AMCG00019519 (exoc3,LOC107757821,LOC107656144,LOC106569216)


Basic Information

Item Value
gene id AMCG00019519
gene name exoc3,LOC107757821,LOC107656144,LOC106569216
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25480419 ~ 25515290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019519
ACCAACAACCAACAATCAAGAAGGGTAGGATTTTCTTGAAGTAAAAAATAtggatttattgtattaatgcaaGGCGTTCATTAACGGTATATTCTCAAACACAACGGATATTAATCGCAGCTGAGGGTCTGCTGTCACAAtggaggagacagacagagaggctgTGGCCACGGCCGTGCAGAGAGTGGCCGGGATGTTGCAGCGGCCAGACCAGCTGGATAAAGTGGAGCAGTATCGCCGGAGGGAGGCTCGCAAGAAGGCCTCTGTGGAAGCCAGGCTCAAGGCAGCTATCCAGTCTCAGCTGGACGGGGTACGGACTGGTCTGAGCCAGCTGCATAACGCCCTAGTGGATGTCAAGGACATCCGCTGCTCTCTGGCAAACGTCAGCAATGACTGGAGAAAGAGCATCAACACCATAGAGAACCTGAAAGATGTGAAGGACGCTGTGGTGCAGCACAGTCAGCTTGCCGCAGCTGTGGAAAACCTCAAGAACATCTTCTCAGtgCCGGAGATAGTCCAGGAAACCCATGATCTGATCGAGCAGGGGGAGCTGCTGCAGGCCCACCGCAAACTGATGGACCTTGAGTGCTCCCGGGACGACCTGATGTACGAGCAGTACCGCATGGACAGCAAGAACACTCACGACATGAACCTCATCCGCAGCTACTTCGGGGAGGTGCAGAGCCTGTCCGAAGAGCTGGCCAAGCAGCTGTGGATGGTCCTGCAGAGGTCCATGGGCACGGTGAGGAAAGACCCCACCATGCTGGTGTCAGTGGTGCGCATCATCGAACGAGAGGAGAAGATCGACCGCCGCATGCTGGACCGCATGAAGCAGACAGGCTTCATGCCCCCGGGGCGGCCCAAGAAGTGGAAGGAGAAGATGTTCGAAGTGCTAGAAGGGACGGTGAGCTCCCGGATCGAGGGCACCCAGTCGGAGACCCGGGAGTCGGACAAAATGTGGTTGGTGCGCCTCCTGGAGATCACCCGCAAGTATGTGCTGGACGACCTCATTGTGGTGAAGAACCTGATGGTCCAGTGCTTCCCCCTGCATTACAACATCTTCAACGTCTTCTTCAATCTCTACCACCGGGTCCTGTCTGCTCGAGTCCAGGAGCTGGCCTCAGAAGACCTGGAGGCCAATGAGATTGTTTCTCTTCTGACCTGGGTGCTCAACACATACACAAGtgTGGACATGATGGGCCACCCAGAACTGTTTGTGGAAGTAGACGTCAACAGCTTGGAGCCGCTTCTCCCCCAGCAGGTGGTAGATGAGCTTCTCAGCAAGTACATCCAGACCTTAACATCAAATATCACTGGTTGGCTGCGCAAGGCACTAGAAACAGACAAGAAGGACTGGAAGAAGGAGACTGAGCCAGAGGCCGACCAAGATGGCTACTTCCAGACCACTCTGCCTGCCATTGTGTTTCAGaTCTTTGAGCAGAATCTACAAGTTGCCGCCCAAATTAACGAAACGTTTAAAGAGCAAGTGTTGCGACTGTGTCTCAAACAGATGAACTCCTTCCTCATCAGGTACCGAGAGGAAGCGATCGCCCTCAAGGAAGATCATTTGAAAGATCGAAAGCTTCCACATTTCTATACTCAGTATATGATTGCGATCATCAACAATTGCCAGACTTTTAAGGAATCCATTAACAGCCTAAAGAAAAAGTACTCGCATACAGCGGAAAATACCCAAAACGACGCTGCAATTGAGAAGACACTGGGTGACGTGGCCAAGGATGGATGCGCGTTCCTCCTCGACGAGGTCTTCATGGACCTGGAGCAACATCTTAATGAGCTGTTGACCAGGAAGTGGCTGTCGGGATCTAATGCAGTGGACACCATTTGTGCGACTGTGGAGGATTACTTCTATGATTTTGCTAAGATCAAGAAGCCATACAATAAGGCaagctgtttaaaatgtATCGATGGGACggtctttgatttgtttcagGAGATAACTACGGAGGCTCATCGCAGAGTGGTCATCGAGTACTTAAAGGCTATAATGCAGAAAAGGATCTCCTTCAGAAATGCCGAAGAACGGAAAGAGGGAGCGGAGAGAATGATCAAGGAAGCGGATCAATTGAAATTCCTATTCAGGAAACTCTCAGATGGCGAGGCCGCTGACAGTCTGTGCGATGCCATTGCTGCCATAGCCGAAGTGTTCAAACTCACAGACCCCACCCTACTGTACCTGGAAGTATCGACACTCGTCTCCAGATACCCCGATGTCAGGGAAGAACACATCACGGCCTTGCTGGCTGTGCGAGGGGATGCCAGTCGGGACATGAGGCagatgatcattgaaactctgAATCAAAACAGGCCCGCGTCAACTGCGAACATACAGCCCATCTTCAGGGATATAACTGTTCCGAGTATGACAGTGCCTAAACTACTCAAATAAACGAGACTGCACCAGGCCTGTATGAAGCACGGGGGAACACGCAGGTTtaaatgaattgtatttttgtatgcactTTGAACTGAAAGATGAATCGGGAAGAGGAGAGGCGCAAGAATGTGTAATACCTTTGCCAAATAACAGTTCTGGGAcgtgctgttgttttttgtgttgtcttgATAACATGTTAACGTTTGATACTTGATGTACAGAGAACACACATTGTGCAGCATTGCCTTTTTCATATGTGACTTCACATCCACCCTGtaaaaaggcacattttgaaatgcttttgaggaataaaaaggaaaactctCAGTGCATGTACATGACgtttctgaaacattttgttccttagtggaaaataaaattgcttttgtCCATCCATGTTTGTGCTTTATCTCCTCTCTGTTTGCTGGATTCAGTGACTTTGAGATCCTTCAGTGCTGTTATATGGAGTCCAAAGTGAAAGGATTCTTAATGAGAGAATCAAAATTGCTTAAACAGAGAAGATTACAGGAGATTTTgaagttatttgtatttacaatcaaaaggtaaaaataattaataaacactCTTTAAAAG

