AMCG00019677


Basic Information

Item Value
gene id AMCG00019677
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37091023 ~ 37169287 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019677
ATGGCGGCGGATAGCAACAACCAGAACAGCAACAACAGTCAGACATTGCAGCTCCCCACGGTGTCCTGCGACCCCAGCACCCCAGGACCGTCGGGGTTTTCACGGAGAGTGTTTGTCTTTGACTGCCGTGTGGAAAACAATAATCTCTGTGAGAAAGTGTTGGAGAGTGGGAGCATGACACTCGCGGATTTCACTGGCGTAGTTTGCAAGgtgtttAGTATTCGTCCGGATGAAACTTATGTTTTGACGACAACAGCTAGGAAACAAATTGATGAGGCCCGATTTGAAGAAATTGTAGAGGGGAATACTTTGTACGTGCTGCACTCTGTTGATCAGATCTTGCCAGTCGCAACAAGGGAACATATTGAGTTCCTTCCGCACTATGACACAATTGTTAAAAGTGGCATGTATGAGTACTATGCCAGTGAAGGGCAAAAAGCTTTACCTTATGCGTTTGCTGAATTGATAGACAATGCTTTGTCAGCAACCTCACAGAACAATGACATCAGGTCCATTGACATTAGATTGCTATTTGATGAATCCCATGGTAAACCTGCAGTAGTTGTCTTGGATAATGGCAGTGGCATGTCAATCAAGCAGCTCAATAACTGGGCTGTTTACAGGTTGTCCAAATTTTCAAGAAAAGACCATGAATTTGAAAGtgaTCATAGTGGTTATATTCGACCATCTCCAGTGCCTCGCAGCTTGAACAGTGACATATCCTACTTTGGAGTAGGTGGAAAGCAAGCGGTTTTCTACATTGGACAGTCAACTAGAatGATCACTAGACCATTAGGATCTCTAGATGTTCATGAGCTTGTACTTTCAAAAGATGActttgaaaagaaagagaagaagaaggaagCGATATACAGCGGATTCATTAGAAACCGAAAGCCAGGTGATTCTTCTCACATAACTACTGACGATGAGCATTTCCTGCATGGTATTATAAGTGAAGAAAATGGAAAGGACAGTTTTACAGCTGTGGTGATCACTGGAGTTCAAGCAGAGCATGTCAGCTACTTGAAGAGCTACTTCCATCTATGGACCAGAGAGCTTGCGCatgtttatcattattatgtgCATGGACCCAATGGAAATGATATGAAGTCTGCAACGAGGAACACTGGTTTCATGCAGAACATTGATATTCAGATCTCCATGTCTGAGAAATCGAAGCAAACGAGAGTTGTTAATCTCAGAGAGATCAATGATGACATGCAGACTCGTTACATCAACTCCTCAGCAGACAGTTTTGAATTCAGGACACGTGTTGAAGATGATGGGGTTGTGGAGGGAATTATTAGATATCACCCTTTTCTTTATGATAATGAAACGTACCCCGATGACCCTAACATCGTCTCAAAACCaacagatgatgatgatgaagactGTATTACCCTTGATAAAGGAGCCAGGGGAAAGCGGcctatatttgaatgtttttggaATGGGCGATTGATACCTTACACTACAGTGGATGACTTTGAGTGGTGTTCTCCCCCAAAGAAGAGGGCCACTGTGCCTCTGGAGTGCTACAACAGGATCTCCGGCGTTCTCTTCACCAATGACAGGTTTCAGGTCAGCACTAACAAACTCACTTTCATGGATCTAGAACTGAGGCTGAAGGACAAGGACATTCTCTTCACACGGGTTGTGAATGGACAGGTGAAATCAGTCAAAACCCAGCCCATTTTCTATGGCAGTATAACTCAGTTCCTTCTGTTTGGAgatcatgatgatgatgtataTTCTACGGGAGGAGAAGTTCAGATTTCACTGGAACCAAAGGCACTCTATGATGAACTTAAAGTGATTccaatttcaaaaatagatCGAAATGTTTCCGTTAGTGTTATTAAGAAGTACATTGATGATGAAATGGCAAGGCTTCCAGACCGACTCTCAGTGACGTGGCCAGAAGGAGACGAATTGATTCAGAATGATGTTCGTTCTGCTGGAACTCCAGTTGGTGCAATTAGGATTGAGATACTGAATAAGAGAGGAGAAGCAATGCAAAAGCTACCTGGCGCTAGTCACAACGCATCAAAGAAATTGCTGGTTGAATTGAAGGTCACCTGGCATTCTCCCACTGGGGACATAGAAACAAACTCCCACATCAGTCAGCATGGAGGAAAATGGCcttactggtttaaaaaaatggAAAATCTTAACCAGCTGGGAAAGTACACGCTGAAGCTGCAGACAGTGCTAAATGAGAGCAATGCCGATACCTATGCTGGACAGCGTCTGCCTTCACAAGTATACGAATTCTCTATCAAAGAGGGAAAACCAGACCGGTTCTCTATAGGAACGCTGGAACCGCTGCTTCGTGTTGGAGTGCCCTTTAACATTCCTGTGGAGCTTCTCGATGAGTTTGGACATCCCACTCACTCGCCTGTGGATCTCAAACCAGTTCTGGAGAGCAGtgcccTGGACTTATCTTATGTTGCAACTGTGACAAAAGGAACTAATTGTGTCATTGAAGGTCCCCCATTCTCGCTCAGGGTAAAAGCAGAATCTGAAAACCTAGTTCTTGAAAATGGAGCATCTTTTCCTCTCCTAGTTGAGGTGCTTGATGAAGCCGGAAATATCACCGCTCAGCCGAAAATGACAGTCAGCTGTAAGtTTCTAGGTGCTCCAAACTTGCCAATGTACATAATAGACTGCAGCAACACTGGGGTGGGTACATTAACAGGTCCACCTGTGTATGTCAAAAACATCAAGAAGGATCAGACCATAAAGGCAAAAATTGAAATACCAAGCTGCAAGAATATAGAAGCAGTAGAAAAGACTGTAAAGTTGGTGCCTAGTAGACATGTGGCCAGATTAGAAATCTTAAGCGTTGATGGTGACAAAGCAACTCTACTAAAACAAGATGATGAGATCAGCTGGACAGCTGATTGTATGATGAAGGTAAACTGGACCCCCAAGTTAAAGAAGGAGGACCTCATTGAAGGAATTCTACCTGATGTGATGGTTCCCAATTCCATTAAAGACCCCCGTTACTGCCAAGTGTCATTTCAGGATGAACGCGTGTCACTCGAAAGATCTTTTACTGTCAGGCCTCTTCCAGATGAGCCAAAGCGCATTAAGGCTACTCTGAATGATttggaaattacagaccagtatgggaataaaacaaatgtattgtcatCATCTGCTGTGAATTCAGTTGGTGTTTCTTCTGAAGGGCTTGATAAATCCAGTTTACAAGTTATCTGGCAGgAAAGCTTGCAGTTAATTGTGATCAAAGGAATAAAGTTCACTCCCATAGCTCCTGGATCCAAAGAGCTGTGTTTTGCTTGGCGAAGCTTTGTGGAGTACATGCGTGTTAATCTGATTGCAGGACCCCCTGCACAGCTGCAATTTGTTGACTGGCCAAAGGCCGACAAGTTGTGTGATCAATGGGCCAATCCAACCTGTGACCCACAGGTCAAAGTGGTACTTTTAAAGGATAACTTGTTAAAGATGGCACCTGTGCCACAGCCACAAAAAGTCGACAAAAATGGTAGAGCTACCTTTGCAGCGTATCGAGTGTATGCACCTAAGGGTGAATACAACATAACATTTCAAGgcatattaaataaatccacTTTAGAGGGACCTTCTGTGAAAATCAATGTTCTCCCAGACTCCACTAAACCTGTGAAACTCTTGGTAGAGTACGACCAAGATGCAGTGTTCCCTGCGGGAGGTTTTTTAACCGTGTTCACAGTGACTGTTCTGTCAGAAGATGGCAATGGAATGAGGAATTTGAATCCAGCTATGATGTCAATGCAGATGTGGAAAGGTCGGACTTCTGGCACACGACCTCCAGAACATgCTGCCACACTCATGTGTAGCAAgccaaaggaaaatgaaaaagaaggcCGGTTTTATTTCAGAGACAAAATAATTCCAGATCGTGTGGGCGAGTACAgcattcagttttcatttacaGTGGACAAAACGAGAATGTTATGGAGTGAACAGtttgtAATAAATGTGGAGCCTAATGATCCAGTGAAATTGATGCCAGATGTCCAGCCGCCAACTCCAGTTGTTTCTAATATCCGTTCCATTGCCCTTCGGATATTAGTTAACAACCTGCGTCTTAAAATCATGGATGAGTATGACAACCCCACTGGTGCAAATCTAGATGGAAAAGTGGTGGTTACCATTAAGAGTCCTAATGAGACTGACATCGAAATCCCTCAATTTCAAGGGAAAGTCAGACAAGTACAGTTTAACCTCTCTAGAGGTTGTGCTGAGATTGTGAATCTCATTCTTGCTGAAAACAGCCCCGGCATCGACGGAACTGAATACATTCTGTTCTTCAATCCAGTTGTTCCTGgctttgtaaaagaaaatgctttgaaaCCATTTGAGCTTCcattcatgttttcaaatgGCCAAGCCCGAGAAGCATCAGTAAAGGAGGTTCATCTCAAAACGGATCTGAGGAATATAGATATCGATGTGTCCCAGCTGACAGCTGTTGAACATATAGAAGTCATGATGAGAGTAAAGGCAGCAGAGCGTGAAAAGATAATGAAAGAGCCTCGCAGAACCTGCACAATCCCCAACACTTCTAAAGGAAACCCAGATGTCTTGGGAAAGATTGCTCACTTGGCCCATGTTGCGGACAATGAAGCTGCAAAGGTGATCTCTTGGCACCTGGCAAGTGATATGGACTGTGTGGTCACACTGACCACTGATGCAGCTCGGCAGATCTTTAAGGACACCCAGGGAAGGCAGCAAGTGCTTCCTCTGGACACCATCTACAGGAAAAACCTTCCAGACTGGAACAAGTCCCTACCTCACATAAGGAATGGAAGGTGTTGCTTTGAACCTTTAGGAAATCCTGTATTTGTTCGGGATCTCCTGATTTTCCCAGAACATCTTCCAAACTGTAAAATAGTCTTTGGCATGCTCCTGGGAGACACCATTCTTCTGGATGACTTGGATGCTGCAAACCACTATAGGAAGGAGGTTGTTAAACTGACACATTGTCCAACATTATTGACCCGGCAAGGGGACCGAATCCGTAGCAATGGGAAGTTTGGAGGCCTTCAAAACAAGGCACCGTCACTGGACAAGTTACGAGGGATGTACTTTGGAGCACCTCTGCCCCCATCATACCATAAACTGACGACACAAATTGATCTCCTTCAGCAATATCGCACGGCGTTTATGAAGCTCAGAGATGTGAAGAGTGATATTGAAACTCACATGCAGTACCTCAAATCACCGGAGATGTTGAAGAAACGAGAAGAGCTCCAGTTGCAGGAGAAACAGCTCCAAGACATTGAAATGAAACTTGCACAGATGTGGTTTCATCTCTCCCTGCACTCTCAAGTCCTGCGACCAGCACTGGCACTGTAACAAGAAAGAGAAAGGTTTaggtcttcttttttttttttttctttcttttttctcctctcaccaaaatggtattttatttgtaatgaaaggTTATTTAAACTTGTGTTATTTAAAGATTTGAGGGCTTTTTTACATTCCTCctctttgatctttaatattctttgacttttttcaacatgtactgtacattttaatacattttgtatctagtgttaaatgtttttgttaagttTCCAGCATTTTAGAGCCGTTTGCTAACTTCGACTTTGTTTCtgattttgaaatggaaaaacaaacttctGTTGAATCCACCATTTAACCAATGGGTAATTGAATTCGCAGTGCTAGCCCTTACAGTTGAGGATACATTTACACACCATAATACACATTATCAGTTTGCACAGCATGATGGAGTGATGCACTTTCTGGGAATACAAGAGAACAACTGTGACTGGAatattgtggaaaaataaatcatcttttgtattatgttttttatgtactgTTATTGTTGGTGACGTTAATGCAATACCTAGATAGAGTATAGCTAaggatttcactttttttttaggGTTTGCTGACCAATTTAGTTTGAGCTCAAATACCATTTCACTTAAAGTTCTCATGAAATACATCTAATTCCATTGCAGAGGACTGCAGAGatcttaaaattaaaacctgaaTTTCATAGGTTTTGGAGTCACAGACAACCAACTTCTGCAGCAATGCTCCCAAACTGtgaacaatgttattttaaaattgtaatctttgtatattttttgtatatccACCTTAAAAGCTGCACTATTCACTATACATTGAATGTATCATCAAAAAAGCTGAGTATTTTATGTGATTTCTAAGGAATCTTGAATCCAGCGTGGGCTTGTATATTACAAGTGTCTTTGTATATGAAGGTTATAATACACTGCAATAGTCATATTCATACagcaattatgttttatgttttttatgttctttgaCCTGCCCAATGGTCTACTGCATCTGAAGGCTTGTAATTTATaaactttgcttttattttattttgttttaattttctttatcttAAAAACAGATCAGGTTAGCTGAAGatgaggtttttgtttgtttaaccaCAAATATTACCTTTAGCGGGCTTTCACACCTACAATTTGAACAAATACCACTAGAAATGCGTGGTCTTGTTTGCTTGAAAGTGATGGTATGTTTGCGACATTGCACAAAATGTAGTGTAAGACCACAGCATTTTCAgtgtatgattattatgaatatagACAATTTCCAGCAATAAACTGCAACTGAGTGTGTTTGGAATAGTGTAATGTGAAACCAGTAGAATTGTACACAAACTAACTATAGTATAAACAAAATTgaattcactttaaaataagtttgaaaGAATTTTCCTGGTTTGAAACGAATAAAACATAAACTGGTTTGTTTGCAAGTGAACTAGGTGTGAAAGTGTCCTTGTTTAAAGAGCAAAGAACATAATAAAACCTACATCTTGAGGTAGATGCACCTATATACTCTGATAGTTTACACTTCTATGTGTAGATTTTGAAGGAAAATAATGCTGTGTAAAAGTAAATATGGTTTTATGTATATCCAAATGGCTGTCAAGTTTTGAATTTggttacaataatacaattgtttgaACAGCAAgaacacagataaataatacaaataaagaccaTGCACCCATGATCAGTAAACAAGTCTACGTTAAATGTGCAGAAAAGTGAAGAGACACAGGGTTTAATATCTACTGTATAAATTAACAGACTCCAAGGGCATGGTGGAG

