AMCG00019687 (chmp5,LOC106590149,LOC106578693)


Basic Information

Item Value
gene id AMCG00019687
gene name chmp5,LOC106590149,LOC106578693
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37391306 ~ 37398627 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019687
gttttttttgtattagtttttagTCCTATCGAATTTatatcctgtttgtttgtttgtttcctgtaaaAATGAATCGGATTTTCGGTCGCGGTAAACCTAAAGGACCTCCTCCTAATCTCACAGACTGCATTGGCAACGTAGATTCAAGGACCGAGTCTATCGATAAGAAGATTGCCAGACTAGATGTCGAGCTTGTGAAATACAAGGATCAAATGAAGAAGATGAGAGATGGCCCTTCAAAGaatatGGTGAAACAAAAGGCTATGAGAGTGCTGAAGCAGAAAAGAATGTATGAAAGCCAGAGAGACAATTTGATGCAGCAGTCTTTTAACATGGAGCAGGCAAACTACACAATCCAGTCTCTGAAGGACACAAAAACAACTGTGGATGCCATGAAAATTGGAGCCAAGGAAATGAAAAAGGCTTATAAGCAAGTGAAGATTGATCAGATTGAGGACTTGCAGGACCAGCTGGAAGACATGATGGAGGATGCCAATGAGGTGCAAGAGGCGCTGAGCCGCAGCTACGGGACACCAGAGATCGACGAGGATGATCTGGAAGCAGAACTGAACGCTCTGGGTGATGAGCTACTGTTAGACGATGACTCCTCGTACTTGGATGAAGCTGCATCTGTACCTTCTGTGCCTGAAGGGGTGCCCAGTGACATCAAAACCAACAAGGATGGTGTTTTGGTGGATGAATTTGGCCTGCCACAGATCCCTGCTACATAGAAACAGACAAGAACAACCCAGGAGTATGCTTTCATGTGTAAAAtaccatttatatataaaactgacAGTTTGGCTTATAAACACATCCATAACATCACACTTCAGAGGCAGATATGATGAGAAGATTAAGACATCTTAGCTTCCTCCATACATTACTGTGGTTTTATAACCTattccttttttcccttctcaaATTCTTTTCATAGTGATCTATGATCTATAGTGAGCATAAATTGCTGTCTGAATGATTGGTTTGAAGCTCTTGATGACTGTTCTTgtatatttaagtttttcattttaatctttaGAGTTTCTTGGTAAATGGCTGCTTTTGTTCTGTAAGATAATGTAACCCCaccttaaaatac

Function

symbol description
chmp5 Enables cadherin binding activity. Involved in several processes, including cellular response to muramyl dipeptide; midbody abscission; and regulation of cell cycle process. Located in cytosol.

NR:

description
PREDICTED: charged multivesicular body protein 5

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019687 True 1099 mRNA 0.40 8 37391306 37398627

Neighbor

gene id symbol gene type direction distance location
AMCG00019685 LOC106593846 coding downstream 6805 37378722 ~ 37384501 (-)
AMCG00019682 NA coding downstream 82202 37238889 ~ 37309104 (-)
AMCG00019679 NA coding downstream 170878 37198256 ~ 37220428 (-)
AMCG00019678 NA coding downstream 301343 37072418 ~ 37089963 (-)
AMCG00019675 NA coding downstream 648924 36715937 ~ 36742382 (-)
AMCG00019683 NA coding upstream 22789 37421416 ~ 37425118 (-)
AMCG00019686 NA coding upstream 59466 37458093 ~ 37489142 (-)
AMCG00019688 NA coding upstream 92609 37491236 ~ 37492869 (-)
AMCG00019684 LOC107742139 coding upstream 166643 37565270 ~ 37590061 (-)
AMCG00019692 si:dkey-37o8.1,LOC108434235,LOC107681461,LOC108256503,LOC105019383 coding upstream 342882 37741509 ~ 37745656 (-)
G36184 NA non-coding downstream 19178 37369106 ~ 37372128 (-)
G36172 NA non-coding downstream 64312 37325798 ~ 37326994 (-)
G36160 NA non-coding downstream 205150 37167433 ~ 37186156 (-)
G36097 NA non-coding downstream 469500 36921583 ~ 36921806 (-)
G36095 NA non-coding downstream 479327 36911626 ~ 36911979 (-)
G36267 NA non-coding upstream 339648 37738275 ~ 37740601 (-)
G36284 NA non-coding upstream 574826 37973453 ~ 37973683 (-)
G36312 NA non-coding upstream 720093 38118720 ~ 38118934 (-)
G36349 NA non-coding upstream 1055397 38454024 ~ 38454309 (-)
G36386 vps41 non-coding upstream 1220214 38618841 ~ 38619657 (-)
AMCG00019665 NA other downstream 1409770 35934796 ~ 35981536 (-)
G35867 NA other downstream 2335862 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 2869036 34510733 ~ 34522270 (-)
G35476 LOC107575789 other downstream 5157908 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 5963723 31422029 ~ 31427583 (-)
AMCG00019698 NA other upstream 490817 37889444 ~ 38110224 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 2018260 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 2571548 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 4672435 42071062 ~ 42078932 (-)
G36817 NA other upstream 5145489 42544116 ~ 42544524 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location