AMCG00019518


Basic Information

Item Value
gene id AMCG00019518
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25539733 ~ 25559090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019518
CTGGGACACTATTACAACGTATTTGACTAGGCGATACAACTTTATAATTGCAACTTTAAAGCAATCTAGATCTAAGAGCAGGTACATGTTAACAGATTGTACTAACATTGttaatcacaataaatacagaatagtGACTAAGATATATGTTAATTCTTCGTTTTCTTTCGTTGAAGAATCTGTTAAACTTTCACAGGTAGGAATCACTGATTTGTAATGTCGCTTATACTTGGTCGTGTGATTTGTAGTagacaattaaaacacagcCTCAGCACTGGATCCTCGATAATAATACGGGCTTTGGGGGAAAAAACGACCCCAGCTGGATTCAGCACCTCTTGccaaaaccagcaggacacAGCCGTCAAGCAGAATGTGGTGGCCGAGAGAAAGGGCTCCATTCTGACGATCGGCATCAACAGGCCCGAGGTCAGGAATGCAGTGAACCAGGAGACGGCACGGCAGCTGGTAGAGAACTTCGCCGTGTTTGAGACGGACCCCTCCCTGACAGCGGCCGTCTTCTATGGAGTAGgaggGAATTTCTGCGCTGGTTACGATTTGAAAGAGTTGGCCCATCACTCAGCTCCGCTTAAATGGGAACAAGATGTCACTAAAAGTCCTGGTCCGATGGGCCCTTCTCGCATGCAGTTCTCCAAACCCGTGATCGCTGCCGTCAGTGGCTATGCCGTCGCCGGTGGTCTGGAGCTCTCCCTGCTGGCTGACCTGAGAGTGGTGGAGCACAGTGCCATCATGGGGGTTTTCTGTCGGCGCTTCGGTGTTCCTCTTATTGATGGTGGCACTGTGAGATTACCGCGCCTCATTGGCCTGTCTCGGGCTCTGGACCTCATTCTGACTGGACGGCCCGTGGATGCACAGGAAGCGCTTGCATTTGGGCTTGCAAACAGAGTGGTTCCTGATGGCGAAGCCCTGCAGTGTGCTCTGGACCTGGCCGAGCAGATCTCTGCATTCCCCCAGGAGTGTCTGCGTGCGGATCGCGCCTCGGCTTACCACAGCCAGTTCGATGCCCCCTCTTTCACCCAGGCCATGCAGTTTGAGTTTGAACACAGCCAGCACGTTGTTCAGAAGGAGTCTATTGCTGGTGCCAATAGATTCAGCTCGGGCACTGGAAGAGGAGGAAAGTTTTCTTAACACACTTTACACAGTTATATATAGAAAGGTATGTTAAGACAAATCGAGAGATAATGTAGTCACCCTTTCTTTCCTgtaggtttttctttttcttaagcAGTAAATGGTGTTTGTAAAATGCTTTGCATCTGCTGTGGCTTGGTGCGGATATAGGTTGGGAACTCCGAGTGAAAGGCGGTTCCAGTCAAGTAATCTGGGGAGGGGAACTGGCTGGAGCAGATTCACTCTCTGACCACACCTGATGAGCTCCAATCCCTGATAAGGCCTGCCAGACACCATTGTTGGTTTCAGGGTAACTCCACAGAATCTGCTAATTAGGGTGTAAAAGGACCTGTCTAGACTGTAAAGTCACAGGACCTACATCTCTCATCTGTACTGTTTCCTCTAACAGGCACAGTTTACTGCAGTAGTCAGCTGAAGGTTGATATAAATGTTACAGATTAGGTACAGTTGAGGaagattaaattgtttttattagttttatatgTGGCTATGAGAGAACCTGCTGACAGAATAAAATGGCCACATTGAAAAGCTTTTAACTCATTTTAGGATTGCAAAAACACTTCACAGTAAATCCCGACAAATCTGTGgaatatacagaaaaacacacacatctctggCATAATCCGCTCCGCTACAGACCTTACAAAAGCATCAGCAGGTCCACTGGGTATTAATCACTATGTGAGATGTTAAATAAGTCTTACATTATTGGTCTGTAGCATATGGAATCAAATGGCTCTGAAGAACTGTAcctaaatattatttgtattaataattctGTGTTCTTGAGGTTGTATTGAAAGCACAgtgatgaatatttaattttcatagaGAAAAGTTAGAACTCCAGTTTAACTtctgtataaaatgcaaatttatacttaatttgaaaggaaaatcatGCAGACTCTGACCTTTCAGCTTAACTAAACATGACATCCATCAATTCACCATCTTTGTGGGATATTTATTGgggttgaaaaataaatttctGTAAAGGGGTCGGACCCTAATCCTGCCCAGACCACGTATGAATATAGCCCGGCCTTTGATCTTATTAGGGTTCAGCCAAAGCTGTTCAATCTTATTAAATCGAATCTGATGTAGGTTGTTActcattacaattattttaagtatttcagTGTCAATGCAGAATTTTGATACTTCAGTTCACTTTACTAGAAACAcagaattaagaaataaatctgCAGTAACATGAAAGAAGCCCTAGatgatttaaattttaaaggTGTGTGGAAATTGGCCcatttatgtataatttatattttacaaatccaTTTATGTAGATCAAATATGATACCTCTCCTTCTAGTCTAGACTGCTTGAAACGATGGACCTCAGCCAGCACTTTTGATACCATCTGTGGCTTTGATGCAGTGGTTTGTACTTCTGAAAGATAAGATTTCTCCCAAAATGATAAGAATGCCTATCACAGGATCTGAGAAAGAGCAGACACAACACAGTATTCCCAATGGAGAcgccttctttttcttctcaaagGGTAAATACAACAAAGTCAACAATACACTAAACTGCAAGCCAAACATGCCCGGCTCAAAGCTTTATCTACTTcttaaaaatgtgattatataCATGGATTCAAATTAGTGTTTCAAGGAATCCCAACTTTAGTGCATGACGTGTTTTATACATCTTTCAAAAGATATGTAAAAAGCTTTGCAGAAAGACAGTTTCAGCTTTACCGAcagttttcaattaatttaattcctggAACAGATTGAGTTGTTATAACTGTATGTCAATGATTGTTGCTATATTAACcatacaatagaaaaaaaaaaaaaaactataatctCTTGATAATGGCACACAAAGATGGGAACCTCACGCAAACAGCAGAGCCCAAAGTAATCCCTCCACATATGGTTTTCTGAATTGCACAAATTGCTTCCAGATATAACACCTTACTGTAAAAGTGTTCAGTCACTGTAAACGAGAGGAGGTAttacttcattttaatttcacaaaactCCACTGCCAGAATAAATCTGGATCATCTTTGCACCCACCATTCTGTTATTCTTACTAATTGCATACTTTGCAGACTATGACTTGTTTTTGGAATTAGATGCGACAGTATATttagcaattattattattgtttaattaaatgcattacaattgGAGAAGTACACATGCTTTAATCGCTTAGTTTCTATGAGCATTGTACAGGCCACAAACCAATGTCTTTGCAGAAGTCCTCCTTAAACTCATCTCTAAACCAAAATGATATGTGACACAAGCAAATGCAAGAAACCGGtacttaaaaagaaacagaaatgtgggtctggaagaaagaaacattaaatcCAGTCTTTCTATCATTGTAGCTGCCAGCCATTGTAAAATCAACAATCCAGTTAagaagttttgtttgttttcacatccAATTTCTTGCAGTTATACAGATGTATTACCTTAAGTTCATGCACATACAAAATCAGGTGGCTCAATAATATGAAGATATTAACAGCCCTGTTGATGTAGTATTATCCATTCCTCtcactttacattacatttacatgaacTGCTAGTGAATCAGTAATTTTGTGGAATGCTTTACAATTGTTTTCGGAAGAGATACAGGTTTAAACTTCCAATCATGGGATAATTTATTCCTTGGGAGTCCAGGTGTGGATGAATGGACACTGAAATTGATCATAATTGCAGAGCACTGTTTtatggtttctgttttaaatgtctaACCCTTTTGTTGCTGATGTGACATGGGGATGGAGCAGAGAATCTCATGCATGGAGCTGATAATCTTTCATATACAGCATAAGAtgagcaaatgttttattagcCTGCTTATCTTTCTTTAAAGATTAGATAACAGCCTGGGGTTTTTAATGTGTGGAATGTTTGTATGCAAGAGTTGCAGGTCTTGCTATTTCTCTGGCAATGTTCACTATCAGTGCTATTACAGAATAACAATTCTGTAATTGGATTACACATTTGAAGACAGTTTTCTTTGAAACTGTATGATTTTTGAAACCGAGAAGCAAATGCACAGATTAACCCTTCTAAGCATATTTAGTAAgcatgcattcatattttgtctatttgtttATACACCTACATTGCCATggatttaataaatacaattttattatagataatattcttaaaaactttaaaataaagaattcttgcttttctttccttcaccTCAAGGGGTCCTCCGTTGTCTGAAAAAAGTGAATGTGCAACATAACTTGGTATCTGCATTGAGGTCTAATTTGAGTTGTGCTGTCACAGCGCATAAACTGTGTAACCAGCagtaagaaattaaacattaacaagtTCTCTTGCAGGGCGTGTGTGGCTATTCAGACGtcaaatacactacatattttacatttgtttccaattaaaatctattaagaaataattgaattgacattgacatttagTTCCCAATCAACAGGTTGATTAAACAGGTGAAAATATACACCTACACGCTTTAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01692 paaF, echA; enoyl-CoA hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019518 True 4667 mRNA 0.39 6 25539733 25559090

