AMCG00019597


Basic Information

Item Value
gene id AMCG00019597
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 31422029 ~ 31427583 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019597
ATCTCTGAATCTCTGCAGAACTAAGTAACACTCGTTGGACAACCGGAAAAATCCGGAGTTGCTGTAAACGGAGAGTGTTTTGGGCGGTGGGATAAACTTATCTGTGTTGCTGCATGTCTCAGCATTTTTTCTCGTCCGTTTTCGTGACTCCATTTATCTCCTCTCAACACACAAGTTAAACCCCTAACGTTATCCGTCGTCGACAGAGATACGGGCAGACTCCGCGTCCTGTTCAGTCGTTCACTTGTCCTGTCTCAGTGCTTTGCGGCAGTGCGAGCAGCGGACTTCGCCAAGGTCATCAAGATGTCCGTCGACTGGGTCGGATTTGGATATGCAGCTCTTGTTGCATCCGGAGGAATCATAGGTTATGTTAAAGCAGGGAGCGTGCCCTCCTTAGCTGCTGGCCTGGTCTTCGGGGGCCTGGCAGGGCTGGGGGCGTATCAGATATCACAGAACCCAAAGAACGTGTGGGTTTCTCTGGCGGCATCAGGAACCTTGGCTGGTGTCATGGGGATGCGATTTTTCAATTCTGGAAAGTTTATGCCTGCTGGCCTCATTGCAGGGGCGAGTTTACTGATGGTTGGGAGGATTGGTGTGAAGATGTTACAGAAACCGCATGACCCATAATAAAAGTCAGTTACAGAAATCTATTTCTGAAAGACTCTTCTATGCAAAACCAGgttattttcttccttgattatatatttactgCTGTtagttgattttcttttttgccaATAAAATAACTCATTGAAATCGATTACTGGAGTTAAATTGGGTAATCACAATGTgaacataattttgttttctttatattggAGAAAGGTTTTCTGGTGCTTTCCTGAAGGTTTCTTTCATATTGCACACTGATAACTGACCGTTTTGGTCGACTCTTCACTTCAGTGACGGAAAATTACCTGAAATGGCAAGAGAGAAGAGATTCTGGTTGGCATAGTTATAGACAAGTATTTGTTGTGGGCATTATCACATTGGTTTCTcatttcagaaactggattATATCTCTGTTTTACTATTGATATTAAGGTTGGTATTAAAGCTCTCCAGATGTGTGTGGTTTATAAGTCAGACAGTTAACTATGTGCAATTATAGGAGGACATTCATAACTTATTTGTTTACTACCAtgttgacaaattaaaaccGTTTCATACCTCCTCCACACCATATTTTAAGTGTTTGCATGGGACCTTGGCAAATGGTCCATGCGATTTGAAGATCTGGTTATGCTTTTCTTCACAGATGTTTCATTTTCTCACTGTCAAAGGGTgtaaaagatacaaaatatttgacTGGCCCAAACGCTGAATGATTTTTTTGGAGCGAGATGAATAAACCTAAGATTaagcatttctcttttttttttatcaaagatGGAAATACTGAAATTCAAGTGTAGGTTTGTCAATGTATGAGTAAGTATAACGTTTTATATTTCAGAGCATGAACCTAAAGAACAAGGCTAATGATGGTGACGTGATGCTTTTTATGCTGCTTTAGAGACAAAACTAGTGGAGTCCAGTAGAATCACAGCAGAACAAGATTGTTCCATTATTATCTGTACAATAACTCTTGTCTATCTACTCCAATACACTATATCCATATTGTGTTTGGAGGAAGATTGAGTTTTATTTTCCCAAGCAGTactacagtttattattatacaatactTAATACAAACTCTATACATGGACAGCATTttagtgaaaatatatattttgtaaataactCTCTAGAAACCATTTCTTGAACACTAAGTTTTACTACTCCAGAAagagatataaaaaatatgaatacacaaGAGTAAGACAAACTCTTTCTATGTTAAAGCATACAATATATGGCAATTTTATCTTAAAAAACACTAAGATACTTATAGGATTTTTCCATATACAGCTATATACTCTTacttaatacatttctttattttacagtatattttaaataaatctcacAGGATTGAGACTGAGCTCCACTGCTTATCTAACAAATATTGTTCAATTTctccatttcaaatgtattcctcTTTCTGTATCTAATCCCTATTGTAAAAATTACTGTTAAAAAGCGGATGtttggattttaaataaaatgcatttgcatgaaGTATATGATTCAGGTAAATGTAGGCATTTCCATGCAATTGAAAACAActaaatatgaaacaaataaataaaatagactgAAATCAATTATGAACAGTAGTAGAATACAATAACTTTT
>TU44258
GGAAAAATCCGGAGTTGCTGTAAACGGAGAGTGTTTTGGGCGGTGGGATAAACTTATCTGTGTTGCTGCATGTCTCAGCATTTTTTCTCGTCCGTTTTCGTGACTCCATTTATCTCCTCTCAACACACAAGTTAAACCCCTAACGTTATCCGTCGTCGACAGAGATACGGGCAGACTCCGCGTCCTGTTCAGTCGTTCACTTGTCCTGTCTCAGTGCTTTGCGGCAGTGCGAGCAGCGGACTTCGCCAAGGTCATCAAGATGTCCGTCGACTGGGTCGGATTTGGATATGCAGCTCTTGTTGCATCCGGAGGAATCATAGGTTATGTTAAAGCAGGGAGCGTGCCCTCCTTAGCTGCTGGCCTGGTCTTCGGGGGCCTGGCAGGGCTGGGGGCGTATCAGATATCACAGAACCCAAAGAACGTGTGGGTTTCTCTGGCGGCATCAGGAACCTTGGCTGGTGTCATGGGGATGCGATTTTTCAATTCTGGAAAGTTTATGCCTGCTGGCCTCATTGCAGGGGCGAGTTTACTGATGGTTGGGAGGATTGGTGTGAAGATGTTACAGAAACCGCATGACCCATAATAAAAGTCAGTTACAGAAATCTATTTCTGAAAGACTCTTCTATGCAAAACCAGgttattttcttccttgattatatatttactgCTGTtagttgattttcttttttgccaATAAAATAACTCATTGAAATCGATTACTGGAGTTAAATTGGGTAATCACAATGTgaacataattttgttttctttatattggAGAAAGGTTTTCTGGTGCTTTCCTGAAGGTTTCTTTCATATTGCACACTGATAACTGACCGTTTTGGTCGACTCTTCACTTCAGTGACGGAAAATTACCTGAAATGGCAAGAGAGAAGAGATTCTGGTTGGCATAGTTATAGACAAGTATTTGTTGTGGGCATTATCACATTGGTTTCTcatttcagaaactggattATATCTCTGTTTTACTATTGATATTAAGGTTGGTATTAAAGCTCTCCAGATGTGTGTGGTTTATAAGTCAGACAGTTAACTATGTGCAATTATAGGAGGACATTCATAACTTATTTGTTTACTACCAtgttgacaaattaaaaccGTTTCATACCTCCTCCACACCATATTTTAAGTGTTTGCATGGGACCTTGGCAAATGGTCCATGCGATTTGAAGATCTGGTTATGCTTTTCTTCACAGATGTTTCATTTTCTCACTGTCAAAGGGTgtaaaagatacaaaatatttgacTGGCCCAAACGCTGAATGATTTTTTTGGAGCGAGATGAATAAACCTAAGATTaagcatttctcttttttttttatcaaagatGGAAATACTGAAATTCAAGTGTAGGTTTGTCAATGTATGAGTAAGTATAACGTTTTATATTTCAGAGCATGAACCTAAAGAACAAGGCTAATGATGGTGACGTGATGCTTTTTATGCTGCTTTAGAGACAAAACTAGTGGAGTCCAGTAGAATCACAGCAGAACAAGATTGTTCCATTATTATCTGTACAATAACTCTTGTCTATCTACTCCAATACACTATATCCATATTGTGTTTGGAGGAAGATTGAGTTTTATTTTCCCAAGCAGTactacagtttattattatacaatactTAATACAAACTCTATACATGGACAGCATTttagtgaaaatatatattttgtaaataactCTCTAGAAACCATTTCTTGAACACTAAGTTTTACTACTCCAGAAagagatataaaaaatatgaatacacaaGAGTAAGACAAACTCTTTCTATGTTAAAGCATACAATATATGGCAATTTTATCTTAAAAAACACTAAGATACTTATAGGATTTTTCCATATACAGCTATATACTCTTacttaatacatttctttattttacagtatattttaaataaatctcacAGGATTGAGACTGAGCTCCACTGCTTATCTAACAAATATTGTTCAATTTctccatttcaaatgtattcctcTTTCTGTATCTAATCCCTATTGTAAAAATTACTGTTAAAAAGCGGATGtttggattttaaataaaatgcatttgcatgaaGTATATGATTCAGGTAAATGTAGGCATTTCCATGCAATTGAAAACAActaaatatgaaacaaataaataaaatagactgAAATCAATTATGAACAGTAGTAGAATACAATAACTTTTAAAAGaatagttaaatattaaaattttaCTTGAAAGTTTACATCAACATAATTCTGAAAAATGTTCCAGCTTTTTAAGCTTTGACTTGCAAATATTCTGTACTCTTGATCAAAAATGCAAGCCTAATTAAAAACAGCGGTCCTTTCTGAACAGAGAGAATTCCTAgtttacactttgttttcatataaacaATTACAGGCATTCAGTGTCATGCAGCATCCAAGTATTTTTAACAAGATAAAAACTGAATTGTAGAATTGTATTAAGtgattaaatgtaaacaatttcaaagactacattttaaatcaacaatTAAAAGACAATTATAATGTTCAACACTAAATAGTTTAGAACAGAACATACTCTGATGTGAAGTACAGTATAGATGGCATATGATGAAATCCAAATCAAATCTAGGAAAAAAATGTCATATTggtttataattattgttattcattaaAGAGAAATGGAAGTTTCTGGTTGATTTGGATGCACAGCCAAAGgcttagtttgttttttcttctgttgaacCAGTCTCTCCCTCACAGTGCTCAGTCTTAGGTTACAAACACCTAAGCATGGTCCTCATGGAAAACGTCCTGAACATCTTTGCTACCGATGGCTTCCATATTTGGATGCCCAGTCGATTCTCCCGTGCACTGGCTGAACTGGGGGAGCGCGGGCTAAAAGGCTGCCAGAGCTTTTCCCAGATGAGTTGAAGTTTGATCCTGGAATTTGGGATCTCGCAGCTTTGCTCCTCCATCCGTCgtaatctgaaaaagaaaggaaggcGCTTTGAAAACGTGGATCTGGTGTACATGTATGTCTACGAATAATGACAGAACGTGACGGATGGAAACATCACAGACCACTGCTGTTCTATGAGGAGTGAATTCTAAAAGCAAACCCAATATCCTACATATTTTAGTTCCTTATTTATTCTTCCTTTCTGAGATTGTGGGTGCtaagaataaatatattggcACTGTGCACCGTTAATCAATTTCTGACACTCCGCATCCCTTTGTAAATTATCTTGCAGTGTTCAATGTTCTCTACTGTCCAATAACGTatgcttgttttattatttttggcttAAACTCTTCCCCTGTTACCATCTAGGATGTGGAATAGATCATGGTTTGTATTAAActataaacatatacacatacactctgAAACCTGACCCAGAGAACTAATACTAAGTTTCTAGATTTAACCTATATAAAATGTCATGGTCGCTGTTTTCCACAATCCTGTTCCCACAAAAATGAGTAATAATTGAccttataatttaaataaataacctcaGAACtctcatatttatataatttgttgaTCAAGGATGGATTACtccctctttttttcccctcagtatACAGATGTCACGTTCTTTACATGTTgaacaaattaaagcaaaactacTGTACAGCACAGGTGTGTATCTGGTTACCAAAAGTGTTCATGT

