AMCG00019698


Basic Information

Item Value
gene id AMCG00019698
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37889444 ~ 38110224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019698
GCAATTACTCCGCGTCGGTCAAGCAGGTCTATGGCACCGTATTCAACAGTTGCTCCGGCGTTTGTTGCGCACCGCACTCATTTTGCGCACATGGAAGTACGCCGACATGCACGAAACGAGCGATTGTAGGACGTAACGGGACGTATACAGACCTGCTCCCGTCGAGGCGTGCAGCGCGCATAAACCCAAAGCAGCGCAACGAAGCGCAGCCGTGCAGCCCCGGCTCTGATCTCACCCGCGCCGTGACGTCACGCGCGGTCCGTGAGGTAGCAGAGCGTTCCGCGCAGCGCGTGCTCCGAGCACATGGAAAGAGGTCGCGCCGAGCCGAGCCGCGCGCGGGGCTGCGTTCATGTCACTTTCTGCGGCTTTTCCACCGCTTACCTGGGATATAAACGCCGCAGCGAGATGTGGGACAAGTCGAAGAAAGGaaTGTCACAAAGCATTCTGAAGGGCATGCAGCACTTGACTGCCTATAAATCTGTTTGGCGGGTGATCTACCGCCCATACGCCAGCTGCTCTCCTGGCACATCTAGCGTTGCTGTTGCTATGGAGACACCGAGGCAGACGAGTGACATGCAGGCCCCTGGCTCAGTGCCAAGTTGCCATGGAGAGGACATGGTGGGCCAAGATCCCAATGGTAGTCAAAAACAGattCCCCAACTGCTGCCGAGAATGCCCCTGGACTTCAACTCTGCGCCACTGTCATCGGGGGAGATGTCCAACCTCAGAAGAGAACAGCTGCTGTCAGGAGGGGATCTTATTATAAGATCCAGGAAGAGCCTCTGTGCCAGTAGGAGGTCAGATCAGCAACTCAGCCTCCAGACCACCGCTGCAGCCCTGAGTAACGACACAGCAGACAGACAACCGGAGAACAGCCAAGAAGAcagacaATTCCAAGGCTGTGGTTTACAGCAAGCTTCGGACAGAGttaaataa
>TU45372
CGCGTGCTCCGAGCACATGGAAAGAGGTCGCGCCGAGCCGAGCCGCGCGCGGGGCTGCGTTCATGTCACTTTCTGCGGCTTTTCCACCGCTTACCTGGGATATAAACGCCGCAGCGAGATGTGGGACAAGTCGAAGAAAGGAAGATGAAGAAGGTGGGGAGCAGTGCTTTTCAAGAATGAGGGATTTACAAAACCACCAAAGGAACAGCTGGAGTATGCTGAGCAGTCTGAAGGCAGCTTTGAAACAACTCGGATGGAAAACTATAAGAagaatttgttttcttcagtgaaCTGCAGTGGTGGGTGTAAATGTCTTTACCCTGCATTGATTTGAGAGTATTTATCTCTCTCAACACAGCATCATGGAGATACCACTAATATATTTCCTTTGGAGGAAGCGCATGTTATTATAGTCCCTTGCCTGAAGAATCACTACAGGTTTACAACTCTCAGCCCTTTTGTTGCAGGTACGGATAGCTTCTTATTGTATCCTGGATCTATACTGTCATTTGCAATGTTGCCAGCACTTCTTTAGTTACAGCCTGTTGTAATTCACGCACCAAAAGTGTGACTTTCTCTCATTCTGTAGTTTTACTGTGGTATTTCAGAGCTGATTTGAACATGATCCGTACCATTCTCACTTATTGCCTATACCTTTAATCAAATTTGATATGTATCTTGATTTTATATGTAGACAAACTTACACTATacaattgataaataagtatagtttaattaacaatatctactaaagaaacaaatgaattaattatattgtgtgaATACAGTGTGaatacaactatatatatatatatatatatacaaaatgggGCTGTATTCTCAAGCATTTGAATGGGGCATTTGAGAAAAATGTATGACCTTGTCTAATGTTTTCTTCAACTATTGATTCTGAAAAAGTAGAATTTGGGTATTCAGAGTAATTCTAATAAACTTctcctgttttgtttataatttctgTTATTATAAACTCGAATAAACA
>TU45373
