AMCG00019645


Basic Information

Item Value
gene id AMCG00019645
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34510733 ~ 34522270 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019645
GAATCGTGTAAGTGCTCCAAACCCATCTGTGGCCACAATGGGGAGACCTACAGCACTGTGTGTGCAGCCTATTCGGACCGAGTGGCTGTGGACTACTATGGACGATGCCACGCTGTGGGCATAGTGTCTGAATACAGTTCGGAGTCGGGGTGTGCTTCCATCAGCTGTCCAACTCTCTCAACGAAGGGGTGCAACCCAGTGACTCCACCTGGGGCCTGCTGTCCTCTGTGTGCCGGCATGCTACAGATTCTGTGGACAAAAGACCAAATGAACGTCTTTGCTGAG
>TU44748
GCTCTTGGCAGGAGTTTCAAAGAACCGCCATTGTGTCAGCAGTAATGTAAGCTATTTCATAAACAAAATCATACAATGTAACTGATTGCTATTTTCCTATTGAATTCGCTGGACAGACAAGTGGAAAATCCAGCCCTATTTGCCATGAGGAGAAAGCTTTGGCAAAGGCCCTTTAGAAGAGCTCTTTGCAAAACTGCGGTGTTAAGATTAAAGGGCCGTAGTCTTTCATCTTCAATGTACCTCGCTGCAAGTACTCCGTCTAAACTCTTCCACTGTTCAGGAATAGACTAAACATGTCAAGGCTTTCTGACGTTGCTGCGTTTGCTTTGCTACAATGGCAGATCAATGGAGCAGACAGGTGAAAACAAAGGGGTCACTTGGAGATCTTACTGAAATCCtactgaatacatttcacaatcatATTCAATCAGTTATTCCTAAGAAACTGTTACTCTGGGCAGATGGCATATCCATAGTTACCCTTCACAATGAAATGTATTCGGTGCataaaattcaatatttttcttcagtatgTAGTACAATCACCACTGACAGAAAAGATAGAAGCCAATATAGaaggtttgatttggtccagcccTTTGACTAGTGGGTTACCACTTTTTCAGGTTTGCTATGGCCACATAGCCagacaaaatagtgtttttaaaccaaataaagaatgtaagaaagaaaaagagagtaTCCTGCTGACATTCATATTTAGATGTCCCCAAGTGCCTGACATTAACCACAGTGAATCATTGTAGTTTGATGGAGaagtttacaataaaaatatactttcttggctacatttctttaaaataaactttatacattttcatacaggagtttattctgtttgcctaatcataattaataatgaacaaacttGAGATTATGGTTTACATGTACCTATTTTCCCTGTTTCAGATGTATACCAAAACGAAAAGTGTGCCTTACAAGCATCAGCAAATATCCCTGCAACCAATATGAATGTGTGAGCAGGCCTTCAAGCTGTGACAGGTCCCTGCTGGACCCTGTGTGTGACACGGAAAATAACGAGCATCGTAATCTCTGCATGCTATACCAAAGACAGAAAGTACTTGCATACACAGGCCACTGTCAGGAATCGTGTAAGTGCTCCAAACCCATCTGTGGCCACAATGGGGAGACCTACAGCACTGTGTGTGCAGCCTATTCGGACCGAGTGGCTGTGGACTACTATGGACGATGCCACGCTGTGGGCATAGTGTCTGAATACAGTTCGGAGTCGGGGTGTGCTTCCATCAGCTGTCCAACTCTCTCAACGAAGGGGTGCAACCCAGTGACTCCACCTGGGGCCTGCTGTCCTCTGTGTGCCGGCATGCTACAGATTCTGTGGACAAAAGACCAAATGAACGTCTTTGCTGAGATCAATCACAATCAGCCCA
>TU44749
NCAAAGACAGAAAGTACTTGCATACACAGGCCACTGTCAGGAATCGTGTAAGTGCTCCAAACCCATCTGTGGCCACAATGGGGAGACCTACAGCACTGTGTGTGCAGCCTATTCGGACCGAGTGGCTGTGGACTACTATGGACGATGCCACGCTGTGGGCATAGTGTCTGAATACAGTTCGGAGTCGGGGTGTGCTTCCATCAGCTGTCCAACTCTCTCAACGAAGGGGTGCAACCCAGTGACTCCACCTGGGGCCTGCTGTCCTCTGTGTGCCGGCATGCTACAGATTCTGTGGACAAAAGACCAAATGAACGTCTTTGCTGAGATCAATCACAATCAGCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019645 False 285 mRNA 0.55 2 34512551 34514244
TU44748 True 1430 TUCP 0.42 4 34510733 34522270
TU44749 False 344 lncRNA 0.53 4 34510733 34520131

Neighbor

gene id symbol gene type direction distance location
AMCG00019634 NA coding downstream 386115 34120362 ~ 34124618 (-)
AMCG00019633 NA coding downstream 395613 34090291 ~ 34115120 (-)
AMCG00019630 NA coding downstream 458245 34036361 ~ 34052488 (-)
AMCG00019631 NA coding downstream 475807 33931143 ~ 34034926 (-)
AMCG00019629 rsu1,LOC107657774 coding downstream 585780 33901289 ~ 33924953 (-)
AMCG00019642 NA coding upstream 40769 34563039 ~ 34565981 (-)
AMCG00019646 NA coding upstream 197401 34719671 ~ 34727267 (-)
AMCG00019644 NA coding upstream 300446 34822716 ~ 34832157 (-)
AMCG00019643 NA coding upstream 328718 34850988 ~ 34855000 (-)
AMCG00019648 LOC108431216,LOC105019475,LOC108271758 coding upstream 370196 34892466 ~ 34937832 (-)
G35735 NA non-coding downstream 447599 33996555 ~ 34063134 (-)
G35690 NA non-coding downstream 730278 33780221 ~ 33780455 (-)
G35656 NA non-coding downstream 840228 33670211 ~ 33670505 (-)
G35652 NA non-coding downstream 847571 33662751 ~ 33663162 (-)
G35637 NA non-coding downstream 922193 33588314 ~ 33588540 (-)
G35803 NA non-coding upstream 122865 34645135 ~ 34650231 (-)
G35810 NA non-coding upstream 128432 34650702 ~ 34650987 (-)
G36016 NA non-coding upstream 1532209 36054479 ~ 36061297 (-)
G36038 NA non-coding upstream 1645696 36167966 ~ 36168171 (-)
G36074 NA non-coding upstream 1877142 36399412 ~ 36399659 (-)
G35476 LOC107575789 other downstream 2277335 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 3083150 31422029 ~ 31427583 (-)
G35101 NA other downstream 4825431 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 4864770 29638566 ~ 29645963 (-)
AMCG00019556 NA other downstream 4960571 29535744 ~ 29550162 (-)
G35867 NA other upstream 532749 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 1412526 35934796 ~ 35981536 (-)
AMCG00019698 NA other upstream 3367174 37889444 ~ 38110224 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 4894617 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 5447905 39970175 ~ 40123987 (-)

Expression


Co-expression Network