AMCG00019619 (ripk2,LOC102795164,LOC107577259)


Basic Information

Item Value
gene id AMCG00019619
gene name ripk2,LOC102795164,LOC107577259
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 33673551 ~ 33694225 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019619
CCCCCCCCCCGTTATAACCATTAACATGTAAACGTGTTGTTATTGGAATCGGGATATTTGTATAACGATTTAGATCATAATTCCGCTGTAGTTTtcatttcccccttttttttggGCGCCTCCCTCTCCGCTTTCGGAGGCCTTTGCATTTGATGAATATGGAGCATGCTGGGTGTGTGAATATTTGCAGCCTAACCAGTACCTTGCCCGTCATCCCCTATCAGAAACTGACCGACCTGCACTACCTGAGCCGCGGCGGGTTCGGCACCGTTTTCAGAGCCCAGCACTCAGACTGGAGAACTACGGTGGCCATCAAGTGCCTGAAGCTGGACTCTCCGGTGGGGGAAAGGGAAAGGAACTGTCTATTAAAGGAAGCTGAGGTTCTCCACAAAGCCAGGTTTAACTACATCATCCAGATTTTTGGTGTTTGTAACGAACCTGAATTCTTTTGCATTGTGACGGAGTACATGAGCAATGGATCACTTGATCAGCTTCTACACGAGAAGGATTTGTATCCATTGCTTGCCTGGCCCTTGAGACTTCGGATCCTCTATGAGATTGCCCTGGGAGTGAATTTTCTTCATAACATGACTCCACCTTTACTCCACCATGACCTGAAAACCCAGAATATTTTGCTGGATGCAGAATTCCATGTAAAGCTGTCCATCAGTAAAGCATCTGGCTCCAAGCCCCCTGAGATGGGTGGCACAGTGATCTATATGCCTCCCGAGGAGTACGAACCCTCCAAGAACCGACGGGGTGATGTTAAGCATGATGTGTACAGTTATTCAATAATTATGTGGGAGGTTCTGTCAAGAAAGATACCATTTGAAGAGGCCACAAACCCCATGCAGATCATGTTCAGTGTTTTACGAGGAACCCGACCAGACATTACTCCTGAGAGTCTGCCATTTGAAATCCCCAGCAGAGACACCCTCATCGACCTGATGACTTGTGGCTGGGCCAGTAACCCAGACAACCGCCCTTCATTTCTGAaatGCTTGATTGAACTGGAGCCTATGGTACGAAGGTTTGATGAAATTGAAGTTCTAGAGGCAGTTCTGGAAGTGAAGAAAGCTAAATTATTTAACAGGTCAAGCTATGCCTCGGCTTCAACACATGACAAGCAGTTGAAAGAAGAACCCAAAATTCTGAACATAATGAAAGAGAACATTCCATGGCAGTACAACAGCTCTGCCTCTGGCTCCAGCGTCTCACAAGAACCTGATATGTCCCAGCCACAGTTCCTCACGATAAGCAGCATGCCTCCTTccaaagGCCCTTCAGATCTCAATCTGGTGTCCAACGCATCCAGCCCACTGCAAGATCCTCCCAAGTCGCTCATTTCCCCAAGTATAGAGAACAACATGGACTTCAACCAGACCGCCAGACCGTACACAGACCTGAACATCGCCTTCAAACCAGGCATCCCGGAGACGGAGTGCGAGGAGCACCTCAGCTACATGACCCTGGAGCCCTGCACTGCAGGTTTCACCCCTCAGTACGCTCAGTCTGCACCTCAAGGCCCGGCAGCCCAGTGGATCCAGGCGAAGAGGGAGGACATCGTGACACAGATGACGGAGGCCTGTCTGAACCAGTCCCTGGATGCTCTTCTCTCCAGGGAGCTCCTCATGCGGGAAGACTACGAGCTGATCTCCACCAAGCCCACGAGGACGGCCAAAGTCAGGCAGCTACTGGACACCTGTGACAAGCAAGCCGAGGACTTCTGCAGAGTCGTCATTCAGAAGCTGATGGACAACAAGCAGATGAGCCTGCAGCCTTATCCAGACCTTTCTTCCCCCAGCCCAGCTCCCAGTGCCCCCTCACTGAAGTCCATGCACAATAAccgcaaaaactaaaaacaagaaaaaggaatacaaaaataaactttttgtgtgtgtgtgtgtgtcttcatCTTGAGTAAGATGTCATTTTGAGAAGATTCATAACAAGGAAGACAAAATCCATCTGAATACATCCAAGGGAAGGATATTAAAGGGAACTCCTGGAAGTGGGATCTTGCTCATGGTGCCAAAAGTTTTCAGCTCCGGTTGAATTTGTGTGAGTTCCGCAATCCCATTTTTCCATCAGTTTATTGAGTAGTCAGGCCCTGGTCAAAGTGAAATTACACTGAAATCAGAACGCTTGTTGGAAAAccttcaaattcaaaacaaacgaacaaacaaatTGCATCTCTCTTGGGAAATGACATACTACAGCAAGCTTGGCTCAACCCAGCGAGGATACATTTATTCACTCACGGTGGCAGTGGTCTTGATGTGAATGAAACTAACAAGtaccattgttttgtttctctgacttactgtattaaatatatagtatCTGGTGTCACACAGCTTACTTCATCTATTTTCTTCAGCTGATAAGTCATCTTTTCTATTATAATTTTTACTTTTGGTATACTACCTGCAATAACGATGCACTTTCTGTAGAAAATCAGTTCAGAAAAAAACGTTTTTGGTTTTTAAGTGCTTAGAGTAAAAACTGCGAATTGTATGAATTGCCCTAACAAAATTTGAGGGATCGTGGtggatgtattaaaaaaaacaagaccatTGTAACTTCAAAAGTGTCAGTTTGTTCagtgatacatttaataattttgacAATGGAATTTAAGTATTACAGAAAGCAAGTTGCaaacttgaaaaataatatcCCCAAGCATggtataaacaaatatgtacaaaattACCTTATAAGTAAATGCATATACTAGAGTACTGCATTCGTTATTGACAACTCTTTAAACACCCTCAACTGACTCTTCCATGCTGTCTTTTTACCTTCAAACCCTATTCTTAATGTAGAATTAGAAATAACACAAACTGCATTGCAACACTAGTTTTCTTTATATTACCAACCATGCTATTTTGGTCAAAACAATGAGCCAGAGTATACTGTTGTCTTcaaaaaattatttttttgtcactatatatatatatataatttaccattacatgatttgtttaattcacatataatattattaaaaataataataactttgtaTATTCTGGAGAATAACTAATGTCTGTTGATGTGTGGGCCCTTTCTAAAATGCTTAATTTGATCAATGCTAGTGTTAATTACCACCTACTGCAAATCCATTTTTTGTTCTGTCCCTTGGACAGCTCTTGGCTGTTTCtattaataaatgtactgtAGAGAATTAAAGTGATTAGAAATGCCACACAACTTTAAATAGATTAAGATTTAATCAGAGTTCcttgatgaaaatgtattaattcagtcATCCAAGATACTCCGAAGACAAAACTCTTGTTATACCAAGTGACCAggatgatgttttgttttgatactgACAGTATTttccgttttgtttttaaagaaaaatgtacctacattgttttttaccaaatgcagtgaaaatagGAATCATATAAAGATCTTTACACTTTACAGTGTTTAATAATGACATCCATGATCAAAGAATAACACCTAGTTATTTATATTCTTCCtaaattaagtgttttcttttagttACTGCTTAGGACATAATGGAGCCAGTCACGAAGGACAAGGAcaattttctgtttctgctctGTCAGAGGGTGTGTTAGGGTagtcaaatgaatgtatataatacaaaaaggTCAGTCTCCACTGCTGTTTGCCGCATTTCAAAGTTGTTAGTCTTACAATAATCTAGATCAAGCAGAACTATGGTATTAATCTTCCATTTGcatcaacaaattaatatataggctatatttggTTAACTTTTCTATTGCATGAGGtataattgatgttttttttgtactaaACGATCAGTAGATTCACAGGGAATGATGAGTCAGTTCATTTACCTTGTGTGGTGTTATGTGATGGTGAACACTAGATAGAAGTAAAGGTAGAAGTCAAGTCATGACCATTtgacattatattttttcagattttaggTCTTTCGGTCATATATGGCCTGAGATGAAGGCTAGAATTGTATACATTCACCATTATTTTGTAGTAATTAAATGATGGTTGTTCGTtagtttattcatgtattttcttACAAGACATTAAAAATTCAAACAATCTTGTAAATTGGTTccaaagatttgttttatttattttaatattcattggAGCTAGTATAATAATATGGGCCTAGTTATCCGGAAACCACAAATCACCATTACTGGCACAAATCCAGTTTGCTTTGTGGTGtctaaatgtggaaaatataGTAAACATCATAGCTCCTACAATTATTGTAAACTTACTTGCTGGTGCTACTGTAACTCATTTGTTTAAAAGAGCTGCtcatttaacaaatatattaacaGTATGCCAGAATATGTGCTTTCTCTGAGGGCAGCTGTGCTTCATGGGAACTAAAGAATGTACTTTTTGCAAACCTTTTAGGAAACTTTTCAAAATggccttcatttatttatttggttttgtattagttttttaattatttaattttgctttaaagTCATGTGCATagtaaacattcaaataatgaacatcgacaataaaaacatcagtATAGCTGGGGAGTATTTTGGGCCTTTGTTAATACAATCCTATTTATAGAagctgacattaaaaaaataagatagtCTGTATTGTACTTTGTGTGTTGATGCTAATACAATAGAACTCAAGTGGGGAAGTGGGGATGTTGTACTGGGTTTTCTTTGTACATGTGCTAGGCCAATACTGCTTTCTTGCTATTACCAAACTGTGATAAGGTTACCTACTTATGACTGCCTAACTGATTAAATGCTCATATTGCCAAGGAGAAACTGGTAGATTTAGCCAAGTAACACTACCAGtctatggttttaattttagtttatcCAAACCATTTCTCATATGTACCATGTTGTATGATTCCCATCTTCATGTATTTAGGACAGTGTTCATGGGATGGAGAGAATAGTCATTAGGTGGATCTCAGGTTCTGCCTTTGAACCACAATCAAATGCAATCcaacgtttttatttttcacataaagTACATGTATTTTGCCCACAGCCCTGTGGTTGAAAGGATGTAAACGTAGTGTGAATATGACCTCCTGTAGATACAGGAGGCactgtaaatacatgtaatgaAAAGGATCACCTATGTTGCAGTGTTATTAAAGTGGTCAGAATAGGGTCTGTAAGTTTGTTCTCGTCTCTTTCATCTCTTTCAGCTGCATGTGTGAAAACCTGGTCTTGGGAGGTCTTGGTCTCCTTTCTCTCTATTCCTTATATAACTTTCTGTGAAAATACACTATCCACACTGCTGTACAAGATATGTAGTGAGGGTTATAATGTTCGacatacaataaatatgaatcATGTCTCTCTTTTACATCGATGTTGTATGAGCACcctgcaatgaaaataaaggagTACATTCATATCTATAATACA

