AMCG00019563 (foxf2,LOC102792585)


Basic Information

Item Value
gene id AMCG00019563
gene name foxf2,LOC102792585
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 30167515 ~ 30172280 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019563
GAGGAAAGACAGATTTACGAATTGATAGGTGGTCGGGTTTTGTTTGGCTGGGCAGCTTTACGCAAAAAGTCGAGGAGCTCTGCGTTTCCTCTCCTTAAAGGATTAAGGCGAGTGATGGCCACCAGGTGGGGGGCAGAGCTGCAGTCCCAGCGACACAGAACCGCTATCTGGGAATAAACTAAAGCAATAGCACGCAGAAAATCACCTTACATTTCAACTTCGCCGAGAGAACAGACGTGGAAACTGAGCTGAAACAGAGGCCTCGTTTTTCgaactttttttcctcttttcgcTGCTGTGACCTGAAGGGGACATACTTTTTACCACCATTGCTCTCCGTGGAACACATGTCCTAGCGGTCAAGTAGAGTTCAGTAAGGCGTATCTTCTGAAGGGACCATCATTAAAgagtctctctcgctctctctctctttctgtctcgcATTCTCCATTGAATCGTGTTGCTTTGCACACCATTTGCACCAGCAAGCAGGACATGACGACTGAACCTCCCCAACAGCAACTGGACCCGCCGCCACCTCTAAGGTCGAGCCCGGCCTCCGGAGTTTTGCATTCCGCCCTGATGAGCACACAGTCCGCGGTGGACAATGCTGCCGCTTCCACCAAAGGCAAGAAGGCGAGCTCCGGGCTCAGGCGCCCTGAAAAGCCGCCTTATTCCTACATTGCTCTCATCGTGATGGCGATCCAGAGCTCTCCCACCAAAAGATTAACCCTGAGCGAGATATACCAGTTCCTCCAGGCCAGATTCCCATTCTTTAGAGGATCTTACCAGGGATGGAAAAACTCTGTTCGTCACAATTTGTCCTTGAACGAATGTTTCATCAAACTACCCAAGGGACTGGGAAGACCAGGGAAAGGGCACTACTGGACCATTGACCCGGCCAGTGAGTTTATGTTCGAGGAGGGGTCCTTCCGACGCCGACCAAGAGGATTTCGGAGAAAATGCCAGGCTTTGAAGCCCATGTATCGGATGATGAACGGCATCGGTTTTGGCACTTCAATATTACCACAAAGCTTTGATTTTCAAGCGCCGTCCGCGTCTTTAGCGTGCCACACCAACGGCTATAACTTAGATATGATGACTAATTCCATGGCAGGGAGCTATGATGGACTAAGCAGTGGCCACCATGTTCCTCACATGTCTCCCAGTCCTGGGTCCACTTACATGGCCAGCTGCCCAGTGACATCTAACGGAGACTACGGTCCAGATAGCAGCAGTAGTCCAGTGCCCTCTTCCCCTGCCATGGCGAGTGCCCTGGAGTGCCATTCTCCCTATGCAAGTACGTCTGCGCACTGGGCATCGTCGGGTGGATCTCCGTATATTAAACAACAATCCCTGGGCACTAACAATCCCACGTCTTCAAGTTTACATTCTAGCATGTCCTCCTACTCCCTAGAGCAAAGTTATCTCCATCAAAATGCCAGGGAAACAGCTGACATTTCAGtgggGATACCTCGATACCAAACCCACTCCTCACCTGTGTGTGACAGAAAAGATTTTGTCTTGAACTTTAACGGGATCTCATCCTTCCACCCCTCGGCCAGTGGCTCCTACtatcaccaccaccatcaccaccaccaccaccagagCGTCTGTCAGGACATCAAGCCGTGCGTCATGTGAAAACAGCCATGCTCACATTGTTCTCTGTCATGCAAGAAAGTCCCAAAATATGTAGTTGGGCCAGAAGGTATAGACAAGTTCATTTCAGCACCTTCACCCCGACCCTTTGACGGGAAACATTTATTATCCTCGGGATTCCAGGTTCAGCTGAAAGGACAGAGAATCTGCTCCAAACACCTGACCTCCCGGGTGCCTctataaaacataaatggatCATTCTTCCTAATAATACATGTTGTTTTGTCAGTCCAAGCTTATATCTTCTGAATTGATTACAGTCACTGTAGCTAAAGGCGTGGAAAGCCAATAAAAGGTTTCAATATTTGGAGAGTTGCTGTTTAACAGAGTCCTCTTTCTTCTACTTGAGGTAAACCCGCCATCAACTATACTTTCATTTTATACTGCAACCGGTGGGTCGAAGTCTTAATGCAAGTTTTCTTCATGGACTTTATGGAAGAATCGACAATTAAATGTCTCACAACACAGCttggtttttaatttcaatacagCACTAAGAAGTCGAAatggaaagcaaaaacaaaacaaaaaaaagttattttggcCTACAAACCATTTTGCGTTATATCATGTATGTTATTAATTCTGTTCATCTGCATTTGCTTCTTTTAAAGGagtgaaacattttcaatgtatattaagtttaattttaatgtctttcAGTAGACGATTTACTATATAAACTATATTCGaaggtataaaaataaatataaacgtAGGCCTacacaaagctttttttttttttaattaaataacattttg

