AMCG00019667 (stam)


Basic Information

Item Value
gene id AMCG00019667
gene name stam
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36021356 ~ 36042117 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019667
CCACAATGCCTTAgtcgccgccgccgccgccgctgctgctgctgcaggagtgTCTGTGACTCGATATTGAGATTGTGTCTGGacttgtctgtttttatttatttatgtatgtatgtatgttcttatttatttactaatcgCTGCCAACAGAAACAAGCGAAGAAAGATCAAAAAGGGAAGAGACTGTGGTTTTAAATTTTGCGATGCCTCTCTTTACATCTAATCCATTCGACCAAGATGTGGAGAAAGCAACCAGTGAGATGAACACTGCCGAGGACTGGGGCCTTATATTGGATATCTGCGATAAAGTAGGACAGTCACGCACAGGGCCCAAAGAATGCCTCCGGTCTATAATGAGAAGAGTGAACCACAAGGATCCTCATGTGGCTATGCAAGCACTTACACTTCTTGGAGCATGTGTATCAAATTGTGGCAAAATCTTTCACCTAGAAGTTTGCTCAAGAGATTTTGCTAGTGAAGTCAGCAATGTCTTAAATAAGGGTCACCCCAAAGTCTGCGAGAAGTTGAAAGCTCTAATGGTGGAATGGGCTGAGGAGTTCCGGAATGACCCCCAGTTGAGTCTCATTTCGGCCATGATCAAGAATCTCAAAGAGCAGGGAGTGTCGTTTCCTGCTGCTGGCTCTCAGgCAGCAGAACAAGCTAAAGCAAGCCCTGCTTTAGTAGCTAAAGACCCCACCAACACTACAAATAAAAAGGAGGAAGAAGACTTGGCTAAAGCTATAGAGTTGTCATTAAAAGAACAAAGGCAACCGCAGCCGGCGCTCTCCAGTCTGTACCCCAGTGCCTCCAGCCTGGTAATGAACCATAAATCAGAGGGAAGGAAAGTGCGAGCCATCTACGACTTTGAAGCTGCAGAAGATAATGAACTGACATTTAAGTCAGGGGAAATCATCACAGTCCTGGATGACAGtgatcCCAACTGGTGGAAGGGAGAAACATATCAAGGAGTCGGCTTATTCCCTTCCAATTTCGTGACTGCAGACCTGACTGCCGAGCCTGAAATGAtcaaaacagagaagaaaactgTGCAGTTCAGCGACGAAGTTCAAGTGGAAACTATAGAACCTGAACCGGAGCCGGTTTATATCGATGAGgAAAGAATTGACCAATTGCTACAGATGATTCAAAGTGTGGACCCTTCAGACAATCAGAAAGACTCAACAGAACTGCTGCACCTGGAAGGTGCCTGCAATCAAATGGGACCTCTTATTGATCAGAAACTTGAAGATATTGACAgGAAGCACTCAGAATTGTCAGAGCTGAACGTAAAGGTGATGGAGGCCCTCTCACTGTATGCCAAGCTGATGAATGAAGATCCAATGTATGCCATGTATGCAAAACTACAGAGTCAGCAGTACTATGTGCAACAGCCTCCCTCAGGCAATCAGcagGTGTACCCCGGCCCAACGCAGAGTGGCACATACGCAGTGACTGGCAGTGGTGTCATGGGCACGCACCATTGTGAATTCGACTCCGGGAAATGCGTACATGAACCAGCCGCCTGTGTACAGCCCTCTGCAGCACGCTGCGGTGGCACCGGGCACGGACATGACCTACCAGAACACTGCCACAAATGTATCCCAGATGCCAAGCTACACCATTGCCTCTCAAAGTACGGGGGTCTCCTGTCACTGTATTTCACCATCTTGAAAATTCAGGAAACGTTGGACATCATTTTTATTGACGAG

Function

symbol description
stam Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in early endosome membrane. Predicted to be part of ESCRT-0 complex. Is expressed in immature eye and nervous system. Orthologous to human STAM (signal transducing adaptor molecule).

NR:

description
signal transducing adapter molecule 1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019667 True 1709 mRNA 0.47 15 36021356 36042117

Neighbor

gene id symbol gene type direction distance location
AMCG00019663 NA coding downstream 6650 35999381 ~ 36014706 (-)
AMCG00019664 NA coding downstream 95015 35912844 ~ 35926341 (-)
AMCG00019666 slc39a12 coding downstream 118579 35895854 ~ 35902777 (-)
AMCG00019661 NA coding downstream 258115 35742867 ~ 35763241 (-)
AMCG00019654 arl5b,LOC107591025,LOC103373092,LOC107723111,LOC107690731,LOC103034648 coding downstream 306622 35696439 ~ 35714734 (-)
AMCG00019668 NA coding upstream 27467 36069584 ~ 36078155 (-)
AMCG00019673 enosf1 coding upstream 154781 36196898 ~ 36216373 (-)
AMCG00019672 NA coding upstream 175187 36217304 ~ 36240381 (-)
AMCG00019674 NA coding upstream 603250 36645367 ~ 36715736 (-)
AMCG00019675 NA coding upstream 673820 36715937 ~ 36742382 (-)
G35810 NA non-coding downstream 1370369 34650702 ~ 34650987 (-)
G35803 NA non-coding downstream 1371125 34645135 ~ 34650231 (-)
G35792 NA non-coding downstream 1442884 34506033 ~ 34578472 (-)
G35735 NA non-coding downstream 1958222 33996555 ~ 34063134 (-)
G35690 NA non-coding downstream 2240901 33780221 ~ 33780455 (-)
G36016 NA non-coding upstream 12362 36054479 ~ 36061297 (-)
G36038 NA non-coding upstream 125849 36167966 ~ 36168171 (-)
G36074 NA non-coding upstream 357295 36399412 ~ 36399659 (-)
G36080 NA non-coding upstream 495570 36537687 ~ 36537903 (-)
G36082 NA non-coding upstream 524812 36566929 ~ 36567264 (-)
AMCG00019665 NA other downstream 39820 35934796 ~ 35981536 (-)
G35867 NA other downstream 965912 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 1499086 34510733 ~ 34522270 (-)
G35476 LOC107575789 other downstream 3787958 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 4593773 31422029 ~ 31427583 (-)
AMCG00019698 NA other upstream 1847327 37889444 ~ 38110224 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 3374770 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 3928058 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 6028945 42071062 ~ 42078932 (-)
G36817 NA other upstream 6501999 42544116 ~ 42544524 (-)

Expression


Co-expression Network