AMCG00019665


Basic Information

Item Value
gene id AMCG00019665
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 35934796 ~ 35981536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019665
ATGCTAGGCGAGGGCAAAGATAGCCGCTCATTCCTGATATACAATGAAGATCACAAAAAATGTGTGACTACAGACAGTGCCAGTTCTCTGGAGAGCACCACATGTGACCCCAATGATGTGTCCCAGGAGTTCCGCTGGGTGTCCAGCAACCGACTGCTGAGCATCTCCCTGAAGCTGTGTCTCGGGGCGATAAGTAAGAGCGACTGGGTGAAGATACTGCCAGTGCCCTGCGATGAGAATAGTGAACTGCAGAAATGGGAATGCAAAAACGATACCCTTTTTTCCCTAAAGGGAgaagccttttattttaattatggtaACAAGAATGAGAAGAACATCATGTTATACAAAGGATCAGGAATATGGAGCAGGTGGAAAATCTACGGCACTAAAGATGATCTGTGCTCCCGAGGATATGAAGaTGTTTTTACAATTGGAGGCAATTCCAATGGATTACCATGTCAGTTCCCTTTCAAGTTTGAAGGCAAGTGGTATGCTGAATGCACTTTGGATGGCAGGTCTGATGGCCAGATTTGGTGTGCAACATCAACTGATTACACCAAAGATAAGAAATGGGGCTTGTGTCCAACAAAATCAACGTCTGGCTGGGATACCCATCCTGTGACTGGCATTCTCTACCAGAAGAACATTCAGTCAGTGTTGACCTGGCACCAAGCACGGAAGAGCTGCCAGCAACAGGAGGCAGACTTACTGAGTATTGTTGAACTACACGAGCAAACCTACCTCTCAGgaCACCCAGTTTCAGAGCCTGGACTCAACTGTGCTGTTTTAAATCCGGGAAAGGCGGCAAAATGGGAAGACAAAGAGTGTTCAAAGAAACTTGGGTATATCTGCAAGAAAGGAAACGCGACGAATATTACCCCTGTGATTCCAGTGAAGGATCAGCCAAGCTATTGCCAGAATCACTGGGTACCATATGCTGGCCATTGCTATTACTTGGAACGAAGCAAAAAAATATGGAAAGAGGCTTTGTCTGCGTGCCATAAAGAAGGAGGAGATCTTGCGAGCATACATAACATTGAGGAACACAGCTTTGTTATTTCACAACTGGGATACATGTCATCTGATGAGCTCTGGATAGGACTGAATGACCAGAAGATGTCGATGCTGTTTGAATGGAGTGACAGATCTCATGTAACATTTACCAAATGGAAAACGGGGGAACCAAGCCATGCCATCAGCCTGCAGGAGGACTGTGTGCTCATGAAAGGAGAGGAAGGGAAATGGGCAGATCATGTCTGTGAAAAGCCGTACGGATACATTTGTAAGAAAAAGGCCTCAACCCACCCACAAGGTTCACCTGAAGTCGTGAGTCCAGGCTGTACAAGAGGTTGGATCAGAAATGGCGTATACTGCTACTATGTTGGATCTGAGACGCAGACATTTGACAGTGCAAAGGACAAGTGTGGCAGTTCAGGGAGCAGTTTGATTGATATTCAGGACAGATATGAAAATGCATTCCTTGTTAGTCTGGTTGGACTGCGGCCTGAGAAATATTTCTGGATAGGCCTGTCCAACACCGTGGATCGCTTATCATTTGTATGGACCAATTCTTCAAAAGTGTATTTCACTCACTTCAATTCCGGGATGCCAGGCAGAAAACAGGGTTGTGTTGCCATGACAACAGGGACAAATGCTGGATTATGGGATGTTTTAACCTGTGACAGCAAAGAAAAGTATATCTGCAAGCAGCTGGCTGTTGGAGTGACAGTACCCCCACCTCCTACAACACCTACACCGGCTTCTTGTCCTGACGATTGGCAATCGTATGGCCAGGGCCAATATTGTGCCAGGCtgtataagaaaaatacaaagaacaaaaaaacctgGTTTGAAGCTCGTGATTTCTGTGTGGCAATAGGTGGTGATCTGCTAAGTATTCACAGTGATGATGAACTTCATGACATATATCGTGACCTGACTCATTACTACAATGAAAATGCCTGGATTGGTATCAACAACCTGGATCCCAATGCTGGATACGTGTGGAGTGATGGATCTCCGGAGTCACACCAAAACCTCCCCCCACTTTTACTCCATCAACCTAATGTCACAGAAGATGGCTGGTTGTCTAATGGcaaatatcaatattatattaatactcAAAAACTTTCTATGGAGGATGCTAGAAACTACTGTAAGAAGAATTTTGGTGACCTTGTTGTCATAGAAGATCAAAGTGAAAGGTTGTTTTTATGGAAACAGATTTCCAGAGGTGATGAAGACCAATATTACATTGCATTGACTGTTGGTCTTGATAAAACATTCCAGTGGCTAGATGGATCACCTGTAACTTACGTGGCATGGGAAAATAATGAGCCAAACTTTGCCAACAATGATGAAAACTGTGTCACCATGTATAAAAGTATGGGGTTCTGGAATGACATAAACTGCGGGATGACTTTTGCTTCTATATGTAAAAGAAGTACAGAGTTTGTGAACACCACAATAGCGCCAACAGTTGTGCCAGAAGGAGGTTGCCCCCCTGACTGGATGCTTTTTGACAAAAAGTGCTTCAAGATTATTGGTAAGGATGTTTCGGACAGAAAGGGGTGGCAGGCTGCAAGAAGCTACTGCATAGAGTTGGGTGGAAATTTAGTTTCCATACTTAATGAGAGACAGCAAGCGTTTCTGACCACTAAGCTTCTGGACATGCCAGTGGATGCATGGATAGGGTTGAATGACATCAACAGAGAAATGCGCTTCCTCTGGACTGATGGGAAAGCAGTCTCTTACACCAACTGGGCAAAGGGTAACCCGGTGTCCATGCCTGATGGAAGATACCTCTACATAGATGAGGAATATGACTGTACGTTGATGGCAACCACTGCCAGCATTGCTGGACAGTGGAAGGTGGAGGAATGTTCTTCAAATAGGTCTTTCATTTGCCAGAGAAAGATCGATCCTATGATTACTAATCCAGCAACAACTGTATCACCAAGAGATTTTGTCAAGTTTGGTAATAACTcctataaaattataaatcagaAACTGAATTGGGATGAGGCCAGAAGGCAATGCAAAGCAGATGACGCAGATCTGGCCAGTGTTTTGGATTCTATAAATCAGGCCTACATTTCACttcagacacatacatacaaagagCCCATGTGGATCGGATTGAACAGTAACGTGACCTCAGCATATTTCACGTGGATTGATAACTGGAAGATGCGTTTTACTAAGTGGGCTGCAGGAGAACCAAAGAATAACATTGCTTGTGTTTACATTGACGTTGATGGGACATGGAAGACCGCACCCTGTACTAACACCTACTACTCTGTGTGCAAAAATTCAAAAGATATTGCTCCAACTGATCCACCTCAGCTTCCCGGTGTTTGTCCTGAATCGAAAAAGAAGCGAGTGTGGGTGCCATTCCGGGGGCACTGCTACAGCTTCCAGTCCACTGCGTTCGACAGCTGGCCCCACGCCTCCATGGAGTGTCTGAGACTAGGTGCTTCCCTTCTGAGCATTGAGGATCCTTTGGAATCTGCATTTATTCAGCACAACACTGACCTGCTGCAAGACCGTGCCAAGTCTTTCTGGATAGGATTCTACAAGAACGTGAATGggCAATGGCTTTGGTTAGACAACAGTGTGGTGGATTACACAAACTGGAACAGTGGGGAACCGTCAGAACACAACGAGGAATGTGTTGAAATATACTCTGACACTGGGAAGTGGAACAATATCAACTGCAATTCATATAAACCCTATATCTGCAAAACAGCAAAAGTTATTCCACCTACTGAAAAAACTCCAAATCACCAGCCTGtGATTAACAATGAAAAACCTGCTCATGGCTATGCTGGAATTGTGATTGCTGTATTAATTCTCATCCTAACCGGAAGCGGACTGGCTGCCTTCTTCATGTACAAGAGAAGGCGTACGCTTATCCCAGATGGGTCCAACTTTGATAACTCTCTATATTTTAACCCAGATACCTCTCATTCCAGTCTTGACACCAAAGTCCTGGTAGCTAACATTGAGCAGAATGAACAGGCTACAATCTAATTATATgtgcagtaaaacaataaaaaataattaaaaaagtattaaccTTTCTCCTGGTTGAAGACTGGTTTTAAAATCTACATACATTTGACACACAGCTTCCAGATTGTGATTCAGTGTCTTCTTCTCTGACCCAGATGTAAGCCGTGAAATATAAGTCCATTCTCAGTCCAACAGTGTGTTAGAAGTTCAATATTAATCCCCTTTGAGTATGGGTATGGTGTTTTTAGAATTACCATCCAAGATGTTCTGGAGGGAAAACACCATTAACACAGCAGCCGCACTCAGGGAAAATGAGGCGACTCCATTTTCCATGGAGACattcactttcaaataaaaaattgacACGTTTTCTGTCCAAAAATGTATCGGCACATTTTCCCAGCTAGCTATATACACGAGATTGTTAAATAATGATATAAGGGTTGTTATATCAGTACTGTTTTGCACTGTAATTAAATTCTGAACCCTATGCagttaatcaaatatataacatatttcaaatttagattttattgCCAGTGTTGTTAGTGTTAACTGCACCACAATCATTACTTTCCAAACAGCAAAACTCTCAACAGCCATGAGAATACGTTTGCATGTGCTTCATTACAATATCATTGTTCTCCCAATGAATGTGCTCAGTGTCGATGGTATGTTGACAGTCACTCAGGCATTTCTTTCATTCACAACTTAGTTTAGTTCTTAGTGCCTCTTGACCTTTTCACAATGTTCCATCTTGCCTGACATTGTTTTCCCTTCATAGACATTTTGGATGTGCAAACATTGTGTTGGATTGTAAATAGAGattatcatacatttttacaagCAGGTGAATGTGCAGGTGGTTTCAACTGGCTTCCACAACAACTCTGCTGTAAACACCCCTCagtaatttttaaatcaaactttgcTTCCTGTTGTGTGTAAGTAAATGCAAACTGTTTAAATTTACAGAAGAATAACtaaattcatatgtttttttggccatcttttgtgtatatttccttaaactgatacaaaatatcaaaagtAAGCCTGGATATGTAGTGCACATACTAGAGATGTATTTATTCCccatcatctcaattagtcatttGGTCCTGTTGGAAAGAATTTCTTGGTACAGGAGTTTCAGTCAATCagctttatttttgaatgaattTGCAGTGATACAGAAGCAAAAGCTGCCAATAATACACTCAAAGTTTTGTATAGTATTGAATGTATGGGTAGGTTTCACAGCTTACATCTTATACTAGAAACATGTATCTTGTCCCAAGATATAGAAGTAGCTCAGTACATGGTTTCAAGGTCTTGTTCCTACCAAATACAGTGGCATCTCAGTTTAACTTGGCAGTACCAAATGCTCACAAGATAATGAACATTAGGACAGTATTATCCTTGCACATAAGCAGAATTAATctcacacacagaataaaagcaATGATTATATGTATTCAGAAAAGCATCGACCATCTTAAAAGCAATGGtatacatattaaagaaaagcaaaattctaaaaaaaataatggccTATGGGATACCAGTATAATGGTTCAATTTGATCCTGTCAGTTTCATTAATTGAAGTGtgtgaatacatttcagatttacGTCATATGTAGTTATGATGCAATATTAGACTTCAACATAAATAATCtaatcttaaaaaatgtaaatgggatATTACACTGCATGTAGATGTTTCAGAACGGTGGAATGgtaattaatgaaaatcatattttattaaatgagaTCTGGGAAGGCTGAGAACTTACAAAGTAGATGATTGTGATCAGGAGAGAAGATGTAGGGCCCACATGAAGGAATTTGCACATGAATGGTGCATATGATGTTGCCATTTCACTCATCTCATTAAAAGGAAACGGAATTTGTCCCAGTAAGTTAATGAGCTTGTAAACCTTCTAAATTTAAGTTATATTAATTGAGGTgacaaaagtgtatttattattattattattattattattattattattattattattattattattattatttcttggcagactacCCAGAGATAtagcataaatacattttattcatagaTGTACGCACTATTACAACTTCCATTTGTTTGGCAGAGGTTGAAAGTACTGATTGAGGCAAAGTCAccagcaaaaacaaagaaaaaactggAACAAAAGTAGGAAAGACATACCTTGATACTATACCAAAGTGGCTAGAACATTTTGGGAGGtaattaagaattaaataaatacaatatacagttatagatccttttgtttaaaatggaaacaatatattaattatcctataaaatcattaattaaaatcaggACCCACAGAGTTCACTGATTACCGtacccaaaacattttaattatttttaagtctaCATGCTGAAAGGTAACCacataattatgtaaatattatggACAAGATAGCAGtaactcaatatatatatatatatatatatatatatatatatatatatattatttttttttattttttttgggaTATCTGTgtgtaagaagaaaaaaaagatgtacaACTTATTTTCAATGTTCCTTTAATACATCAGTTGTTGAATATGTTCTAGTTTACtgtaataaatcattaatagtTGACCAAGTTAATTCACTCTGATTTTAAGCGTAAGTCTGATTTCTAgagagaacaaaacacaaaacgaAAACATAAACAATCGCTTTTGCCAGTTTCATACTGCATCACTGGAGAATCCAGTTCACAGCTGcttgaaaatgtgttgatgAATGATAACATTCTCTTCTGTGAAACCtcagtctttttaaatgtcttctttttttgtgtaaattgtaTGATGGCTcaaattcaatgtatttgttgaCTTTCTGTACTTGTTGGTTTATATGTCATTAAATTCCTAAGTTACAG
>TU44973
aaaaaaaagatgtacaACTTATTTTCAATGTTCCTTTAATACATCAGTTGTTGAATATGTTCTAGTTTACtgtaataaatcattaatagtTGACCAAGTTAATTCACTCTGATTTTAAGCGTAAGTCTGATTTCTAgagagaacaaaacacaaaacgaAAACATAAACAATCGCTTTTGCCAGTTTCATACTGCATCACTGGAGAATCCAGTTCACAGCTGcttgaaaatgtgttgatgAATGATAACATTCTCTTCTGTGAAACCtcagtctttttaaatgtcttctttttttgtgtaaattgtaTGATGGCTcaaattcaatgtatttgttgaCTTTCTGTACTTGTTGGTTTATATGTCATTAAATTCCTAAGTTACAGTGAA