CGCGTGCTCCGAGCACATGGAAAGAGGTCGCGCCGAGCCGAGCCGCGCGCGGGGCTGCGTTCATGTCACTTTCTGCGGCTTTTCCACCGCTTACCTGGGATATAAACGCCGCAGCGAGATGTGGGACAAGTCGAAGAAAGGAAGATGAAGAAGGTGGGGAGCAGTGCTTTTCAAGAATGAGGGATTTACAAAACCACCAAAGGAACAGCTGGAGTATGCTGAGCAGTCTGAAGGCAGCTTTGAAACAACTCGGATGGAAAACTATAAGAagaatttgttttcttcagtgaaCTGCAGTGGTGGGTGTAAATGTCTTTACCCTGCATTGATTTGAGAGTATTTATCTCTCTCAACACAGCATCATGGAGATACCACTAATATATTTCCTTTGGAGGAAGCGCATGTTATTATAGTCCCTTGCCTGAAGAATCACTACAGGTTTACAACTCTCAGCCCTTTTGTTGCAGGAAAATCATGAGACGATGACCTTTCAACTCAGCCAGCCCTGTGGAATGTCTGCTATACAGGATTGTCTGAAGCTGAGAAGTTATTTGGGGGAAATGAGTCCGACCGAGGAAATGGACCAAGGTGTAGCAACAAGCTCCACAGGAAAATGGACTGTCCTATAAACCTGTGTCAACTTCCCAGCAGGAACATTTGCATCTTAATTCCTTGTCAATAAGCTGTATTATCCAGATGAATTCCTAAATGCGGCTCCACCATGGCAGGGCTCCGAAACCATAGCTTTAATGCTAAAGGGATTACGGAAAAGCAGTCAAATCCAGTTTTGTGAAGAGAACATGGCAGCAGGTCTATCTGAAAGCCGAAGAGGATGTTTTCCTGGATGGGAACTGGGACTTGCGTTTCAAGAAGAATGAGTAGTGCCCACAAGCAACTCTGctaaccccctcccccccgctTGATAAGAAGCTGTATTGATGCATGACACATGACACCGGAGCCAGGGATTGCCAGAGTTGTGATGAATTGCCCTTTCTTGCCTCTCCAGCTGTTTCCCACTGTCCTGTGCCATCGGCCTCAGGCTCCCACCACTGAGAACTGGAGTCTTTATTTACAACTACCTTTTCTTTTATGCCTCTTTATGCCTCATTTAAAGACACTAGATTCAGTTCAACTAAAATATGATTATTCTTCAGATATGACATTCATTCTCTACACTAATCCTGTTGACTTTCATTTCCCCATCCAGCCAGTTAGATTGGCTTTTGTTGTCAAAGCTTTTAACATCTAGGATGTGTTTGCATATGTACGTTGACAtataatacatgtgtttttaaagattacatttatattttgaactATGGTTTTGCTGCTGTCTAACTGTTGTGGATATTGTAGTCCATACACGATGACTCATCTG
>TU45374
CGCGTGCTCCGAGCACATGGAAAGAGGTCGCGCCGAGCCGAGCCGCGCGCGGGGCTGCGTTCATGTCACTTTCTGCGGCTTTTCCACCGCTTACCTGGGATATAAACGCCGCAGCGAGATGTGGGACAAGTCGAAGAAAGGATGAAGAAGGTGGGGAGCAGTGCTTTTCAAGAATGAGGGATTTACAAAACCACCAAAGGAACAGCTGGAGTATGCTGAGCAGTCTGAAGGCAGCTTTGAAACAACTCGGATGGAAAACTATAAGAagaatttgttttcttcagtgaaCTGCAGTGGTGGGTGTAAATGTCTTTACCCTGCATTGATTTGAGAGTATTTATCTCTCTCAACACAGCATCATGGAGATACCACTAATATATTTCCTTTGGAGGAAGCGCATGTTATTATAGTCCCTTGCCTGAAGAATCACTACAGGTTTACAACTCTCAGCCCTTTTGTTGCAGGAAAATCATGAGACGATGACCTTTCAACTCAGCCAGCCCTGTGGAATGTCTGCTATACAGGATTGTCTGAAGCTGAGAAGTTATTTGGGGGAAATGAGTCCGACCGAGGAAATGGACCAAGGTGTAGCAACAAGCTCCACAGGAAAATGGACTGTCCTATAAACCTGTGTCAACTTCCCAGCAGGAACATTTGCATCTTAATTCCTTGTCAATAAGCTGTATTATCCAGATGAATTCCTAAGTAAGTACTTGTCCAGCTGAACAGACTACAGTTGATTTAACCCTTTGTTTCTATCTACTGTCTTTTATCTAAACCTTGTATTTGATGGCGTCCTATCATATGTACAATCCTTCTGCTACCATATCCAtctattacaatatttatgttataGTCTCATGGTAGCAGTCTTgttaaaacattgattttatatatgtattaatgcCTCTGTACCTTGATAATTATATAGAGGTCACCAATTCATGTTATTTCTG
>TU45375