Function

symbol description
ripk2 Predicted to enable CARD domain binding activity and JUN kinase kinase kinase activity. Acts upstream of or within antibacterial innate immune response; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Is expressed in brain; gill; liver; pleuroperitoneal region; and unfertilized egg. Orthologous to human RIPK2 (receptor interacting serine/threonine kinase 2).

NR:

description
PREDICTED: receptor-interacting serine/threonine-protein kinase 2-like

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08846 RIPK2; receptor-interacting serine/threonine-protein kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019619 True 5414 mRNA 0.39 11 33673551 33694225

Neighbor

gene id symbol gene type direction distance location
AMCG00019614 cpne3,LOC104924704 coding upstream 531656 33118132 ~ 33141895 (+)
AMCG00019616 wwp1 coding upstream 578350 33066122 ~ 33095201 (+)
AMCG00019615 NA coding upstream 629746 33034771 ~ 33043805 (+)
AMCG00019613 NA coding upstream 744359 32909002 ~ 32929192 (+)
AMCG00019604 NA coding upstream 1482565 32182079 ~ 32190986 (+)
AMCG00019621 NA coding downstream 77 33694302 ~ 33705462 (+)
AMCG00019620 NA coding downstream 50311 33744536 ~ 33746650 (+)
AMCG00019626 pter coding downstream 105322 33799547 ~ 33845086 (+)
AMCG00019627 vim coding downstream 360378 34054603 ~ 34063226 (+)
AMCG00019632 NA coding downstream 399502 34093727 ~ 34100512 (+)
G35636 NA non-coding upstream 84964 33588383 ~ 33588587 (+)
G35595 LOC103376870 non-coding upstream 288366 33384746 ~ 33385185 (+)
G35578 NA non-coding upstream 560172 33109000 ~ 33113379 (+)
G35553 NA non-coding upstream 697895 32975392 ~ 32975656 (+)
G35527 NA non-coding upstream 1162602 32510681 ~ 32510949 (+)
G35689 NA non-coding downstream 70496 33764721 ~ 33764947 (+)
G35691 NA non-coding downstream 93293 33787518 ~ 33787785 (+)
G35709 NA non-coding downstream 230620 33924845 ~ 33925369 (+)
G35799 NA non-coding downstream 902502 34596727 ~ 34596933 (+)
G35812 NA non-coding downstream 968844 34663069 ~ 34714039 (+)
AMCG00019609 NA other upstream 1280575 32324400 ~ 32392976 (+)
AMCG00019605 NA other upstream 1355980 32310037 ~ 32317571 (+)
AMCG00019551 lsm5 other upstream 4368545 29300955 ~ 29305006 (+)
AMCG00019535 NA other upstream 4962664 28613255 ~ 28710887 (+)
AMCG00019496 NA other upstream 9453560 24215877 ~ 24219991 (+)
AMCG00019638 LOC107757182 other downstream 759984 34454209 ~ 34578440 (+)
AMCG00019641 NA other downstream 1146091 34840316 ~ 34851323 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other downstream 2352252 36046477 ~ 36063850 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other downstream 2598121 36292346 ~ 36299547 (+)
AMCG00019676 NA other downstream 3484134 37178359 ~ 37213519 (+)

Expression


Co-expression Network