGCAGGCTGAAGTTCCTGTATGGGCAGAAGAAGAAGGCTGCATCGGGGGCCACCCTGCCCCCCCAGctggctttgttttgtgtggccGTGCCTCTGCTCCTGCCCTCTATCAcagagatgaaaatgaaaagtctCATCATGAGGAATAAGCACAAGGCAGGAGTCATCGCCTCGTTAGAAAACAAAGTGAGCATACGCAATACAATTCGGAAAAAGGATAATGAAGAAgagaatacaaacaaacacccTAATCCTTGCTTTTCCTGTGTGGCAGCATTGAATAATGGAGAAAACAGACTTCCTGTCTTCAGAGTTCTTACAAAAGAAGATCAGTGGGTTTGGGTGCAGACTAATGCTCAGCTTGTGTACAGAAACGGATGCCCAGAATGTGTCATTGTCTCACAGCAGGCTgcaaaTGACAAAGAAGACGGTATTAAGAAGCATGGAGGAACTGGAGGAATGAGTGACGGTGGGGAGGTTTTGCTGCTGAATTGCTCCAATACCATGTCTGGACAACTTCGCCATCACACCCCCTGGACACCAGTCACAAAAGACGAAATGAAACACAAGAtggaaatgtgtaaaaatgaaggATTTTATACCCAAGAAGAGCCATTAAATTTCTGCAAAACGTCCATGGGTGGGCAAAAGGCTCACGGTGTAGAAAACCCGTGGACCATGAGGCTCGCAACTGGACCAATAAGAGCCGGCCAAAACATAAACCACCTTCCAAGCAGGGTAGGAAAATCCAGTCATTTCGGAAAACCTGGCGCTTATAAAATGTCTCCAAACTGTCATAATGGCAGGATGGATGGTGGCCTAGCTAAACTTTACAGCAATCTGCAAAATCCAGACATGGACGGCTATTGCACCGAGggtattaaaacagaaaactcGTATATGCCCCACGCAGAGTGCTATGACACCCACATGCTTTCTGAAGCGCCCATCAAGATAGAGCAGGACTCCGACTCCGAGAATGGCTGTGATATGTACGGCATGCCCCAGAACCGAGGGTGGATGTGCAAAGAGCACGTGGACAAGAGGTACAGCATGGGCTACGCTGAAGGGGTGCAGCTCAAGACTGAAGCAGACTACTATGAGCAATATTCGCCCTGTCAAAAGAACAAAGCTGCCCCGCAATTCAACGGCCACTACCAAAACATGTGTGCTGGGAACAGGCCGCTGAAATGTGTCCTGAACAAGGACTTGGCCCATTTCAGTCCACAAAGACTGTCTCACTCTGACACCTTGGGTAGCAATCAGAGCGCCAACTGCATGGACAGCCACATGTACGGGAACAGCGCCATGGATCACAAAGGCTACGTCCAGCAGGATTACAAACTGACCTATGAGTTCAAAAGCCACCAACTGGTCCACTCTATCAAGCGTGAGCCAATGGACTCGCCACCGTGGTCTGATGGAAACCAAGACATCATCCAAACGTCTTTACAGAGAAATATCATGCCCAACTGCGTCATGAATTCAGGTGCTCATAAATCCAACCCCTATGCCTACTTACAATAA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K09094 AHRR, AHH; aryl hydrocarbon receptor repressor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019516 True 2154 mRNA 0.49 8 25441319 25466929

Neighbor

gene id symbol gene type direction distance location
AMCG00019517 NA coding upstream 33434 25373946 ~ 25407885 (+)
AMCG00019515 NA coding upstream 96243 25344822 ~ 25345076 (+)
AMCG00019513 NA coding upstream 97632 25310759 ~ 25343687 (+)
AMCG00019514 NA coding upstream 141700 25252179 ~ 25299619 (+)
AMCG00019508 NA coding upstream 227607 25169668 ~ 25213712 (+)
AMCG00019519 exoc3,LOC107757821,LOC107656144,LOC106569216 coding downstream 13490 25480419 ~ 25515290 (+)
AMCG00019520 pdcd6,LOC106579627 coding downstream 59302 25526231 ~ 25536916 (+)
AMCG00019518 NA coding downstream 72804 25539733 ~ 25559090 (+)
AMCG00019522 NA coding downstream 92901 25559830 ~ 25560291 (+)
AMCG00019523 bmp6,LOC107664667,LOC107678510,LOC107730008,LOC107382712,LOC106530850 coding downstream 121061 25587990 ~ 25601445 (+)
G34742 anks6 non-coding upstream 93591 25342261 ~ 25347728 (+)
G34704 NA non-coding upstream 319941 25121170 ~ 25121378 (+)
G34695 NA non-coding upstream 337447 25102389 ~ 25103872 (+)
G34632 NA non-coding upstream 1113300 24327440 ~ 24328019 (+)
G34621 NA non-coding upstream 1201506 24239416 ~ 24239813 (+)
G34834 NA non-coding downstream 784495 26251424 ~ 26344732 (+)
G34838 NA non-coding downstream 831592 26298521 ~ 26300352 (+)
G34863 NA non-coding downstream 1048716 26515645 ~ 26515916 (+)
G34893 NA non-coding downstream 1651595 27118524 ~ 27156206 (+)
G34912 NA non-coding downstream 2013392 27480321 ~ 27480677 (+)
AMCG00019496 NA other upstream 1221328 24215877 ~ 24219991 (+)
AMCG00019492 NA other upstream 1354838 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 1745518 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 2193220 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 2237069 23185816 ~ 23204250 (+)
AMCG00019535 NA other downstream 3146326 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 3834026 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 6843108 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 6857471 32324400 ~ 32392976 (+)
AMCG00019638 LOC107757182 other downstream 8987280 34454209 ~ 34578440 (+)

Expression


Co-expression Network