GTCAAGCAGGTCTATGGCACCGTATTCAACAGTTGCTCCGGCGTTTGTTGCGCACCGCACTCATTTTGCGCACATGGAAGTACGCCGACATGCACGAAACGAGCGATTGTAGGACGTAACGGGACGTATACAGACCTGCTCCCGTCGAGGCGTGCAGCGCGCATAAACCCAAAGCAGCGCAACGAAGCGCAGCCGTGCAGCCCCGGCTCTGATCTCACCCGCGCCGTGACGTCACGCGCGGTCCGTGAGGTAGCAGAGCGTTCCGCGCAGCGCGTGCTCCGAGCACATGGAAAGAGGTCGCGCCGAGCCGAGCCGCGCGCGGGGCTGCGTTCATGTCACTTTCTGCGGCTTTTCCACCGCTTACCTGGGATATAAACGCCGCAGCGAGATGTGGGACAAGTCGAAGAAAGGAAGATGAAGAAGGTGGGGAGCAGTGCTTTTCAAGAATGAGGGATTTACAAAACCACCAAAGGAACAGCTGGAGTATGCTGAGCAGTCTGAAGGCAGCTTTGAAACAACTCGGATGGAAAACTATAAGAagaatttgttttcttcagtgaaCTGCAGTGGAAAATCATGAGACGATGACCTTTCAACTCAGCCAGCCCTGTGGAATGTCTGCTATACAGGATTGTCTGAAGCTGAGAAGTTATTTGGGGGAAATGAGTCCGACCGAGGAAATGGACCAAGGTGTAGCAACAAGCTCCACAGGAAAATGGACTGTCCTATAAACCTGTGTCAACTTCCCAGCAGGAACATTTGCATCTTAATTCCTTGTCAATAAGCTGTATTATCCAGATGAATTCCTAAATGCGGCTCCACCATGGCAGGGCTCCGAAACCATAGCTTTAATGCTAAAGGGATTACGGAAAAGCAGTCAAATCCAGTTTTGTGAAGAGAACATGGCAGCAGGTCTATCTGAAAGCCGAAGAGGATGTTTTCCTGGATGGGAACTGGGACTTGCGTTTCAAGAAGAATGAGTAGTGCCCACAAGCAACTCTGctaaccccctcccccccgctTGATAAGAAGCTGTATTGATGCATGACACATGACACCGGAGCCAGGGATTGCCAGAGTTGTGATGAATTGCCCTTTCTTGCCTCTCCAGCTGTTTCCCACTGTCCTGTGCCATCGGCCTCAGGCTCCCACCACTGAGAACTGGAGTCTTTATTTACAACTACCTTTTCTTTTATGCCTCTTTATGCCTCATTTAAAGACACTAGATTCAGTTCAACTAAAATATGATTATTCTTCAGATATGACATTCATTCTCTACACTAATCCTGTTGACTTTCATTTCCCCATCCAGCCAGTTAGATTGGCTTTTGTTGTCAAAGCTTTTAACATCTAGGATGTGTTTGCATATGTACGTTGACAtataatacatgtgtttttaaagattacatttatattttgaactATGGTTTTGCTGCTGTCTAACTGTTGTGGATATTGTAGTCCATACACGATGACTCATCTG
>TU45377
CGCGTGCTCCGAGCACATGGAAAGAGGTCGCGCCGAGCCGAGCCGCGCGCGGGGCTGCGTTCATGTCACTTTCTGCGGCTTTTCCACCGCTTACCTGGGATATAAACGCCGCAGCGAGATGTGGGACAAGTCGAAGAAAGGATGAAGAAGGTGGGGAGCAGTGCTTTTCAAGAATGAGGGATTTACAAAACCACCAAAGGAACAGCTGGAGTATGCTGAGCAGTCTGAAGGCAGCTTTGAAACAACTCGGATGGAAAACTATAAGAagaatttgttttcttcagtgaaCTGCAGTGGTGGGTGTAAATGTCTTTACCCTGCATTGATTTGAGAGTATTTATCTCTCTCAACACAGCATCATGGAGATACCACTAATATATTTCCTTTGGAGGAAGCGCATGTTATTATAGTCCCTTGCCTGAAGAATCACTACAGGTTTACAACTCTCAGCCCTTTTGTTGCAGGTACGGATAGCTTCTTATTGTATCCTGGATCTATACTGTCATTTGCAATGTTGCCAGCACTTCTTTAGTTACAGCCTGTTGTAATTCACGCACCAAAAGTGTGACTTTCTCTCATTCTGTAGTTTTACTGTGGTATTTCAGAGCTGATTTGAACATGATCCGTACCATTCTCACTTATTGCCTATACCTTTAATCAAATTTGATATGTATCTTGATTTTATATGTAGACAAACTTACACTATacaattgataaataagtatagtttaattaacaatatctactaaagaaacaaatgaattaattatattgtgtgaATACAGTGTGaatacaactatatatatatatatatatatacaaaatgggGCTGTATTCTCAAGCATTTGAATGGGGCATTTGAGAAAAATGTATGACCTTGTCTAATGTTTTCTTCAACTATTGATTCTGAAAAAGTAGAATTTGGGTATTCAGAGTAATTCTAATAAACTTctcctgttttgtttataatttctgTTATTATAAACTCGAATAAACATCTTAAATATgtacactgatacacacatttCTTAATTCATACATCATTCTCATTGTCAGAAATCTCATCActtttaattatagtttaataTCTTCAGTATCATTCTTCTGATTGCCATAATggattctgaaatgtattttgatctTTTTAGCATTTTGCAAATTTCTGAACTGTTATGTAGATGATTCAGGATCAATATGGGTTGGCCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019698 False 936 mRNA 0.57 8 37889444 38110224
