AMCG00019679


Basic Information

Item Value
gene id AMCG00019679
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37198256 ~ 37220428 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019679
ATGGGCACCAGTTTTgatgtggtttgtttttggttgtttcaGATTGAGACCATGAACTACGTGGGTCAGCTGGCTGGCCAAGTGTTGGTGACGGTGAAGGAGCTGTACAAAGGCATCAACCAGGCCACCCTGTCCGGCTGCATTGACGTTGTCGTCGTCCAACAGAGAGATGGCTCTTACCAGTGCTCCCCTTTTCATGTGCGTTTTGGAAAGCTGGGGGTCCTGCGCTCCAAGGAGAAAGTGATTGACATAGAGATTAATGGCGAACCTGCTGAGCTTCACATGAAACTGGGTGACAATGGAGAGGCATTCTTCGTACAAGAAacggaaaagaaaaatGAGATTGTTCCAGCTCACCTGGCGACCTCCCCAATCCCAACTGAGGAGCAGATGTTCTGGAACCTAGAGAAGCATTTGGCGAGTTCTGGAATGGAAGACAGGCAGGCTCAGATCTCGGAGAACTCCACCAATAAGAGCATGGACACTGAGAGCTTGGTGCTCAACATTGGCtctgtgaagaagaagaaacgcAGGAGGAAGAAGCACCGAGCAGATCAGAGGAAAGAGGACCAGACCCCAGTGCCTGGAAATGAGGAGATCTTTGAAATGGATCTCAGTTCTGATGAAGAACAAACGCCTCATCATTCAAGGGGATCTTCCTTCACCCCAGCAAAGGATATAGACTACAAACAGCCCTTGATCCTTCACTCCCTTGATAGCTACCCATTCTCTGATGGAGACTGGTCCCCCTCTGACAGCATGGCACTATCACAGCTCTGCTCTCCAAAGAGTGACTCAGAGTTGGTGGTGAAGCCCTCGGAGAACCTCCTAAGGGCTGAATCCCATATGCAGTGGATCTGGGGCGAGTTTCCAGAATCAACTAGGGTcagcaagaaagaaaagtgtGAACCTCTGAAAACCGTCACCATCACCCCGTccgaaaacacacatttccgTGTAATCCTCAGCTCGGACGCCATGGGCGAGGAGGGGGAGCAGCAGCAAGCTGTGGTGGATACTGTCTGTACCATAGTGAAGCCTCAGCCTATAAGCCCTGGCCCTGCAGCTGTGGTCAGTGTGACTGCCTCCCTCCAGGAAAACTCTTCTGGCTCTTCTGCAGCAGTAGTAGAGCAGGTTGGGGACCTGGCAGACATTGTTACTGAAATTAAACCATTCTCAAAGTCGGACTCCCCCTCTAAAAAGAAAGGTGTTCGTAAGAGGAGTCAGCACCAGGGACCGGAAGACATCTACTTAGACGATCTAAATGTATTGGAGCCTGATGTTGTTGCACGTTACTTTCCTAAAAGTGAGTCTGACCCGGGGTCTAAACACTGGCTGGAGTCCGAGACTCGCTCGGGCTCCCAGTCTCCTCAGTCCGTCGGGAGTGCAGCTGCGGACAGTGGGACGGAGTGCCTGTCGGATTCAGCCATCGACCTGCCCGACGTCACGCTGTCCCTCTAAAAGTTCATGGAGCATATTATCACGTACTACGAATTTGCGGAAAATCCCGGAATTATAGACAATCCCAATTTGGTAGTACGAATTGCAAACagaTATTACAACTGGACATTAGCTGCCCCCATGATACTCAGTTTGCAGGCTTTTCAGAAGAACTTGCCAAAGACTACAGAAGAGGCCTGGGTCAAAGAGAAGATGCCAAAGAAATCTGGACGGTGGTGGTTTTGGCGCAAAAGGGCGGACAGCACTGTCAAACAGTCAGAGGCTAAACTGGAGACTCCAGAGTCACAGAGTGGGATTACCCCATCACTCACCCAGGAAAACCCCAGTCAGAGGTCAAAGAGGGAGGACTCCTCCAGTGATGAGGAATCGAAGGAGATTAAAAATGCATCCCTGAAGGATATGGGGCAGCCTGAGAGCCTTGGCCAAGCAAATACTACCTCTTACAAGAAGTCACTCCGACTATCTTCTGATCAGATTgcaaGCTTGAAGTTGAAAGAAGGCCCAAATGACGTTGTGTTCAGTATCACAACTCAATATCAGGGTACATGCCGCTGTGAAGGAACTATCTATCTCTGGAACTGGGACGACAAAGTCATCATTTCTGACATTGATGGAACAATTACAAAGTCGGACGCTCTGGGACAGATTCTTCCGCAGCTTGGTAAAGACTGGACACATCAAGGGATTGCTAAACTGTATCACTCAGTGCATGAGAATGGATACAAGTTTTTGTACTGCTCTGCCCGGGCCATCGGGATGGCAGACATGACTAGAGGATACCTGCACTGGGTCAATGACCGCGGGACCATCCTTCCCAGGGGGCCTCTCATGTTGTCTCCTAGTAGCCTGTTCTCAGCGTTTCATAGAGAGGTTATCGAGAAGAAGCCAGAGAAGTTTAAGATTGAATGTCTTACCGATATCAAGAATTTATTCCATCCTAATAAACAGCCATTTTATGCTGCCTTTGGAAACCGACCAAATGATGTGTTTGCCTATAAGCAAGTTGGTGTCCCTGTCTGCAGAATATTTACAGTAAACCCAAAAGGAGAACTTATACAAGAACAAACCAAAGGAAACAAGTCCTCGTACAGCAGGTTGAGCGAGCTGGTAGAACACGTTTTCCCTCTGTTAAATAAGGAGCAGAGTTCTGCATTTACCTTTCCCGAGTTCAGTTCGTTCTGCTTCTGGAGACAACCCATTGCAGAGATCAATGTTGAGGACCTGGTCTGAATAATGCAGGTGGATATTCCAGCTGGGCGAGGGAGACGTGAGCAGAAAGATATGTGAAGCTGACAGCACTGGGAAGGAAGTTATCATTCTACTGTACATCCTGTAATCAAGAGGGAACCAGCTAAAATGTcccctttttcttatttattggggccgatttatttttgttgttacgATGGCAGTGGAATGaactatttgtatttaatttttgcaGTAATAGATGGCAGGTTGGTGAATTATGGAAGACAAGTTtctgtttctgattttattaACAAGAGGAACTGCTGGGTAATTACAAGGGTGTCATGTGgacatgtatataatttgcaCAAAGTTTGCAACCTGCTGCTGTTcgtaacattttaattttgtataacaAAGGCATCAGAAATGAACCCGTGAGACGGATTTCCAGCAGATCATGAAATTTGAATGTAGAAGGTATTCTATACAATACAGAATCTGCTTTTGCTGATCTATCCAATATTACTtttacacatatacagtacttaCTTTTATACACAGCTATTCCACCATTCTTTATATTCacttgtattaatataatttttttgagTAATTGAATTTGGATTATTCCATGTTTTAGGATTGACTGTGATAATGGCATAATGACATAGGGGTGCCCCCCCctcttttatttcattcacataaaTTCCTGCTTAtcaatgttttgttaataatcagaaatttgtatttgaaggatgtgtatttctgaaatattgtaggcaagttttatattttttcctccatGTCATACATTTCTTTGATTAGGAAATGCAGTTGCCTTTTCTCATGCCTTACTGTACTTTTCAGTAACCAATTCTTTGTATCTTTGCACTTGCAATTGCCAAGCTTACAACTGTCCATTGTGAAGAAAAAGTAGGATATATGTGTAGGAATTATTCAAAGATATGAatactgacagacagacagtataTTAAAGAAAGCAGGCAATATTTAATACTAGAGATGTCATAATGTATAATAGTTCTTTATAATTTTGTAACCGTGAATTTGCTCTCCACTTGCCATGACCAACAGTAttcacaatgtaaaatgtacagacaTTCATCAACATTGCagaagtgtttatttatacttcagctaataatataattacgggcaaacaaaacaaaatgaccttttgacacattttcattgtattttttacacaatataattaatatgtaaagcACAATCACATTGTATATCAATGACTGACAtacacatttattgatttagaaTATTTGTGTGCATAATATGTGGTAGCCATGTTTACAGCATTGCCACCAGTGTGGTTTGTGTAATCGGATCAATTCTGTTGGTGCATctttttcagtatttcatgaaATTCAGAGGTTAAGAACATTTGTTGCATTTCATATTAACAAGTTATGTGATTCTTTCTATGaaagtaatttatttgtgtgaaGAAAACACAcgtcttaaaagaaaaaaaaaaccttggtaTTCATGAATAGATATTAATATACTGTTGCGATAACTGTGATTGTGCAGTTGTAGGCTTCAGCTGAACTTCCCCTCCACCCAATCTTCAATGCCATTGGTTTTATTCCTTAAGTATGTATGGTTTCTTATGATGAAAGTTTCTATTgaatcttttcttttcaatgttAAGCTTACTACTTGATTTTATTGTACCAgttcaaatcaatttaaatacatattaacagTGTGAATATGTATATGGACaatggtgttaaaaaaaaaaaagtttacaaatatccatattaataaatcacaaattttaaaacaaatcatagtattattttcattttgcatgatAGTGAAGATGACGATGTTATTATTTGATGGCATATTTGCAAGGAAGAAGTCTCttctgacaacaacaaaaaagaagtGGCACGATTTTGTCAAACTGCCGAATTTCAATGACACCGGGGACCATTTTTTATGGTCCGTTGAAAAATCAATTGAGCTCTGTATACATTATGAGTATTATGTTTGATGCATAAAGTGTTAAGTGCATCATACCCTCTAAGAAATACAGAGATGGAGTTCAGTTTTGGTCAcaccaagttcagaaatcaatgttaagtggtctcttttccagagctgtatatagtaGAAACATAAATACCACTGGCAGAATTAATGGTGAAATTAATAGTGGGTAGTGCTTCCCTTTTGCTCTGTTCAAGGCAGTACATTTGCTTACACATTAGTTCCTTATTTTGAAAAGATCAGCAGTTTTAGACAGCAGGCAGCCCATTCTTGGCAGCAGAATCTGTATGCAAGTTCCAAATCCTGGATGCCTTATTGGAGCAATTATGCCAGGAACAGCAGCAGCCTGGCCACACAAGCTCAGTGGCCTTCATGTCTAATAATGTGCCAAGCTGTGGAAGAGGCATAATGTCCAGTCTTTTTATCTTTGTATTGCATGGACAATGTGAGCTGTAGCTCCCTCTtccaaatacatacaattatacaacCCCCTGTGCCATGCAGTGCAGTGATTGTATACAGGCCGGTGCAGTGTTGACAACTGATGCAATTGTGCAGTTTTAGTCCATCTCAGGTCAGTAATGGAGTAAGTGTTTGAAATTGCAGCTAAATCAAGAACAAATGGATAGTTAACCATAACCAGAAAATTCAACCACATCAGTAAAAACATCCATAACAGCTGAACACATGGCCTTCAAATGTATACCGATCCTCGACTGTGCACCAACTTGCTCTGGTTTTCATCACTGTGGTCAATAAACTGTACTGGTACATGGAAGCCTATTGGGagtcaaatatattatttagcTTTATGCAAGGAGCTGGTTCCCAGCCTGGGACTATGTAACAAATAGTTTTAAAACTGGAGCAGTAAAAGCCAATTCAGCTTGTGAAAAAGTGGTCAAGTATAAGTCTGGTGACAAATAAAGGAGAATGGTAAGAATTGTCTGATGACACCAAGCGTTAATGACAACTGTCAATTGTTTGGAAAGTTGACCTTTTGCCCTCTCCACTTCTGATAGATCAGCGGAaggaatacatttcaatgtttgCAATGAAGCTCTGCTGCCATCTAGAGGAAGCTCGTTTAGATTAGTCAAGGAGCAGAGCAGACTTGGCTTTAAACATAAGATTTCAGGAAGGCAAGTTGACACACATACTGCCCTCATGGTCATCAAGAACTTAATTTAACCCCCAAACATCTCCTCCAGCACTGTCGAACTGAATGCCTAGCTGggaattcagatttttttgcaACTCAAGAGGGAATGATATCCTGAGCTGCCAAGTCAAAGGAACGCACTCTTAGTTTCCTTGGGCTGTTTCTTGTTCTATTTCGTTTCTTACCTCACATGAAAATGGAGCATGTGATCTGAGGTTACAATTTAAAGTGATGGCTGTAACGTTATAAGGAACTCCAG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019679 True 6116 mRNA 0.42 19 37198256 37220428

