AMCG00019605


Basic Information

Item Value
gene id AMCG00019605
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 32310037 ~ 32317571 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019605
GTGGACTGCGGGTACTGTTGTCATATGTGCTGTGTCTACTCTGATCTTTATTTGAACCCAGTCTTTATAATTAACTAGTTATATGAACAATGTATGCTCAAGCTACATGACttactaaacaaaacaacagtatataatacaattacttGTTGAATGTGTATGATTAATAGCTACTGGGTATCCGTCTATGAACAGGAAGGAGACTGAAATTCTGACAGTTGTCATGgccaaaaacaaaccaaaagggCAGAAGCAGAAGAGTGTGTTTCACGTTTCTAACAAGCAGGcgaaacacaaaactaaaacgAAGCCGGTCACAAGATGTCTGAAACGCatgaatgctgccaaaaaagaaaaagttgataacataaataaagtattCACAGAAGTTCAAAGGGAGGTTAAAACCTTATCAAAATGTACAGCACCGCAACCAAAACCACAGCCCCAGGTTACAAAAGCACAACCTATTGAAGTCCTAAATGTGGATGACACTGCCCAGCTCTTCTCTCAGTTATAACagatattacaataataaaaaaaagacttaacATGTAGCAAAATTCTGCTTTATTTGTAAAACTTTGGTCGagtaaaatgtgcaaaacaatttccatttttcaaAAAATGGGGCTATCATCAAAGT
>TU44372
GTACTGTCGCACTTCCATGACGTCATTGCGACAAAACCTCGTGTTTCCTTTCTGAAGTTGGGACCCAAACAGTTGTCATGgccaaaaacaaaccaaaagggCAGAAGCAGAAGAGTGTGTTTCACGTTTCTAACAAGCAGGcgaaacacaaaactaaaacgAAGCCGGTCACAAGATGTCTGAAACGCatgaatgctgccaaaaaagaaaaagttgataacataaataaagtattCACAGAAGTTCAAAGGGAGGTTAAAACCTTATCAAAATGTACAGCACCGCAACCAAAACCACAGCCCCAGGTTACAAAAGCACAACCTATTGAAGTCCTAAATGTGGATGACACTGCCCAGCTCTTCTCTCAGTTATAACagatattacaataataaaaaaaagacttaacATGTAGCAAAATTCTGCTTTATTTGTAAAACTTTGGTCGagtaaaatgtgcaaaacaatttccatttttcaaAAAATGGGGCTATCATCAAAGTCATAAAAAAAAGTGCTCATGAAGGCACTTATTTGTTCATTGTACATACAAACATCACTAAGGCAAAGACCTGTCAATGGCAGGTTCACAATTTACAGTATGAAGCAAGGGGGAAATGCTGGCAGTGATGCAatttaaaaagggacatatatatatatatatatctggaaATATAATCttaaccaaaaaaacaacttaaaattgTTCGCAGCAAAAGCATCTCCACGAACTTAACTCAATGTAGTCCTTCTGTCTGTAGTGTTTTACAATAACCATATACTTTAAACTGGCTCCAGCTTTACAACCGTAACTCAAAAAGGGCAGTAAGTTGAGGGATCTCACCCCCCACTGATGACCATAGTTATAAATACCTCTATATACACATTAGTTATTaaactaaacttaaaaaaataagtaatggttggAGGGCTGGGGAGAATGATTGCAGAGGTAGTCAAAATCAAGGCTTGCATTTCACCTAATAATTAAGGATTTGTACATCAAACAAGTCGCAGACTCCTTCATTGTCGTCCAGGTTGAAGTTGTAATCCACACCTGGAGCTGGCGACAACCGCAGCAGAGGGAAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019605 False 646 mRNA 0.36 4 32310114 32316984
TU44372 True 1087 lncRNA 0.38 4 32310037 32317571

Neighbor

gene id symbol gene type direction distance location
AMCG00019604 NA coding upstream 119051 32182079 ~ 32190986 (+)
AMCG00019603 slc35b3,LOC102782645 coding upstream 223274 32074208 ~ 32086763 (+)
AMCG00019602 NA coding upstream 548091 31758085 ~ 31761946 (+)
AMCG00019601 NA coding upstream 593480 31679378 ~ 31716557 (+)
AMCG00019600 tfap2a coding upstream 745744 31553554 ~ 31564293 (+)
AMCG00019613 NA coding downstream 591431 32909002 ~ 32929192 (+)
AMCG00019615 NA coding downstream 717200 33034771 ~ 33043805 (+)
AMCG00019616 wwp1 coding downstream 748551 33066122 ~ 33095201 (+)
AMCG00019614 cpne3,LOC104924704 coding downstream 800561 33118132 ~ 33141895 (+)
AMCG00019619 ripk2,LOC102795164,LOC107577259 coding downstream 1355980 33673551 ~ 33694225 (+)
G35485 NA non-coding upstream 3690 32297404 ~ 32306347 (+)
G35480 NA non-coding upstream 24349 32285444 ~ 32285688 (+)
G35447 NA non-coding upstream 563161 31746627 ~ 31746876 (+)
G35388 NA non-coding upstream 906778 31399781 ~ 31403259 (+)
G35229 NA non-coding upstream 1740970 30567876 ~ 30569067 (+)
G35490 NA non-coding downstream 1977 32319548 ~ 32320956 (+)
G35527 NA non-coding downstream 193110 32510681 ~ 32510949 (+)
G35553 NA non-coding downstream 657821 32975392 ~ 32975656 (+)
G35578 NA non-coding downstream 791429 33109000 ~ 33113379 (+)
G35595 LOC103376870 non-coding downstream 1067175 33384746 ~ 33385185 (+)
AMCG00019551 lsm5 other upstream 3005031 29300955 ~ 29305006 (+)
AMCG00019535 NA other upstream 3599150 28613255 ~ 28710887 (+)
AMCG00019496 NA other upstream 8090046 24215877 ~ 24219991 (+)
AMCG00019492 NA other upstream 8223556 24045689 ~ 24086481 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other upstream 8614236 23672125 ~ 23695801 (+)
AMCG00019609 NA other downstream 6829 32324400 ~ 32392976 (+)
AMCG00019638 LOC107757182 other downstream 2136638 34454209 ~ 34578440 (+)
AMCG00019641 NA other downstream 2522745 34840316 ~ 34851323 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other downstream 3728906 36046477 ~ 36063850 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other downstream 3974775 36292346 ~ 36299547 (+)

Expression


Co-expression Network