XLOC_000620 (pdcd11)


Basic Information

Item Value
gene id XLOC_000620
gene name pdcd11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 49435017 ~ 49481173 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001053
AAATCCCGCCTCTCGGTGTTTACATCCGGGTCGAGAAGATGGCACGCTTGTGAGGAACATGTGAGATTTACTTGCACGAGAGGTACATGTTTCTACACCAAGTTTTACTAACGCAAATTGTGAAAAATGGCATCGATGGAAGAAGATTTTCCCCGCGGAGGTACTGAGAGGAAAAAACCCACCGACCTAATCCCACATGAAGTGGACAATCTTTTTGATACACCTGCAAAAGCggttaagaagaagaagaaggctGTGAAGCAGGATGAAGCGCCAAAATCTAAAAAACAGAAAGTGGATGAAGAGAATATCAAACTCAACACGACCACCACTGTCCAAATTCTGCATCTTAGGGACCTGACGGTTGGCACTCTGATGCTGGGTTGTGTGAAGGAAGTGTCAGATTTCGAGGTTGTAGTTGGTCTCCCGAGCGGCCTCGTTGGTTACCTGCCGATCTGCAACATCTGTGACGCCTACACCAACATTCTCAATGACAAACTGGACACTGATGATGGCCTAGAGGAAGTTGTCCCTCTTTCCAAACTCTTCACACTTGGAATGCTGATCAGATGTGTCGTGTCGTCTTTAGACTCTGCCAAAGAGGGTCATATTAGCCTTAAGTTGTCGATCAACCCAAAAGATGTGAACAAGGCGTTGAATTCAGTTGCTTTAAAGCCTGCAATGACACTGAGCGGCTGTGTGGAGAGCGTTGAAGATCACGGCTACCTGGTGGACATCGGAATTGGCGGCACTAAAGCTTTCCTGCCCAAAAAGAGCACATCCTCAAAACAAGATCTGTATGTGGGTCAGTATGTGCTGGTCCTGATAGAGGATGTCAAGGATAGCGGGCGTGTGGTGCGCCTGTCTCAGAATCCCCAGGCTCTTGTAAAGGCCTGCGCTCAGACCAAGCAAGGTTGGACTTTAGACAACCTCCTACCTGGACTGCTGATCCATGGATGTGTCAAGAGGGTCACTCCTCACGGACTTATAGTGACGTTTCTTTCGTCTTTCACCGGAGTGGTTGATTTTCTGCACCTTGATGAGGACAAGGAGTCTACTTACAGCAAAGGACAAGAgATCCTGGCGCGAATTCTGTACGTGCAGCCTTCGACCCGTCAAGTGGGTCTCTCTCTGCGCAGTCATCTGCTACCACCAGGCGGCGCTGTGCTGGATCTGCACTTCAGTGAGCGAGTGGGTGAGGTGGTGCAGGGCTGTCAGATGACTAGTTTACACCATTACTCAGGAGCCCTGATGAAGATGCTTGACGGTAGCAGAGCCTTTGTGCATAGAAACCTGCTGAAGGAGCCCAAAGAAGAGCTCGACACAAACCACCTGATGTCCCAGACTCAGCATATTCTGAGGATCATAAATTACAGTCCAATAGAGCAGATCTACCAAGCCACGCTCCGCTGgagcTCTATTGAAACGCCGTTCTTTAGCTGTCAAGACATCAAAGTGGGACAAATTGTTGAGggtACAGTTACAGATTTGCAGAAACATGGCGTTTACGTGAGGATTGGGGAGCACATTAGAGGAATGATACCCAGAATTCACCTGGCTGATGTCACCCTGAAGAACCCAGAGAAAAAATTTTATCCGGGTCTGAAAGTCAAGTGCAGGGTTTTGTTAGTGGAGGCTCAGAAGAAGCTGTTGATCTTGACCAGGAAGAAGGCGCTAGTGGAGTCCACGCTCCCCATCTTCCAGTCGTACTCTGACGCCCGGCCGGGCCGCATTTCTCATGGCTTCGTCGTGTGTATAAAGGAGTTCGGCTGCATCGTTCGCTTTTATGAAGATGTGAAGGGTCTGGTTCCCATGCAGGAGCTGACCACCGAAACAGTCACAAATCCAGAGGAGCTCTTCTTCGTTGGACAGGTTGTCAAGGTCAAAGTCTTGAAGTGCGACGAGGAAAAAAAGATGCTCCGATTGTCCTTCAAGTCTGTTACTGAGGAGGATGTCAGAGAGGAGCAGATCGCCAAATTTGACTTCATTGTTGGAAAGATGGTCGATGCAAGAGTGTGCCGAAAAGTCCTGAATGGTCTTGAGGTCTCCATTATTCCTGAGGAAGTGCAAGCTTTCCTACCCACAACACATCTCTCTGATCACGTGACCAACTGTTTGCCCCTGTGGATGGCGCTGGAGGAAGGCGACACCATCTGTAATCTGATGTGTCTCACCAACTACAAAAAGAAGGGCATTGTTCTCACCAAGAAACCGCACCTGAAGGCTTATATTGAGGACGGTGCCATCCCGAAGAACTTCTCTGAGCTCCAGGTCGGGATGCAGATGGTCGGCTGGGTGAAGAACATCATGCCGTATGGAGTCTTCATCAGTTTCCCATACGGAGTCTTCGGCCTTGCTCCTATAGCCAACATGGGTGACCAGTTCATCAAGGAAACCTCAGGCATCTTTGATATTGACCAGACGGTTGTTGCCAAGGTGACTAATCTGGATGAAGAGAAGCAAAGGTTTCTGGTCAGTCTGAAGCTGTCTGAACTGAGTCTCTCTGAGAACGAGTTTCACACCAGACTGATTCAGGGTCTGAAGGAAAGAAGGAATATTTCGGAGATGAGGGCTGGCAGAGGGGACTCTGACGTCCTGTGGAAGCTCTCTGCTTTAACTGTAGGAGATCAAATGAAGATGATTGTGGGAGATACTACAGAGGATGGTTCGGTCATGCTGACCTCAGATCAGCTCAGTGGTGTCACTGTATTGGCCTCAAAGTACCACAAAGAAGGTGTGAATTTAACTCCGGGCTGCAAACTCAACGCAGTAATTCTCCACATTGACTTTGTAAAGTCTCAAGTTCATGTATCGCTGCGTCCAAAGCTAAACATAAAGAAAGAGAAGttgGAAAAGGACGCCAGATTTACAGCAAAAGTCCAGTTTGCCGACAAAGACTTTGCTGTCGTCTCATTGGCTACCACCAGTGATCTGACCTTCTTTCCCACCCGCCCtcatttaaacagcatttttgacTCAAAGAAGTTTTCCGTTGGCTCCTGTTTGGACGTGAAAGTCGATGATCCCAACTGTGAGGATTTAGCGGGCTTTCCACTTATCTCCTATCAGTCTTCGAATGCCAAACACGAGCAGCACAAACCCAATGAAGAGCGTCTCGGGGAGCTGATGAAGGTCACGGTGAAGAAATTGAAGGCGCTCTGTGTGTTGGTGAATCTGCCGTCGGGAAACACTGGAAGAGTCCACGTCTCACAGATATTGGAGTTTCCTGACATCGGCAGCTGCCCAACATCAGTTCTCAAGGTCGGGATGGAGATGGAGGCCCGAGTAATCGGAGGACGTGCAGTTCGTGCccacaacTTCCTGGCAATCTCTCATCCAGATTATAATATCTCCATCCCTGAACTCAGTTTTCTAGAAAGTAAACTGAAGGTTTCAGACATGGTCAACAAACTGGAAAAATACAAGCCTGGAGATGATATCATATGCTTCCCGTCAAAATACATCAAAAAAGAGCAGCTCTTGGAAGTTCATGTCAAGCCCGACATCATGGGAGCCGTTCCTCTGTTAGCCATGTGTAACAAACTTGGGCTCTCCAAACACCCTCAGAGGCTTTTTAAACCAGGACAGGCCCTTTCCGCAAAGGTTGTCAGTGTTGATCCCAAGAAGCCTATCCAGTTTTCCCTGTCGCTCACAGGGACGCACAAACTGGAGCCAGGCATGAACACCTTGGCCATGGTTCAGAAAATCCAGCCTCACAAGGGACTGATGCTCGCGCTCCCATATGAGAACACGGGTCTTGCTCACCTAACGGATCTCTCTGATTCGTACACGGAGAAGCCACTGGAGTCCTACAAAGAGGGCCAGATCATCCGGTGTCATGTCATAGAGCAAAAGATAAAGGAATTCAACGTTTCGTTACGTCCATCCAGACTGAATAAGGACAAGCATGACATTGTAGAAGACCCAGAAATTCAGTCAATTGCTGATATAAAAGAGGGTCAGAGTATCAGAGGATATGTGTCGTCTGTTAACGACCAAGGCATATTTCTAAGGTTATCAAGGACTATAACAGGAAGAGTTCTGTTCCAAAATGCTACAAAATACTATATGAATGACCCAAAAGTCCTCATCAAACACGTTGGCCAGAATGCATTGGTGGCCGCAAAGGTTCTTAGCGTGGACTCTGAGAACCTCCATGTGAACCTGTCGCTGCTGTCAAAAGACACTGGGAAACCAGATCTGCTCCCAGAATCTCTTGAACTGCCACTGCGTCTGACAGGAGAGGAGAAGgagaaacatgacaaaaaagcTGCTGTCAAGAGAAAAAGAACTCTATCTGAGAGCCAGCAGCAAGACAATGAGAATACTGAACAGAAGACCAAACGGATAAAGGTCGATGAAGAATGCAGACTGGTTGAAGAGCCCAGAGAACAGAAGGAAACACTGAaggagaagaaaaagaaaaagaaatcgaAAAAGGAGGACAGTGACAGTGGTGTAGAGGTGTTCTTCAGAGAGACGGATGAGACTGTGTCGGACAAAAAGTCAGGCAAAGTAAAGGTTAAATGCAAGGAACAGGAACCAAACCGGCTTCAGGTGACATCCAGCTTCCCATGGGAGTCCACACTGGGCTCTTTAACACCTTTTGCTCCAGCAGACGACAACCAGAACTCCAGTGAGGATGAGGAGGAAGTCAAAAGCAAGCCGGCGAAGAAGTCCCGTAAAGAGCTGAAGCAGGAGCAGCAGAACACCGAGCAGAAGCTCAGCAAGCTGGAGGCCGAGCTCATGGACACGTCTGTACGGCCCGATAACTCAACGGCGTTTGAGCGTCTGCTCCTGTCGTCTCCAGACAGCTCCCTCCTCTGGCTGCAGTACATGGCTTTCCATCTACAGGCCACGCAGATCGAGCAGGCCCGCGCCGTCGCCGAGAGAGCCCTCAAAACCATCTCCTTCAGAGAGGAGCAGGAGAAGCTGAACATTTGGGTGGCCATGCTGAATTTGGAGAACATGTACGGGACACCAGACAGCTTGCAGAAAGTTTTCGAACGGGCCATCCAGTACTGTGAACCTCTTCTCGTGTACCAGCAGCTGGCCGACATTTATGCCAAGTCGGAAAAGATCAAAGAGGCTGAGAGTCTTTATAAAAGCATGGTGAAGCGCTTCAGACAGGACAAAGCAGTTTATCTGAGTTACGGCACTTTCCTGCTTCGACAACGGCAGAGCGACGCTGCCAATGCCCTTCTGCAGAGGGCGCTGCAGAGCCTGTCCAGTAAAGAACATGTGGACCTCATTGCCAGATTTGCTCGGCTGGAGTTTCAGTTTGGGAATTCAGAGAAAGCCAAGTCTATGTTCGACAAGGTCCTCACTACATACCCCAAACGCACAGACCTGTGGTCTGTCTTCATAGACTTAATGGTGAAGCATGGCTCTCAGAAGGAAGTGAGGGAGCTTTTTGATCGCGTGATTCACCTGAGCGTGTCGGTTAAGAAGATCAAGTTCTTCTTCAAGCGTTACCTGGAGTACGAGAAGAAGAACGGCACACCTGAGACCATCCAAGTGGTCAAACAGAAAGCTCTCGAATATGTGGAGTCAAAAGGAGCTGAAGCCACCAGCTAATGCACCTGTTTTACATTTAACGACAAAGACTCTTTTATTGTCCAGCCAAAAGTTCATTCCTCTGCTTTTTTCAGCTATTTAAAAGTGTCTATAGGTGCATTAGTGACGTTTGCATCTGTTAAATCATTAAATGtgataaaatatgattatgaatTAAAAACAGTCCTGTAATGTGGAGACATGCAATAAAGATCTTACTTTCTAAAGCTCCAGaaa
>TCONS_00001054
aTTCctatctctatacatgtattacTAGAAACCATTCATATCAAACTGCTGTTTGTGCATGATTTCTATTTATTTGTACACACTGCAAACCTTTACTACTTCTCTTTGGTTTTCAGTAAACTGAAGGTTTCAGACATGGTCAACAAACTGGAAAAATACAAGCCTGGAGATGATATCATATGCTTCCCGTCAAAATACATCAAAAAAGAGCAGCTCTTGGAAGTTCATGTCAAGCCCGACATCATGGGAGCCGTTCCTCTGTTAGCCATGTGTAACAAACTTGGGCTCTCCAAACACCCTCAGAGGCTTTTTAAACCAGGACAGGCCCTTTCCGCAAAGGTTGTCAGTGTTGATCCCAAGAAGCCTATCCAGTTTTCCCTGTCGCTCACAGGGACGCACAAACTGGAGCCAGGCATGAACACCTTGGCCATGGTTCAGAAAATCCAGCCTCACAAGGGACTGATGCTCGCGCTCCCATATGAGAACACGGGTCTTGCTCACCTAACGGATCTCTCTGATTCGTACACGGAGAAGCCACTGGAGTCCTACAAAGAGGGCCAGATCATCCGGTGTCATGTCATAGAGCAAAAGATAAAGGAATTCAACGTTTCGTTACGTCCATCCAGACTGAATAAGGACAAGCATGACATTGTAGAAGACCCAGAAATTCAGTCAATTGCTGATATAAAAGAGGGTCAGAGTATCAGAGGATATGTGTCGTCTGTTAACGACCAAGGCATATTTCTAAGGTTATCAAGGACTATAACAGGAAGAGTTCTGTTCCAAAATGCTACAAAATACTATATGAATGACCCAAAAGTCCTCATCAAACACGTTGGCCAGAATGCATT