Neighbor

gene id symbol gene type direction distance location
AMCG00019678 NA coding downstream 108293 37072418 ~ 37089963 (-)
AMCG00019675 NA coding downstream 455874 36715937 ~ 36742382 (-)
AMCG00019674 NA coding downstream 482520 36645367 ~ 36715736 (-)
AMCG00019672 NA coding downstream 957875 36217304 ~ 36240381 (-)
AMCG00019673 enosf1 coding downstream 981883 36196898 ~ 36216373 (-)
AMCG00019682 NA coding upstream 18461 37238889 ~ 37309104 (-)
AMCG00019685 LOC106593846 coding upstream 158294 37378722 ~ 37384501 (-)
AMCG00019687 chmp5,LOC106590149,LOC106578693 coding upstream 170878 37391306 ~ 37398627 (-)
AMCG00019683 NA coding upstream 200988 37421416 ~ 37425118 (-)
AMCG00019686 NA coding upstream 237665 37458093 ~ 37489142 (-)
G36160 NA non-coding downstream 12100 37167433 ~ 37186156 (-)
G36097 NA non-coding downstream 276450 36921583 ~ 36921806 (-)
G36095 NA non-coding downstream 286277 36911626 ~ 36911979 (-)
G36093 NA non-coding downstream 438905 36759030 ~ 36759351 (-)
G36082 NA non-coding downstream 630992 36566929 ~ 36567264 (-)
G36172 NA non-coding upstream 105370 37325798 ~ 37326994 (-)
G36184 NA non-coding upstream 148678 37369106 ~ 37372128 (-)
G36267 NA non-coding upstream 517847 37738275 ~ 37740601 (-)
G36284 NA non-coding upstream 753025 37973453 ~ 37973683 (-)
G36312 NA non-coding upstream 898292 38118720 ~ 38118934 (-)
AMCG00019665 NA other downstream 1216720 35934796 ~ 35981536 (-)
G35867 NA other downstream 2142812 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 2675986 34510733 ~ 34522270 (-)
G35476 LOC107575789 other downstream 4964858 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 5770673 31422029 ~ 31427583 (-)
AMCG00019698 NA other upstream 669016 37889444 ~ 38110224 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 2196459 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 2749747 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 4850634 42071062 ~ 42078932 (-)
G36817 NA other upstream 5323688 42544116 ~ 42544524 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032513 zgc:123305 coding NC_007117.7 CM002890.2 1567446 ~ 1591002 (-)