AMCG00019566


Basic Information

Item Value
gene id AMCG00019566
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 30183515 ~ 30184507 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019566
ATGAAACTGGAAGTTTTCTCCGGGAGCAACTTTGAGGGAAAGCCGCTGGAGGTGTGCAGCGACGCCGAAGGAAGTGTCCCCTCTCCCCTGTCCGGGGAAGAGGAGCTGGGCTCGGATGGGGACTGTCGCATCAACAAGAAATCCCCCAAAGACCAAGATGTCTCGGAGCAGCCTGGCAGCGAGGAGGCGCCGGCAGGAGTCACCAGCTCCTCTGCCCTGAAGGAGGACGGTGGCAGCACCAAGTTTTCCAGCTCGTTCGCTATTGACAGCATCCTGAGCAAACCCTTCAAGAGAAAGGAGGGTGGGCAGCCTGAGAGAGACAATAGCCCTCAGTCTGGTGTCAGGGTGATGTGGCCCAGCAGCACCCCAGTGATGCCGTATGTCATGGGTTATCCACCTGCTGCTGTAGCCCACATGCAGCCTATGTTCCCAGTCAACCCCGGGGCTTCACAGTTGCTGCAGGCATACAGGTGCGGCTATTCAGACCCCGTCCTGGGCTTGGATCACAGAAGAGACTTTCTCACAGCTTTTCATTTGACTTCGGACGGCTTGCCTAACTCTATCCAAGCCCCTACTGCCGTGAGAGCAGCTGTAAACGGCTACCACGCATTCAAAATTGACTCTTTGCTTGCGTGA

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019566 True 636 mRNA 0.57 2 30183515 30184507

Neighbor

gene id symbol gene type direction distance location
AMCG00019563 foxf2,LOC102792585 coding downstream 11235 30167515 ~ 30172280 (-)
AMCG00019564 foxc1,foxc1a,LOC103370816,LOC104941097,LOC106532673 coding downstream 45354 30136731 ~ 30138161 (-)
AMCG00019555 wrnip1,LOC103135799,LOC106941779 coding downstream 398273 29773685 ~ 29785242 (-)
AMCG00019557 NA coding downstream 416909 29761329 ~ 29766606 (-)
AMCG00019546 NA coding downstream 741738 29440921 ~ 29441777 (-)
AMCG00019571 irf4a,irf4,LOC108267998,LOC107565529 coding upstream 263686 30448193 ~ 30462200 (-)
AMCG00019572 NA coding upstream 288939 30473446 ~ 30477047 (-)
AMCG00019573 tbb2c,LOC107393497,LOC105029894,LOC105891054,LOC105023713,LOC106593669,LOC106575097 coding upstream 381529 30566036 ~ 30568189 (-)
AMCG00019575 NA coding upstream 392670 30577177 ~ 30591280 (-)
AMCG00019576 NA coding upstream 444215 30628722 ~ 30629555 (-)
G35157 gmds,LOC107721371,LOC107556133 non-coding downstream 57185 30081650 ~ 30126330 (-)
G35145 NA non-coding downstream 335657 29847644 ~ 29847858 (-)
G35144 NA non-coding downstream 354865 29826657 ~ 29828650 (-)
G35129 NA non-coding downstream 411323 29771586 ~ 29772192 (-)
G35111 NA non-coding downstream 451748 29718345 ~ 29731767 (-)
G35190 NA non-coding upstream 227691 30412198 ~ 30442590 (-)
G35214 NA non-coding upstream 322563 30507070 ~ 30520464 (-)
G35243 NA non-coding upstream 408434 30592941 ~ 30674883 (-)
G35304 NA non-coding upstream 852617 31037124 ~ 31037337 (-)
G35397 mak,ick non-coding upstream 1223475 31407982 ~ 31410657 (-)
G35101 NA other downstream 498213 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 537552 29638566 ~ 29645963 (-)
AMCG00019556 NA other downstream 633353 29535744 ~ 29550162 (-)
G35067 NA other downstream 661531 29517996 ~ 29521984 (-)
AMCG00019500 pign other downstream 6088851 24052011 ~ 24094664 (-)
AMCG00019597 NA other upstream 1237522 31422029 ~ 31427583 (-)
G35476 LOC107575789 other upstream 2037557 32222064 ~ 32233398 (-)
AMCG00019645 NA other upstream 4326226 34510733 ~ 34522270 (-)
G35867 NA other upstream 4870512 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 5750289 35934796 ~ 35981536 (-)

Expression


Co-expression Network