Function

GO: NA

KEGG:

id description
K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019677 True 7174 mRNA 0.41 45 37091023 37169287

Neighbor

gene id symbol gene type direction distance location
AMCG00019670 tyms coding upstream 889832 36197051 ~ 36201191 (+)
AMCG00019669 NA coding upstream 900227 36187052 ~ 36190796 (+)
AMCG00019660 NA coding upstream 1358765 35716345 ~ 35732258 (+)
AMCG00019653 NA coding upstream 1716740 35351443 ~ 35374283 (+)
AMCG00019651 pfkp coding upstream 1942732 35106126 ~ 35148291 (+)
AMCG00019680 myl12.2,LOC104925296,LOC105894777,LOC107732590,LOC103037289,LOC107746904 coding downstream 196687 37365974 ~ 37371256 (+)
AMCG00019681 NA coding downstream 203092 37372379 ~ 37378679 (+)
AMCG00019689 NA coding downstream 230313 37399600 ~ 37406431 (+)
AMCG00019691 NA coding downstream 240481 37409768 ~ 37419547 (+)
AMCG00019693 NA coding downstream 435226 37604513 ~ 37606380 (+)
G36106 NA non-coding upstream 30379 37060418 ~ 37060644 (+)
G36098 NA non-coding upstream 144525 36946101 ~ 36946498 (+)
G36094 NA non-coding upstream 179044 36911541 ~ 36911979 (+)
G36088 NA non-coding upstream 462953 36627690 ~ 36628070 (+)
G36054 NA non-coding upstream 863674 36226038 ~ 36227349 (+)
G36130 NA non-coding downstream 69602 37238889 ~ 37240494 (+)
G36189 NA non-coding downstream 219041 37388328 ~ 37389962 (+)
G36370 NA non-coding downstream 1686552 38855839 ~ 38857856 (+)
G36454 NA non-coding downstream 1912823 39082110 ~ 39082411 (+)
G36464 LOC103376870 non-coding downstream 2088744 39258031 ~ 39258546 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other upstream 791476 36292346 ~ 36299547 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 1027173 36046477 ~ 36063850 (+)
AMCG00019641 NA other upstream 2239700 34840316 ~ 34851323 (+)
AMCG00019638 LOC107757182 other upstream 2512583 34454209 ~ 34578440 (+)
AMCG00019609 NA other upstream 4698047 32324400 ~ 32392976 (+)
AMCG00019676 NA other downstream 9072 37178359 ~ 37213519 (+)
G36212 NA other downstream 344700 37513987 ~ 37516027 (+)
AMCG00019708 vps41,LOC102790284 other downstream 1409029 38578316 ~ 38632178 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 5387253 42556540 ~ 42572080 (+)
AMCG00019751 NA other downstream 5455443 42624730 ~ 42627105 (+)

Expression


Co-expression Network