AMCG00019535


Basic Information

Item Value
gene id AMCG00019535
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 28613255 ~ 28710887 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019535
ATGAGAACTTACTTACTTTTAGTGCTTTGGGCTTGCCTGCTCCATCTAGGTGATGTGAGGGTCTTTTTTAAAAGGACTACAGGGGATGGAGTGTCACTGAGGCGTTCCAAACGAGGATGGAGGTGGAATCAGTTCTTTTTACTTGAAGAATATACAGGAAATGATTATCAATATGTCGGAAAGcTTCATTCTGACCAAGACAAAGAAGATGGGAGTCTAAGATACGTTCTTAATGGAGATGGGGCTGGTAGCTTGTTTCTAATTGATGAAAACTCTGGTGATATTCATGCTACTAAGAGGCTGGACAGAGAAGAAAAGGCCTACTACACACTGCGTGCTCAGGCTGTAAACAGGAGGACAGGCCGTCCAGTGGAGCCAGAGTCTGAATTCATCATTAAAATTCATGACATCAACGATAATGAGCCAAAGTTTACAAAGGAAATTTATACAGCCAGTGTCCCAGAAATGTCGGATGTTGGTACCTCTGTTGTACAAGTTACAGCGACTGATGCAGATGACCCAACCTACGGGAACAGTGCAAAAGTTGTCTACAGCATTTTACAGGGGCAACCCTACTTCTCAGTAGAGGCAGAAACAGGCATTATTAGGACAGCCCTTCCCAGCATGAACAGAGAGATTCGGGAGAATTATCAAGTTCTCATTCAGGCCAAGGACATGGCAGGCCAGATGGGTGGATTATCGGGGACCACCACAGTCAATATCACCCTCACGGATGTGAATGACAATCCCCCCCGATTCCCTCAGGGATCATATCATTTTAGTGTTCCAGAATCCACCGAGCCTGGGTCGCCATTTGGGAGGATTAAGGCTACAGATGCTGATATTGGCAAAAATGCTGAGGTTGCCTATAACATTATCGGTGGGGATGAACTGGACATGTTTGATATCATGACAGATAAGAACACCCAAGAAGGGGTCATTACTGTGAAAAGGCCTTTGGActatgagagaaagaaaatatacactcTCAAAGTGCAGGCGGAGAACACCCACCTAGACCCACGATTTCTTTCCCTGGGCCCCTTTAAAGACACAGCAACCATGAAAATAACTGTCGAAGATGTTGATGAACCTCCCATTTTTGAAAGGGCAAGTTATATTATGGAAGTTAAGGAAGATGCCAGTGAAGGCACCGTCATTGGATCTGTTATTGCCGCAGACCCGGATATCACCAACAGTGCTGTCAGatattccATTGATCGACGCACAGACTTGGATAGAATGTTTAACATCCATTCTGGAAATGGAACAATCTTTACTCAAAAACACCTTGACCGGGAAGAATCTGCATGGCATAACATCTCGGTGATTGCAACAGAATTAAaCAACACAGCTGGGATCCTGACAAGGCGAAGTGGGTTTAGTCGACTGGAAAGGAGCACCTACCTTTTGCCGGTGGTGATATCTGACGGGGAATACCCCATTCAGAGTATGACAAGCACCCTGACAATACGCGTGTGCACCTGCGACCGAGAGGGCAACATGCAGTCCTGCAACGCTGAGGCGCTGATGCTGCCTGCAGGCCTCAGTACTGGCGCTTTAGTGGCCATCCTGCTCTGCATCATTATTCTTCTCATCATAGTGGTGCTGTTTGCGGCCCTCAGGAGGCAGAAGAAAAAGGAGCCTCTGATCATCTCCAAAGAGGATGTCAGAGACAACGTTGTCAGCTACAATGACGAAGGAGGTGGAGAGGAAGACACCCAGGCCTTTGATATTGGCACACTGCGAAATCCTGAAGCCATTGAGGATAACAAGCAGCGCAGGGATATCATTCCCGATTCCCTATTCCCTTCTCGACGGACAGCACCTTCACGGGATAATGCCGATGTCAGAGACTTCATAAACCAAAGGCTGCAAGAAAACGACACGGATCCAACTGCACCCCCCTATGACTCTCTGGCGACCTATGCTTACGAAGGCAACGGGTCCATAGCCGAATCTCTTAGTTCACTGGAGTCTGCAACCACAGAGGGAGACCAAGACTACAATTACCTCAGTGAGTGGGGGCCCCGATTTAAGAAGCTGGCAGACATGTACGGGGCATTTATTGCCGCCCTGTACATAGACAAGGACTTGGAATACGTCCACACgtttatgaatgtatgtttcTTCCCTAGATTAAAGgAGTTTATTCTAAACCAGGACTGGAATGACCCCAAATCCCAACTGCAGCAGTGCTGTTTGACCCTCCGGACAGAAGGAAAAGAACCTGATATCCCATTGTACAAAAAGGACTTAGTGAGTGAAAGTGAGAACATGAAATGTCCATCTGAGGGCATTGAGAGAAAAGTTCTCGCTTGGCTGTCCAggcgcctctctctctcctcctcccagcGAGGCCGCTTCCGTTCCCGACTGTTTGAACGACTACAAAATACCTGCTACGTTCCCGACTCCTGTGTCGAGGAGGTGTCCTTCCTCGCTCGAAGTCCGACCTGTGGCGGCTCACTTCTTGCCTCCGCCTGTCTGGGCTTCGGCCCCGATCCCTGCGCTCTCCTA
>TU43708
CTTTACACTTACTATGAAACTAATAGAATTGAGAATGTTGTTTCTtctaaccattttttttttgtttgcacttggCACTATTCATTTGTCACAAACACAATgaacattgaaatgtattggtTTCTGTGATTTAAAGCTGACAGTAACTCAAATGTTTGtgaatgtggattttttttttttttactgttggtttatatattttttcaatccCAAATGCATTTATTGCTCTACTTTTTTTTCCAGCCTTTCTTATTCTTAAATCCAAAAAAGTAATCAAACAAAAGAACACTTAAGCAAAACTGAGAATCAAGCCAGGTGATGGGTAAACACCATCCTATTGGCTGAACACACAGACAATGAAAGTGTGTCTGACATAACAAGAAGTGTTATATGTTAACAAACAGACCTTTTCAATTAGAGGCACTGCtagtttttgttgtcttttttgatCTCTATATATGGTCTTGAGGAGTACTCACCATTGCACTAATCTAAATTTTGCTTTTTAGCATTTATTGCCGCCCTGTACATAGACAAGGACTTGGAATACGTCCACACgtttatgaatgtatgtttcTTCCCTAGATTAAAGgAGTTTATTCTAAACCAGGACTGGAATGACCCCAAATCCCAACTGCAGCAGTGCTGTTTGACCCTCCGGACAGAAGGAAAAGAACCTGATATCCCATTGTACAAGTAAGCTTTtggagaacatttttttttttttcttctgcctaCATCAGTCTACAAAATCAAAGTGTCATTTTGGTGGTGGAGTATTGAAAGTGTAGCACAGTTTTAA