Function

symbol description
exoc3 Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to be part of exocyst. Orthologous to human EXOC3 (exocyst complex component 3).

NR:

description
PREDICTED: exocyst complex component 3-like

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0000145 exocyst cellular_component

KEGG:

id description
K06110 EXOC3, SEC6; exocyst complex component 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019519 True 2992 mRNA 0.48 13 25480419 25515290

Neighbor

gene id symbol gene type direction distance location
AMCG00019516 NA coding upstream 13490 25441319 ~ 25466929 (+)
AMCG00019517 NA coding upstream 72534 25373946 ~ 25407885 (+)
AMCG00019515 NA coding upstream 135343 25344822 ~ 25345076 (+)
AMCG00019513 NA coding upstream 136732 25310759 ~ 25343687 (+)
AMCG00019514 NA coding upstream 180800 25252179 ~ 25299619 (+)
AMCG00019520 pdcd6,LOC106579627 coding downstream 10941 25526231 ~ 25536916 (+)
AMCG00019518 NA coding downstream 24443 25539733 ~ 25559090 (+)
AMCG00019522 NA coding downstream 44540 25559830 ~ 25560291 (+)
AMCG00019523 bmp6,LOC107664667,LOC107678510,LOC107730008,LOC107382712,LOC106530850 coding downstream 72700 25587990 ~ 25601445 (+)
AMCG00019526 NA coding downstream 654959 26170249 ~ 26193526 (+)
G34742 anks6 non-coding upstream 132691 25342261 ~ 25347728 (+)
G34704 NA non-coding upstream 359041 25121170 ~ 25121378 (+)
G34695 NA non-coding upstream 376547 25102389 ~ 25103872 (+)
G34632 NA non-coding upstream 1152400 24327440 ~ 24328019 (+)
G34621 NA non-coding upstream 1240606 24239416 ~ 24239813 (+)
G34834 NA non-coding downstream 736134 26251424 ~ 26344732 (+)
G34838 NA non-coding downstream 783231 26298521 ~ 26300352 (+)
G34863 NA non-coding downstream 1000355 26515645 ~ 26515916 (+)
G34893 NA non-coding downstream 1603234 27118524 ~ 27156206 (+)
G34912 NA non-coding downstream 1965031 27480321 ~ 27480677 (+)
AMCG00019496 NA other upstream 1260428 24215877 ~ 24219991 (+)
AMCG00019492 NA other upstream 1393938 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 1784618 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 2232320 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 2276169 23185816 ~ 23204250 (+)
AMCG00019535 NA other downstream 3097965 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 3785665 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 6794747 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 6809110 32324400 ~ 32392976 (+)
AMCG00019638 LOC107757182 other downstream 8938919 34454209 ~ 34578440 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G287968 NA unknown CI01000073 null 543603 ~ 557340 (-)