Function

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04721 Synaptic vesicle cycle
ko05110 Vibrio cholerae infection
ko05323 Rheumatoid arthritis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019597 False 2239 mRNA 0.37 5 31423497 31427583
TU44258 True 3663 lncRNA 0.36 5 31422029 31427539

Neighbor

gene id symbol gene type direction distance location
AMCG00019592 NA coding downstream 81030 31316662 ~ 31340999 (-)
AMCG00019590 NA coding downstream 132278 31259809 ~ 31289751 (-)
AMCG00019585 NA coding downstream 343748 31072176 ~ 31078281 (-)
AMCG00019584 adcy1,LOC103399855,LOC105011947 coding downstream 442083 30947707 ~ 30979946 (-)
AMCG00019583 LOC103354709,LOC102798054 coding downstream 502855 30908864 ~ 30919174 (-)
AMCG00019598 NA coding upstream 1738 31429321 ~ 31432563 (-)
AMCG00019596 NA coding upstream 28545 31456128 ~ 31467641 (-)
AMCG00019599 NA coding upstream 93981 31521564 ~ 31529426 (-)
AMCG00019608 NA coding upstream 818249 32245832 ~ 32246580 (-)
AMCG00019606 NA coding upstream 869894 32297477 ~ 32307436 (-)
G35397 mak,ick non-coding downstream 11372 31407982 ~ 31410657 (-)
G35304 NA non-coding downstream 384692 31037124 ~ 31037337 (-)
G35243 NA non-coding downstream 747146 30592941 ~ 30674883 (-)
G35214 NA non-coding downstream 901565 30507070 ~ 30520464 (-)
G35190 NA non-coding downstream 979439 30412198 ~ 30442590 (-)
G35448 NA non-coding upstream 319042 31746625 ~ 31746866 (-)
G35458 NA non-coding upstream 644474 32072057 ~ 32072286 (-)
G35471 NA non-coding upstream 754441 32182024 ~ 32183570 (-)
G35481 NA non-coding upstream 857833 32285416 ~ 32285686 (-)
G35484 NA non-coding upstream 869270 32296853 ~ 32297284 (-)
G35101 NA other downstream 1736727 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 1776066 29638566 ~ 29645963 (-)
AMCG00019556 NA other downstream 1871867 29535744 ~ 29550162 (-)
G35067 NA other downstream 1900045 29517996 ~ 29521984 (-)
AMCG00019500 pign other downstream 7327365 24052011 ~ 24094664 (-)
G35476 LOC107575789 other upstream 794481 32222064 ~ 32233398 (-)
AMCG00019645 NA other upstream 3083150 34510733 ~ 34522270 (-)
G35867 NA other upstream 3627436 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 4507213 35934796 ~ 35981536 (-)
AMCG00019698 NA other upstream 6461861 37889444 ~ 38110224 (-)

Expression


Co-expression Network