Function

GO:

id name namespace
GO:0006662 glycerol ether metabolic process biological_process
GO:0018904 ether metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019535 True 2520 mRNA 0.48 14 28613255 28710887
TU43708 False 802 lncRNA 0.34 2 28651669 28654015

Neighbor

gene id symbol gene type direction distance location
AMCG00019532 NA coding upstream 577838 28035010 ~ 28035417 (+)
AMCG00019533 NA coding upstream 578257 28034684 ~ 28034998 (+)
AMCG00019529 NA coding upstream 1330345 27279720 ~ 27282910 (+)
AMCG00019530 NA coding upstream 1655666 26952697 ~ 26957589 (+)
AMCG00019531 LOC106578564,LOC106590046 coding upstream 1712526 26897667 ~ 26900729 (+)
AMCG00019534 LOC107714825 coding downstream 1917 28712804 ~ 28730320 (+)
AMCG00019537 NA coding downstream 115466 28826353 ~ 28889651 (+)
AMCG00019538 cdh20 coding downstream 371826 29082713 ~ 29100803 (+)
AMCG00019542 kbtbd2 coding downstream 557024 29267911 ~ 29272251 (+)
AMCG00019559 NA coding downstream 650571 29361458 ~ 29363773 (+)
G34941 NA non-coding upstream 83624 28529171 ~ 28529631 (+)
G34938 LOC103376870 non-coding upstream 283421 28329317 ~ 28329834 (+)
G34937 NA non-coding upstream 313598 28299422 ~ 28299657 (+)
G34934 NA non-coding upstream 393946 28212585 ~ 28219309 (+)
G34930 NA non-coding upstream 419266 28174672 ~ 28193989 (+)
G34994 NA non-coding downstream 94699 28805586 ~ 28805811 (+)
G35013 NA non-coding downstream 239082 28949969 ~ 28950211 (+)
G35031 rnf152,LOC103146929 non-coding downstream 441813 29152700 ~ 29156187 (+)
G35085 NA non-coding downstream 924821 29635708 ~ 29683436 (+)
G35166 NA non-coding downstream 1461523 30172410 ~ 30180360 (+)
AMCG00019496 NA other upstream 4393264 24215877 ~ 24219991 (+)
AMCG00019492 NA other upstream 4526774 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 4917454 23672125 ~ 23695801 (+)
AMCG00019480 NA other upstream 5365156 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 5409005 23185816 ~ 23204250 (+)
AMCG00019551 lsm5 other downstream 590068 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 3599150 32310037 ~ 32317571 (+)
AMCG00019609 NA other downstream 3613513 32324400 ~ 32392976 (+)
AMCG00019638 LOC107757182 other downstream 5743322 34454209 ~ 34578440 (+)
AMCG00019641 NA other downstream 6129429 34840316 ~ 34851323 (+)

Expression


Co-expression Network