Function

GO: NA

KEGG:

id description
K06560 MRC, CD206, CD280; mannose receptor, C type

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019665 True 6942 mRNA 0.39 28 35934800 35981536
TU44973 False 386 lncRNA 0.30 1 35934796 35935181

Neighbor

gene id symbol gene type direction distance location
AMCG00019664 NA coding downstream 8455 35912844 ~ 35926341 (-)
AMCG00019666 slc39a12 coding downstream 32019 35895854 ~ 35902777 (-)
AMCG00019661 NA coding downstream 171555 35742867 ~ 35763241 (-)
AMCG00019654 arl5b,LOC107591025,LOC103373092,LOC107723111,LOC107690731,LOC103034648 coding downstream 220062 35696439 ~ 35714734 (-)
AMCG00019657 NA coding downstream 244138 35607647 ~ 35690658 (-)
AMCG00019663 NA coding upstream 17845 35999381 ~ 36014706 (-)
AMCG00019667 stam coding upstream 39820 36021356 ~ 36042117 (-)
AMCG00019668 NA coding upstream 88048 36069584 ~ 36078155 (-)
AMCG00019673 enosf1 coding upstream 215362 36196898 ~ 36216373 (-)
AMCG00019672 NA coding upstream 235768 36217304 ~ 36240381 (-)
G35810 NA non-coding downstream 1283809 34650702 ~ 34650987 (-)
G35803 NA non-coding downstream 1284565 34645135 ~ 34650231 (-)
G35792 NA non-coding downstream 1356324 34506033 ~ 34578472 (-)
G35735 NA non-coding downstream 1871662 33996555 ~ 34063134 (-)
G35690 NA non-coding downstream 2154341 33780221 ~ 33780455 (-)
G36016 NA non-coding upstream 72943 36054479 ~ 36061297 (-)
G36038 NA non-coding upstream 186430 36167966 ~ 36168171 (-)
G36074 NA non-coding upstream 417876 36399412 ~ 36399659 (-)
G36080 NA non-coding upstream 556151 36537687 ~ 36537903 (-)
G36082 NA non-coding upstream 585393 36566929 ~ 36567264 (-)
G35867 NA other downstream 879352 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 1412526 34510733 ~ 34522270 (-)
G35476 LOC107575789 other downstream 3701398 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 4507213 31422029 ~ 31427583 (-)
G35101 NA other downstream 6249494 29679229 ~ 29685302 (-)
AMCG00019698 NA other upstream 1907908 37889444 ~ 38110224 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 3435351 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 3988639 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 6089526 42071062 ~ 42078932 (-)
G36817 NA other upstream 6562580 42544116 ~ 42544524 (-)

Expression


Co-expression Network