AMCG00019524 (LOC105920200)


Basic Information

Item Value
gene id AMCG00019524
gene name LOC105920200
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25604902 ~ 25613129 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019524
ATGGCCTCCTCCTCCGTCTTTCTGCTGGCTCTGGCCGGCTCGGCGCTGCTCCTCGGCCGGGCACTGTGTGAAGACGAAGCCGGGGACGAGCACTCGATGCATGTGTACACGGAGGACATGTTCACCAATGCCATCAAGACCAGCCCGCACTTCGTCATGTTCTTCGCCCCTTGGTGCGGTCACTGCCAGAGGCTGCAGAGCACTTGGAATGAGTTGGCAGAGAAATACAACAACATGGATGCCCCCCCGGCGTACGTCGTCAAAGTGGACTGCACTCAGGAGGGCTCCCTTTGTTCTCAGCAGGGTATTCGAGGGTATCCCACTCTGAAGCTTTTCAGGCCTGAGCAGGAAGCGGTCAAGTACCAGGGGTCCCGTGATGCGGAGACGCTGGAGACATGGATGTTGAATACTCTGAATGATGAACCTGCTTTGCCGGAGTCTGTACTGGAGCCGCCCAAAGCACCAGAGCCCAAGCAGGGCATGTATGACCTCACTGCATCGTCCTTCAAGACACACATTGCACAAGGATACCACTTTGTCAAATTCTTTGCTCCGTGGTGCGGCCATTGTAAAGCTTTAGCACCCACGTGGGAGCAGCTGGCAACGACGTTTGAGCACTCGGACAACATTAAGATTGGGAAGGTTGACTGCACTCAACATTATGAGATTTGTTCCCAAAATGAAGTCCGTGGATATCCTACTCTCTTATGGTTTAAAGATGGAGAGAAGGCTGATCAGTACAGAGGAAAGAGGGACCTCGATTCCCTTAAGGAGTTTGTGGACAATCAACTCAAAGTCGTTGTAGAAGCTGCTGAGGAGGAACCGGCCAAAGAAGCTCCGCAGCAGGTCGAACAAATGCCTGACGAGGACGAGtCAAATGTACTGACCCTCACCGAAAGTAACTTCGATGACAAAGTGGCTAAAGGTCTTACATTTATCAAGTTTTATGCCCCATGGTGTGGTCACTGTAAGAATCTTGCTCCGACTTGGGACGACCTTTCAAAGAAAGAGTTTCCTGGGCTGACAGATGTGAAGATAGCCAAAGTGGACTGTACAGTGGAGCGCACGCTCTGCAATCGCTTCTCCGTGAGGGGCTACCCGACTCTGCTGCTGTTCCGCGCCGGACAGCAGGGCGACGAGCACAACGGAGGCAGAGACCTGGAGAGTCTGCACAGCTTCGTGATGCGCCAGGCCAGGGACGAGCTCTAA

Function

NR:

description
thioredoxin domain-containing protein 5-like

GO: NA

KEGG:

id description
K13984 TXNDC5, ERP46; thioredoxin domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019524 True 1209 mRNA 0.54 10 25604902 25613129

Neighbor

gene id symbol gene type direction distance location
AMCG00019521 NA coding downstream 81909 25519027 ~ 25522993 (-)
AMCG00019509 hus1 coding downstream 446456 25152857 ~ 25158446 (-)
AMCG00019512 NA coding downstream 465585 25106292 ~ 25139317 (-)
AMCG00019511 pdia4,LOC107727231,LOC107741760,LOC107686698,LOC107695410 coding downstream 502329 25098354 ~ 25102573 (-)
AMCG00019510 ezh2 coding downstream 524192 25065546 ~ 25080710 (-)
AMCG00019525 NA coding upstream 18568 25631697 ~ 25639027 (-)
AMCG00019527 NA coding upstream 1740088 27353217 ~ 27379929 (-)
AMCG00019536 drosha,rnasen,LOC107556767 coding upstream 3046888 28660017 ~ 28711602 (-)
AMCG00019541 NA coding upstream 3104951 28718080 ~ 28826591 (-)
AMCG00019540 NA coding upstream 3542208 29155337 ~ 29155822 (-)
G34763 LOC107656144 non-coding downstream 89678 25512084 ~ 25515224 (-)
G34596 NA non-coding downstream 1458051 24146194 ~ 24146851 (-)
G34541 NA non-coding downstream 1657445 23898273 ~ 23947457 (-)
G34514 NA non-coding downstream 1962661 23610429 ~ 23642241 (-)
G34502 NA non-coding downstream 2026617 23576527 ~ 23578285 (-)
G34831 NA non-coding upstream 202564 25815693 ~ 25816056 (-)
G34846 NA non-coding upstream 559933 26173062 ~ 26211553 (-)
G34853 NA non-coding upstream 679226 26292355 ~ 26336737 (-)
G34859 NA non-coding upstream 763988 26377117 ~ 26377354 (-)
G34868 NA non-coding upstream 1057776 26670905 ~ 26676220 (-)
AMCG00019500 pign other downstream 1510238 24052011 ~ 24094664 (-)
G34470 NA other downstream 2405294 23147861 ~ 23199608 (-)
AMCG00019487 NA other downstream 2860720 22670647 ~ 22744182 (-)
AMCG00019446 ube2w other downstream 4839406 20743530 ~ 20765496 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 6149933 19442395 ~ 19454969 (-)
G35067 NA other upstream 3904867 29517996 ~ 29521984 (-)
AMCG00019556 NA other upstream 3922615 29535744 ~ 29550162 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other upstream 4025437 29638566 ~ 29645963 (-)
G35101 NA other upstream 4066100 29679229 ~ 29685302 (-)
AMCG00019597 NA other upstream 5808900 31422029 ~ 31427583 (-)

Expression


Co-expression Network