AMCG00019647 (hecw1,hecw1b,LOC107599276,LOC107656133,LOC107662981)


Basic Information

Item Value
gene id AMCG00019647
gene name hecw1,hecw1b,LOC107599276,LOC107656133,LOC107662981
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34972810 ~ 34982687 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019647
AACTTGTACCAGAACAGGTTTCTAGGCCTGGCAGCGATGGCCTCCCCATCCCGGAGCTCCCAGAACAGGCGACGATGTAAAGAACCAATGCGCTACAGCTACAACCCGGAGCAGTTCCACAATGTCGACATTCGCAATGGTACTCATGAAGCCATCACCATCCCGAGGTCCAACAGCGACACAGACCTGGTTACCTCTGACAGCCGCTCAACGCTCATGGTCAGCAACTCGTTTTATGCCATCGGGCAGTCTCAGGACTTGGTCATATGCTGGGATATCAAGGAGGAAGTGGATGCTGGGGACTGGATTGGAATGTACCTTATAGatgagGTGCTTTCCGAGAATTTTCTGGACTATAAGAACCGAGGAGTCAACGGATCTCATAAGGGCCAGATTGTGTGGAAAATCGAAGCAAGCTCCTACTTTGTGGAACcTGAAACGAAAATCTGCTTTAAGTATTATCATGGAGTAAGCGGAGCTCTACGCGCCACAACCCCCAGCGTCACAGTGAAGAATCCTTCTGCCCCG

Function

symbol description
hecw1b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of sodium ion transmembrane transporter activity; and regulation of dendrite morphogenesis. Predicted to be active in cytoplasm. Orthologous to human HECW1 (HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1).
hecw1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of sodium ion transmembrane transporter activity; and regulation of dendrite morphogenesis. Located in cytosol.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HECW1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019647 True 528 mRNA 0.51 3 34972810 34982687

Neighbor

gene id symbol gene type direction distance location
AMCG00019648 LOC108431216,LOC105019475,LOC108271758 coding downstream 34978 34892466 ~ 34937832 (-)
AMCG00019643 NA coding downstream 117810 34850988 ~ 34855000 (-)
AMCG00019644 NA coding downstream 140653 34822716 ~ 34832157 (-)
AMCG00019646 NA coding downstream 245543 34719671 ~ 34727267 (-)
AMCG00019642 NA coding downstream 406829 34563039 ~ 34565981 (-)
AMCG00019649 NA coding upstream 84176 35066863 ~ 35081017 (-)
AMCG00019650 NA coding upstream 99626 35082313 ~ 35082740 (-)
AMCG00019652 LOC103138028 coding upstream 165771 35148458 ~ 35162709 (-)
AMCG00019655 NA coding upstream 428805 35411492 ~ 35418455 (-)
AMCG00019656 NA coding upstream 495063 35477750 ~ 35542868 (-)
G35810 NA non-coding downstream 321823 34650702 ~ 34650987 (-)
G35803 NA non-coding downstream 322579 34645135 ~ 34650231 (-)
G35792 NA non-coding downstream 394338 34506033 ~ 34578472 (-)
G35735 NA non-coding downstream 909676 33996555 ~ 34063134 (-)
G35690 NA non-coding downstream 1192355 33780221 ~ 33780455 (-)
G36016 NA non-coding upstream 1071792 36054479 ~ 36061297 (-)
G36038 NA non-coding upstream 1185279 36167966 ~ 36168171 (-)
G36074 NA non-coding upstream 1416725 36399412 ~ 36399659 (-)
G36080 NA non-coding upstream 1555000 36537687 ~ 36537903 (-)
G36082 NA non-coding upstream 1584242 36566929 ~ 36567264 (-)
AMCG00019645 NA other downstream 450540 34510733 ~ 34522270 (-)
G35476 LOC107575789 other downstream 2739412 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 3545227 31422029 ~ 31427583 (-)
G35101 NA other downstream 5287508 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 5326847 29638566 ~ 29645963 (-)
G35867 NA other upstream 72332 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 952109 35934796 ~ 35981536 (-)
AMCG00019698 NA other upstream 2906757 37889444 ~ 38110224 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 4434200 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 4987488 39970175 ~ 40123987 (-)

Expression


Co-expression Network