AMCG00019525


Basic Information

Item Value
gene id AMCG00019525
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25631697 ~ 25639027 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019525
TTAAATTCAGGTACCAGATCTGACTGACATTCTGCCCTCTTTTTGGGTGCTAAACTCTTTagaaaaatccatattttagtgaatatattccaaaatgaatttgaaataaattgttGTGCAAATCCCCTGCCAGGGTTACACAGTGTGAAAGGGAACCTAATTACACAGTGTTGACCAGAACCCTCACCTCTCAGCTAGAGGCTTATTCGATAGCAgccaatcatttaaaaaacaaacaaccagaAAGGAATGTACTATCAGCCTACAATAAAGGATTTTTAAGACTCAATGGGAATGTGCTGAGTACAGCCATCTGGGTGACATGAAAAAGGATGAAGCTTGCCAGCAAGTCACAATTAACACTCAAGCAATGTCAACTTCGTTATTTAACATTTCTCAACTTTAAGCACCAAacacttggaaaaaaaatagataaatctataaataaatcattcaaatacacatgtaacCATATTATTCAGGAGTCCCCTGTCACGTTACCTGGTAGGTGCTGTTCAAGCGGCGGGAGGAGAAGCAGGCAAGAGCAGTGCCAGGGATTGTAAGGTCAGAAAGGGAGGAGAGCTGAATGGAGTGGATAACAGTTTCAAAGGCTGTAAAGAGGTCAATGGGAATTAGGATAGAGAAAAGGGAGGCAGTATTGGCAGAGTCTAGTGAATTAGTTTCAGAGAGGAGAGTATTTTCAGTGCAGTGAAAAGAGAGGAAAGGTAATTTCAGAGGGTCACGCAGGGAGTGTTAGCACAGGAATGTAGTGAACTGGCTGCTTCAGCTTTTAAGagctggggagagagagcggTAGATCTAGAGCATTGTCTGCATACACATGCAGCCCATGACCACCCCCCAGAAACTAAAGTAAAGTTAGTATGActgcttattattttgtatcaatgtgttaaTCCCTTAATACAATGTTAACATGTATTGACTGCATATATTgctctgtttaaattaaaatgtagcatttgtggctTGTAATTGTGGTAAAAGGTGTCTGGCAGCCCAGGCAGCTGTTTGACAGAAGGTTTTGCAGCCCACTGATTCATGTAAGTTGCCCACCACTGTTCTAGAGGGTTGGTTTTATGAATGAGTGAAAGGGTCATGTTAGGGGAAAACAGACCAAGAGAAGAGAGGTGTTGAGCAGGGAGgagataacaataataatagtaatctgTATTTACTGCTAAATCCTACGAATTTGTTTGTTATCCTCTGTATTCTCAGGAAAGCAAACTAAAAGACTGATACAGTGAAAACTAGTCAATtcaataataaagtacaatatccTTTCAATAATATAAAGgcatgtttattgttttcatgtaaaaataagaaacaaactgTAGATTAATAGTCTGTGGGGTGGGAGTTGCGCCCTCTAGTGGTGAGATGAAGTCTATCAGGCCTGACCCGGATATGAAAAGCCTATTGGTTGCGGAAATGACGTACTAGTCACATGACCTCAAATGCCGGAACTAATGTCCGTAGCTTCAGTGCCGAGGAGCTACTGTTTATCtcgttattttaattgaattttcaactttttaaattgtatttctttccctGCAGTATTGGTATAACACAGCCAAAGTAATGTTATCCAGAAGTGAGCTGAAGCGATGAgtccacacttgaaatcaagaCAAACCGGTCATTTACATTTGGAATGAATCGGTACGAATAAATAAGGACTCAAAAACTGCGACAGTAATTCGTGACTATGGAGAAGATAGCAAAAGATGTTGGGGACGTTCAGTCCAGGTTGTTGGATCACAGGCCAGTTATACAGGGTGAGATCCGTTATTTTGTGAGAGAATTTGAAGAGAAGCGGGGATTTAGGGAGACAAGATTGCTTGATAACCTGAACAAAATGGTTGTGGAGACCAATGAGCAGGCCATTCCCAAGTGTGCGGAGGCCATGCACAGTCATCTCTGTGATGCTCTTACAAGACtggAAGCTGCCAATCACATGATTCAAAGAATACAGCAGAGGGAGCTAGAAGCGCAGCAGAGCTCCAACCTGCAGGCTTGTGAGGACAGACGCAAAGCTGAATGGGAGGAGTTCATGAAGGAGCAGAGCCGCAGGAGAGAGGCCATCGATGAAGAGCAGGCCAAAGCCGTGGGGAGGCTCAGTGCTCAGTATAGCGAGATGGAAAAAGACTTGGCTAAATTCTCCACTTTTTGAGCACTTTGCGTGTGAGAAGGGGAGCCCCTGAGGAGAGGTGACAATGGCCTCCATCTGACTCAGGTCTGGTTAATAAATCAAACAGCAGTCAGTGCAGCTTGTACCTACAACCGGCAAGGCCAACAGAAAGCTTGTCATGTGTTTGCATCCACATCCACTTTGGAACTGCATAATGGAAGTATTATACCcatgcatatttttttcttgatatAAGGAAAGATTAagtattattgtatgtttaaaatcatATCTGAATTATTTGGGTGtgaaaataagttgttttccaaaattgtttaaaaacatgtcaagTTATTCCTCATATGACCTGTTGCtgatttacataattaaataatttggatAAAAATCTGTGCTGCATTAAATCTGTGCATAAAAACAGGAATTTAGCAGGGACATGCAACATTGTATGTAAACTGCTGAGTTGTGGACTAACGTGTCACAGTGAAAATGTTGGCGCTGAAGAATGCGATTCAGCACTAGGTGGCTATGATTGTGTTCCTGCACAATGAGAGTGCAAGACGTGCATTGgcaaatatacatttcacaccTCTGGTCTCTAAATGGTTTAAACAAACCCAATTGAAAAAGCATGTGTCCCCCGTGGGAAAGCCGCAGTCATGTTGATCACCGTAAATCAGCGCTGGCATGCAGCTCATAGCGCTCAGGAAAAATAGTGTTACAACGTAAAGGAATGAACAGCTGGGggtgttttgtataattttgtgtgggttaaagaaaatcaaacctGAAAGTGTTAAACTTTCTACTTAGCTTTGTATTCAGCAGTGTATCTGCCCTACACAATGGCAGCCTGTTTGAATGGATGGCTGGATATCAAGCCACATTCCTGGGATGTTGAAAACGTGATTAACCTTAGCAGaggagacaaaataaatatttgaaattactttcaaaaacattgaATGGTGGccagtatttttttccagttttttgtttttagcattCAGGATAGAGGTGAAAACCTCATCAAtcaatacaagaaaatacacaGCTTCCTGACATTATTGTGCACTTGTGCAGCTGATATCATTGAACATGTTTAATCTGAGAAATCTTTAGTATATGTAATGGTTGAACTGAAGAGTAGAAATGACATCCATCTCAACAGTTGACATTATTCTGCAGTTGACATCCTGCTTTAAGGAGatggtacttttttttttaattcattaaagaCTCCCTTTACTTATTGAGAcggtttgttttattatatttgatagGTTTTTAACATAATCCAGACTGTAGCTTGGATTGCTAGTTTAAATGTTCTAAAGATCAGACACCCTCTGGCTTTGCAAACAGATGTTTCGAGCAAAGTGGAAGAGCACACCTGGCACTGTGGCTGTCGAAAGCCAGACAGACATCAAGCTTTAATCATGAGTGACAATAAGAAACCGCAGCCTGTTTCCAAAAACAGGACCACTGGGCTTGGATTGAAACACTGCATTCTCGTTCTCTGTCTTATTTTGAAACTAGAAATAAACAGTATGTACAGTTGTACCTGACGGCATACACACCCttcatttaacacatttgtttatgtcgtttatttagtttttaaggaACATTGACT

