AMCG00019523 (bmp6,LOC107664667,LOC107678510,LOC107730008,LOC107382712,LOC106530850)


Basic Information

Item Value
gene id AMCG00019523
gene name bmp6,LOC107664667,LOC107678510,LOC107730008,LOC107382712,LOC106530850
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25587990 ~ 25601445 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019523
GCGTACGACCGAGAGCTCTCCCCCCAGCGGCGGCACCACAAGGAGTTCAAATTCAACCTGTCCCAGATCCCAGAGGGAGAGGCCGTCACTGCGTCCGAGTTCCGCATCTATAAGGAGTGTGTCAGTGAGGCCTTTAAAAACGAGACCTTCCACATCACCGTCTATCAGGTGGTGCAGGAGCACAGAGACAGGGATGCAGATCTCTTCCTGTTGGAGTCTCGAGAGCTGTGGGCCACGGATGAAGGCTGGCTGGAGTTTGATATCACAGCCACCAGTAACCTGTGGGTGATGAGCCCTAAACACAATCTGGGTTTGCAACTTAGTGTGGAAACCAGCCACGATTATAACAGCAGTGACCAGAAGACGGCCTGCAGAAAACACGAGCTCTACGTCAGCTTCAGAGAACTTGGGTGGCAGGACTGGATTATAGCGCCAGAGGGATATGCGGCAAACTACTGTGACGGCGAGTGTTCGTTTCCTCTCAATGCACACATGAACGCCACAAACCACGCCATCGTGCAGACACTGGTCCACCTCATGAATCCAGAAAATGTTCCCAAGCCAAGTTGTGCCCCCACAAAACTGAATCCCATTTCAGTGCTCTACTTCGATGACAACTCTAATGTAATCCTGAAGAAATACAAGAACATGGTGGTGAGAGCTTGTGGCTGTCAT

Function

symbol description
bmp6 Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including choroidal fissure; ectoderm; epidermis; fin; and ventral mesoderm. Orthologous to human BMP6 (bone morphogenetic protein 6).

NR:

description
PREDICTED: bone morphogenetic protein 6 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019523 True 675 mRNA 0.52 5 25587990 25601445

Neighbor

gene id symbol gene type direction distance location
AMCG00019522 NA coding upstream 27699 25559830 ~ 25560291 (+)
AMCG00019518 NA coding upstream 28900 25539733 ~ 25559090 (+)
AMCG00019520 pdcd6,LOC106579627 coding upstream 51074 25526231 ~ 25536916 (+)
AMCG00019519 exoc3,LOC107757821,LOC107656144,LOC106569216 coding upstream 72700 25480419 ~ 25515290 (+)
AMCG00019516 NA coding upstream 121061 25441319 ~ 25466929 (+)
AMCG00019526 NA coding downstream 568804 26170249 ~ 26193526 (+)
AMCG00019528 cdh18,LOC102798556,LOC102310872 coding downstream 1247880 26849325 ~ 26857024 (+)
AMCG00019531 LOC106578564,LOC106590046 coding downstream 1296222 26897667 ~ 26900729 (+)
AMCG00019530 NA coding downstream 1351252 26952697 ~ 26957589 (+)
AMCG00019529 NA coding downstream 1678275 27279720 ~ 27282910 (+)
G34742 anks6 non-coding upstream 240262 25342261 ~ 25347728 (+)
G34704 NA non-coding upstream 466612 25121170 ~ 25121378 (+)
G34695 NA non-coding upstream 484118 25102389 ~ 25103872 (+)
G34632 NA non-coding upstream 1259971 24327440 ~ 24328019 (+)
G34621 NA non-coding upstream 1348177 24239416 ~ 24239813 (+)
G34834 NA non-coding downstream 649979 26251424 ~ 26344732 (+)
G34838 NA non-coding downstream 697076 26298521 ~ 26300352 (+)
G34863 NA non-coding downstream 914200 26515645 ~ 26515916 (+)
G34893 NA non-coding downstream 1517079 27118524 ~ 27156206 (+)
G34912 NA non-coding downstream 1878876 27480321 ~ 27480677 (+)
AMCG00019496 NA other upstream 1367999 24215877 ~ 24219991 (+)
AMCG00019492 NA other upstream 1501509 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 1892189 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 2339891 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 2383740 23185816 ~ 23204250 (+)
AMCG00019535 NA other downstream 3011810 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 3699510 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 6708592 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 6722955 32324400 ~ 32392976 (+)
AMCG00019638 LOC107757182 other downstream 8852764 34454209 ~ 34578440 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022776 bmp6 coding NC_007135.7 CM002908.2 7861373 ~ 7935809 (+)