AMCG00019521


Basic Information

Item Value
gene id AMCG00019521
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25519027 ~ 25522993 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019521
ATGCTTTTATTCTTCTATCCCCAGGGAGCGTCCCCTTACAAGAGAGCAACATACCGCTACACTCCTTTACTGGCCTGGATTCTGACCCCAAACATTTACCTCACCCCCATCTTTGGAAAGCTGCTTTTCGTGACATGCGATATAATCTCGGCGTACCTCATGTACAGAATCCTGCGCCTCAGGGGAATGGCCACTGCCACGGCCTGCCAGTACTGTGCCCTGTGGTTACTGAACCCCCTGCCCATGGGAGTCTCCAGTCGGGGGAACGCAGAGTCTGTTTTGGCCATGCTGGTGGTTGCCACTTTGTACTACATGGAGAAAAGAAGTTTGTCCAAAGCAGCGTTCTTCTACGGGCTGTCGGTCCACATGAAAATCTACCCAGTGACCTACGCCCTTCCCATAGCTCTGTCTCACGCCTTGGGGAAAACGGGGAGATTGCCAGAACCAGGAAGGACTGGAGTCAGGACATTGCTCGTGAGATTGTTCAACAGAGACTTGCTGCTATTTGCTGCTATAGCAGGCGGAACCTTCTGTGGGCTCAGCCTACTGTTCTATTACATGTATGGCTGGGAGTTTTTAGAGCACACTTACCTGTACCATCTGACCAGGAGAGATATCCGACACAACTTCTCAGCGTACTTCTACATGCTGTACCTCACTGCGGAGAGTCCCTGGAGTCTGACCCTGGGGCTCGCTGCCTTCCTGCCccagctcctgctgctgctgctcacctCCCTGGCCTTCCACACAGACCTGGCCTTCTGCTGCTTCCTGCACACCGCGGTGTTCGTCAGCTTCAACAAAGTCTGCACTTCTCAGGCACTGTGGTTGGCACCAGCTTATTACCTGGAGTTTGAAGGCAGCAATACATTTGTTCTCATTTGGCTGGCAGGGTTACTGTTTCTgctcattaattcatttatacTTGTTCAGATAATATCCCACTATAAACccaaagagaaaatgaaatctgACTGATCTGTACTGCAGAAGAAGGATTACCAAATGTAGTGAAACCATAGTATGTGTTAAACTACCCAAGTGCGATGAGAGAGATTCAACAATCTTTCCATGTGAACATATGCAAGTTACATCCCCGTGACATATGAGCTGGGACATCCACTGTGAGAGGAAGGAAGTGTAAGAAAGATCAACGGTGAACTGAGCTTTCAcaagatatttgttttatataagcTACCACCTTGCTTTTTTCTCTTCCGTACTGTGtcaatctgttttatttatttaatcaaatttttAAGTCATCTAACTGGTTTGTTCATTCTAAACCCTCCATCTGCGACACTAAATTGTACCTTCACTTGTCTGGCTTGGTGTTTCGTGTTGTCTCCCTATGCTAACTGTCCTTCaaattaaaacttgttttttattgcaGCAAAAAGCCACggtcaattaaaaaaagcactCCAACACTTGAGTACGAAGCGTAGTACTTTTTTCTAACGTGTATGTCTTTAGTTACTAAGCCACTCTGACAATTTTAGAAAGTTCTTTTTACACTCCTATTCAAAccattttcatattaatgatTCAGTACCATCCTATTTTAAACTATGATTTCACCGCTTTCGTTTGGTTACAATatcacaattataaaatattgaaaacaaaaaaatcaggcTGTTATTCTTCCAACAGCCAGGAGATGGCAGTAAATAACAAGTAAACCGGTGCAAATCTGAACAGACTCCGATTGAGATCTGAGTTCCTTTTTCAGAACAGGTAACAAAGATGCTGTGgtgcaaaacaataaaagctaATTAGTCAGTAATTAGACAGTCTGAAGCTCCATTGTCTATCCTAAGTgtacattcaatatttaacCTTGAGTGCATTACACAGACAATTGTGTAGGATAATTCACTATTTTGTAACAATCTGtgcatttctgtctgtctgaaaGAACTCTCAGAtaagtaaaacatgtaaaatcacattttgcAGGCggacattgtttgttttaaatccagtATTTGATATATAGTGTTATATATGTGTCATATAGATTAAATATAGTGTGGTCTATAA

Function

GO: NA

KEGG:

id description
K05284 PIGM; GPI mannosyltransferase 1 subunit M

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019521 True 2049 mRNA 0.43 3 25519027 25522993

Neighbor

gene id symbol gene type direction distance location
AMCG00019509 hus1 coding downstream 360581 25152857 ~ 25158446 (-)
AMCG00019512 NA coding downstream 379710 25106292 ~ 25139317 (-)
AMCG00019511 pdia4,LOC107727231,LOC107741760,LOC107686698,LOC107695410 coding downstream 416454 25098354 ~ 25102573 (-)
AMCG00019510 ezh2 coding downstream 438317 25065546 ~ 25080710 (-)
AMCG00019502 NA coding downstream 1052496 24219089 ~ 24466531 (-)
AMCG00019524 LOC105920200 coding upstream 81909 25604902 ~ 25613129 (-)
AMCG00019525 NA coding upstream 108704 25631697 ~ 25639027 (-)
AMCG00019527 NA coding upstream 1830224 27353217 ~ 27379929 (-)
AMCG00019536 drosha,rnasen,LOC107556767 coding upstream 3137024 28660017 ~ 28711602 (-)
AMCG00019541 NA coding upstream 3195087 28718080 ~ 28826591 (-)
G34763 LOC107656144 non-coding downstream 3803 25512084 ~ 25515224 (-)
G34596 NA non-coding downstream 1372176 24146194 ~ 24146851 (-)
G34541 NA non-coding downstream 1571570 23898273 ~ 23947457 (-)
G34514 NA non-coding downstream 1876786 23610429 ~ 23642241 (-)
G34502 NA non-coding downstream 1940742 23576527 ~ 23578285 (-)
G34831 NA non-coding upstream 292700 25815693 ~ 25816056 (-)
G34846 NA non-coding upstream 650069 26173062 ~ 26211553 (-)
G34853 NA non-coding upstream 769362 26292355 ~ 26336737 (-)
G34859 NA non-coding upstream 854124 26377117 ~ 26377354 (-)
G34868 NA non-coding upstream 1147912 26670905 ~ 26676220 (-)
AMCG00019500 pign other downstream 1424363 24052011 ~ 24094664 (-)
G34470 NA other downstream 2319419 23147861 ~ 23199608 (-)
AMCG00019487 NA other downstream 2774845 22670647 ~ 22744182 (-)
AMCG00019446 ube2w other downstream 4753531 20743530 ~ 20765496 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 6064058 19442395 ~ 19454969 (-)
G35067 NA other upstream 3995003 29517996 ~ 29521984 (-)
AMCG00019556 NA other upstream 4012751 29535744 ~ 29550162 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other upstream 4115573 29638566 ~ 29645963 (-)
G35101 NA other upstream 4156236 29679229 ~ 29685302 (-)
AMCG00019597 NA other upstream 5899036 31422029 ~ 31427583 (-)

Expression


Co-expression Network