Neighbor

gene id symbol gene type direction distance location
AMCG00019520 pdcd6,LOC106579627 coding upstream 2817 25526231 ~ 25536916 (+)
AMCG00019519 exoc3,LOC107757821,LOC107656144,LOC106569216 coding upstream 24443 25480419 ~ 25515290 (+)
AMCG00019516 NA coding upstream 72804 25441319 ~ 25466929 (+)
AMCG00019517 NA coding upstream 131848 25373946 ~ 25407885 (+)
AMCG00019515 NA coding upstream 194657 25344822 ~ 25345076 (+)
AMCG00019522 NA coding downstream 740 25559830 ~ 25560291 (+)
AMCG00019523 bmp6,LOC107664667,LOC107678510,LOC107730008,LOC107382712,LOC106530850 coding downstream 28900 25587990 ~ 25601445 (+)
AMCG00019526 NA coding downstream 611159 26170249 ~ 26193526 (+)
AMCG00019528 cdh18,LOC102798556,LOC102310872 coding downstream 1290235 26849325 ~ 26857024 (+)
AMCG00019531 LOC106578564,LOC106590046 coding downstream 1338577 26897667 ~ 26900729 (+)
G34742 anks6 non-coding upstream 192005 25342261 ~ 25347728 (+)
G34704 NA non-coding upstream 418355 25121170 ~ 25121378 (+)
G34695 NA non-coding upstream 435861 25102389 ~ 25103872 (+)
G34632 NA non-coding upstream 1211714 24327440 ~ 24328019 (+)
G34621 NA non-coding upstream 1299920 24239416 ~ 24239813 (+)
G34834 NA non-coding downstream 692334 26251424 ~ 26344732 (+)
G34838 NA non-coding downstream 739431 26298521 ~ 26300352 (+)
G34863 NA non-coding downstream 956555 26515645 ~ 26515916 (+)
G34893 NA non-coding downstream 1559434 27118524 ~ 27156206 (+)
G34912 NA non-coding downstream 1921231 27480321 ~ 27480677 (+)
AMCG00019496 NA other upstream 1319742 24215877 ~ 24219991 (+)
AMCG00019492 NA other upstream 1453252 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 1843932 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 2291634 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 2335483 23185816 ~ 23204250 (+)
AMCG00019535 NA other downstream 3054165 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 3741865 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 6750947 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 6765310 32324400 ~ 32392976 (+)
AMCG00019638 LOC107757182 other downstream 8895119 34454209 ~ 34578440 (+)

Expression


Co-expression Network