Function

symbol description
pdcd11 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing and rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; midbrain; musculature system; and segmental plate. Orthologous to human PDCD11 (programmed cell death 11).

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-4076 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing and rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; midbrain; musculature system; and segmental plate. Orthologous to human PDCD11 (programmed cell death 11).

Ensembl:

ensembl_id ENSDARG00000052480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001053 False 5793 mRNA 0.48 36 49435017 49481173
TCONS_00001054 True 851 processed_transcript 0.43 7 49464741 49472325

Neighbor

gene id symbol gene type direction distance location
XLOC_000619 taf5 coding upstream 2870 49415281 ~ 49432147 (+)
XLOC_000618 msx1b coding upstream 79704 49352900 ~ 49355313 (+)
XLOC_000617 caly coding upstream 139958 49266886 ~ 49295059 (+)
XLOC_000616 NA coding upstream 182363 49244352 ~ 49252654 (+)
XLOC_000615 NA coding upstream 283010 49134464 ~ 49152007 (+)
XLOC_000621 ITPRIP coding downstream 29036 49510209 ~ 49512544 (+)
XLOC_000622 col17a1a coding downstream 87162 49568335 ~ 49605854 (+)
XLOC_000623 BX321880.1 coding downstream 109528 49590701 ~ 49590823 (+)
XLOC_000624 tsga10 coding downstream 169839 49651012 ~ 49674006 (+)
XLOC_000625 si:ch211-149l1.2 coding downstream 201139 49682312 ~ 49698110 (+)
XLOC_000614 CR788248.1 non-coding upstream 507968 48923328 ~ 48927049 (+)
XLOC_000613 NA non-coding upstream 598095 48835224 ~ 48836922 (+)
XLOC_000611 NA non-coding upstream 1202705 48231856 ~ 48232312 (+)
XLOC_000626 NA non-coding downstream 218209 49699382 ~ 49774940 (+)
XLOC_000628 NA non-coding downstream 439617 49920790 ~ 49922873 (+)
XLOC_000632 NA non-coding downstream 908146 50389319 ~ 50392789 (+)
XLOC_000633 NA non-coding downstream 1046961 50528134 ~ 50531694 (+)

Expression


Co-expression Network