AMCG00019528 (cdh18,LOC102798556,LOC102310872)


Basic Information

Item Value
gene id AMCG00019528
gene name cdh18,LOC102798556,LOC102310872
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 26849325 ~ 26857024 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019528
CTTCACTCCAACTCGGATAAAGGGGATGGATCCGTCCGGTACATTCTCACTGGCGAAGGGGCTGGcactatatttattattgatgaGATCACTGGAGATATACATGCCACCAAAAGTCTCGATCGAGAAAAGAAGACGCATTATGTTTTGCATGCGCAAGCCATCGATCGGCGGACGGAGAAGCCCCTGGAGCCGGAATCCGAGTTTATCATCAAAGTTCAAGACATCAATGACAATGCCCCGAAATTTCCTGATGGTCCATTTGTGGCAGCTGTACCAGAAATGTCCGAAGTTGGTACCTCTGTTCTCCAGGTGACTGCGACTGATGCAGATGATCCCACCTATGGAAACAGTGCCAGAGTGGTGTACAGCATTCTCCAAGGACAGCCTTATTTCTCTGTTGATCCCAAAACT

Function

symbol description
cdh18 Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction.

NR:

description
PREDICTED: cadherin-18 isoform X2

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019528 True 414 mRNA 0.48 2 26849325 26857024

Neighbor

gene id symbol gene type direction distance location
AMCG00019526 NA coding upstream 655799 26170249 ~ 26193526 (+)
AMCG00019523 bmp6,LOC107664667,LOC107678510,LOC107730008,LOC107382712,LOC106530850 coding upstream 1247880 25587990 ~ 25601445 (+)
AMCG00019522 NA coding upstream 1289034 25559830 ~ 25560291 (+)
AMCG00019518 NA coding upstream 1290235 25539733 ~ 25559090 (+)
AMCG00019520 pdcd6,LOC106579627 coding upstream 1312409 25526231 ~ 25536916 (+)
AMCG00019531 LOC106578564,LOC106590046 coding downstream 40643 26897667 ~ 26900729 (+)
AMCG00019530 NA coding downstream 95673 26952697 ~ 26957589 (+)
AMCG00019529 NA coding downstream 422696 27279720 ~ 27282910 (+)
AMCG00019533 NA coding downstream 1177660 28034684 ~ 28034998 (+)
AMCG00019532 NA coding downstream 1177986 28035010 ~ 28035417 (+)
G34863 NA non-coding upstream 333409 26515645 ~ 26515916 (+)
G34834 NA non-coding upstream 504593 26251424 ~ 26344732 (+)
G34838 NA non-coding upstream 548973 26298521 ~ 26300352 (+)
G34742 anks6 non-coding upstream 1501597 25342261 ~ 25347728 (+)
G34704 NA non-coding upstream 1727947 25121170 ~ 25121378 (+)
G34893 NA non-coding downstream 261500 27118524 ~ 27156206 (+)
G34912 NA non-coding downstream 623297 27480321 ~ 27480677 (+)
G34916 NA non-coding downstream 870393 27727417 ~ 27727643 (+)
G34921 NA non-coding downstream 903264 27760288 ~ 27760653 (+)
G34926 NA non-coding downstream 1099743 27956767 ~ 27956966 (+)
AMCG00019496 NA other upstream 2629334 24215877 ~ 24219991 (+)
AMCG00019492 NA other upstream 2762844 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 3153524 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 3601226 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 3645075 23185816 ~ 23204250 (+)
AMCG00019535 NA other downstream 1756231 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 2443931 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 5453013 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 5467376 32324400 ~ 32392976 (+)
AMCG00019638 LOC107757182 other downstream 7597185 34454209 ~ 34578440 (+)

Expression


Co-expression Network