Function

GO:

id name namespace
GO:0030133 transport vesicle cellular_component
GO:0031083 BLOC-1 complex cellular_component

KEGG:

id description
K20187 BLOC1S5; biogenesis of lysosome-related organelles complex 1 subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019525 True 3815 mRNA 0.40 5 25631697 25639027

Neighbor

gene id symbol gene type direction distance location
AMCG00019524 LOC105920200 coding downstream 18568 25604902 ~ 25613129 (-)
AMCG00019521 NA coding downstream 108704 25519027 ~ 25522993 (-)
AMCG00019509 hus1 coding downstream 473251 25152857 ~ 25158446 (-)
AMCG00019512 NA coding downstream 492380 25106292 ~ 25139317 (-)
AMCG00019511 pdia4,LOC107727231,LOC107741760,LOC107686698,LOC107695410 coding downstream 529124 25098354 ~ 25102573 (-)
AMCG00019527 NA coding upstream 1714190 27353217 ~ 27379929 (-)
AMCG00019536 drosha,rnasen,LOC107556767 coding upstream 3020990 28660017 ~ 28711602 (-)
AMCG00019541 NA coding upstream 3079053 28718080 ~ 28826591 (-)
AMCG00019540 NA coding upstream 3516310 29155337 ~ 29155822 (-)
AMCG00019539 NA coding upstream 3609537 29248564 ~ 29260695 (-)
G34763 LOC107656144 non-coding downstream 116473 25512084 ~ 25515224 (-)
G34596 NA non-coding downstream 1484846 24146194 ~ 24146851 (-)
G34541 NA non-coding downstream 1684240 23898273 ~ 23947457 (-)
G34514 NA non-coding downstream 1989456 23610429 ~ 23642241 (-)
G34502 NA non-coding downstream 2053412 23576527 ~ 23578285 (-)
G34831 NA non-coding upstream 176666 25815693 ~ 25816056 (-)
G34846 NA non-coding upstream 534035 26173062 ~ 26211553 (-)
G34853 NA non-coding upstream 653328 26292355 ~ 26336737 (-)
G34859 NA non-coding upstream 738090 26377117 ~ 26377354 (-)
G34868 NA non-coding upstream 1031878 26670905 ~ 26676220 (-)
AMCG00019500 pign other downstream 1537033 24052011 ~ 24094664 (-)
G34470 NA other downstream 2432089 23147861 ~ 23199608 (-)
AMCG00019487 NA other downstream 2887515 22670647 ~ 22744182 (-)
AMCG00019446 ube2w other downstream 4866201 20743530 ~ 20765496 (-)
AMCG00019419 cpa6,LOC106579545 other downstream 6176728 19442395 ~ 19454969 (-)
G35067 NA other upstream 3878969 29517996 ~ 29521984 (-)
AMCG00019556 NA other upstream 3896717 29535744 ~ 29550162 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other upstream 3999539 29638566 ~ 29645963 (-)
G35101 NA other upstream 4040202 29679229 ~ 29685302 (-)
AMCG00019597 NA other upstream 5783002 31422029 ~ 31427583 (-)

Expression


Co-expression Network