Function

symbol description
foxf2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including genitalia development; regulation of cellular protein metabolic process; and roof of mouth development. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex.

NR:

description
forkhead box protein F2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019563 True 2424 mRNA 0.46 2 30167515 30172280

Neighbor

gene id symbol gene type direction distance location
AMCG00019564 foxc1,foxc1a,LOC103370816,LOC104941097,LOC106532673 coding downstream 29354 30136731 ~ 30138161 (-)
AMCG00019555 wrnip1,LOC103135799,LOC106941779 coding downstream 382273 29773685 ~ 29785242 (-)
AMCG00019557 NA coding downstream 400909 29761329 ~ 29766606 (-)
AMCG00019546 NA coding downstream 725738 29440921 ~ 29441777 (-)
AMCG00019544 NA coding downstream 762493 29404063 ~ 29405022 (-)
AMCG00019566 NA coding upstream 11235 30183515 ~ 30184507 (-)
AMCG00019571 irf4a,irf4,LOC108267998,LOC107565529 coding upstream 275913 30448193 ~ 30462200 (-)
AMCG00019572 NA coding upstream 301166 30473446 ~ 30477047 (-)
AMCG00019573 tbb2c,LOC107393497,LOC105029894,LOC105891054,LOC105023713,LOC106593669,LOC106575097 coding upstream 393756 30566036 ~ 30568189 (-)
AMCG00019575 NA coding upstream 404897 30577177 ~ 30591280 (-)
G35157 gmds,LOC107721371,LOC107556133 non-coding downstream 41185 30081650 ~ 30126330 (-)
G35145 NA non-coding downstream 319657 29847644 ~ 29847858 (-)
G35144 NA non-coding downstream 338865 29826657 ~ 29828650 (-)
G35129 NA non-coding downstream 395323 29771586 ~ 29772192 (-)
G35111 NA non-coding downstream 435748 29718345 ~ 29731767 (-)
G35190 NA non-coding upstream 239918 30412198 ~ 30442590 (-)
G35214 NA non-coding upstream 334790 30507070 ~ 30520464 (-)
G35243 NA non-coding upstream 420661 30592941 ~ 30674883 (-)
G35304 NA non-coding upstream 864844 31037124 ~ 31037337 (-)
G35397 mak,ick non-coding upstream 1235702 31407982 ~ 31410657 (-)
G35101 NA other downstream 482213 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 521552 29638566 ~ 29645963 (-)
AMCG00019556 NA other downstream 617353 29535744 ~ 29550162 (-)
G35067 NA other downstream 645531 29517996 ~ 29521984 (-)
AMCG00019500 pign other downstream 6072851 24052011 ~ 24094664 (-)
AMCG00019597 NA other upstream 1249749 31422029 ~ 31427583 (-)
G35476 LOC107575789 other upstream 2049784 32222064 ~ 32233398 (-)
AMCG00019645 NA other upstream 4338453 34510733 ~ 34522270 (-)
G35867 NA other upstream 4882739 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 5762516 35934796 ~ 35981536 (-)

Expression


Co-expression Network