TU45372 False 1000 lncRNA 0.38 2 38100765 38109937
TU45373 False 1381 lncRNA 0.44 7 37987243 38109937
TU45374 False 956 lncRNA 0.43 4 38051213 38109937
TU45375 True 1483 lncRNA 0.48 7 37987243 38110207
TU45377 False 1209 lncRNA 0.36 2 38100553 38109937

Neighbor

gene id symbol gene type direction distance location
AMCG00019692 si:dkey-37o8.1,LOC108434235,LOC107681461,LOC108256503,LOC105019383 coding downstream 143788 37741509 ~ 37745656 (-)
AMCG00019684 LOC107742139 coding downstream 299383 37565270 ~ 37590061 (-)
AMCG00019688 NA coding downstream 396575 37491236 ~ 37492869 (-)
AMCG00019686 NA coding downstream 400302 37458093 ~ 37489142 (-)
AMCG00019683 NA coding downstream 464326 37421416 ~ 37425118 (-)
AMCG00019701 NA coding upstream 97658 38207882 ~ 38222789 (-)
AMCG00019703 NA coding upstream 152668 38262892 ~ 38263670 (-)
AMCG00019702 NA coding upstream 156130 38266354 ~ 38269323 (-)
AMCG00019704 LOC106590158 coding upstream 232748 38342972 ~ 38350616 (-)
AMCG00019705 vps41 coding upstream 516050 38626274 ~ 38626804 (-)
G36267 NA non-coding downstream 148843 37738275 ~ 37740601 (-)
G36184 NA non-coding downstream 517316 37369106 ~ 37372128 (-)
G36172 NA non-coding downstream 562450 37325798 ~ 37326994 (-)
G36160 NA non-coding downstream 703288 37167433 ~ 37186156 (-)
G36097 NA non-coding downstream 967638 36921583 ~ 36921806 (-)
G36312 NA non-coding upstream 8496 38118720 ~ 38118934 (-)
G36349 NA non-coding upstream 343800 38454024 ~ 38454309 (-)
G36386 vps41 non-coding upstream 508617 38618841 ~ 38619657 (-)
G36456 NA non-coding upstream 968279 39078503 ~ 39081979 (-)
G36470 NA non-coding upstream 1135568 39245792 ~ 39293373 (-)
AMCG00019665 NA other downstream 1907908 35934796 ~ 35981536 (-)
G35867 NA other downstream 2834000 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 3367174 34510733 ~ 34522270 (-)
G35476 LOC107575789 other downstream 5656046 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 6461861 31422029 ~ 31427583 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 1306663 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 1859951 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 3960838 42071062 ~ 42078932 (-)
G36817 NA other upstream 4433892 42544116 ~ 42544524 (-)
G36862 NA other upstream 4534100 42644324 ~ 42656393 (-)

Expression


Co-expression Network