AMCG00019710


Basic Information

Item Value
gene id AMCG00019710
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38825792 ~ 38832473 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019710
TCTGAAAGGGCAGCTAACCAGTGAAGGTGTGGTGGGTGGACGGGAGACACATTTCACTTTGTAGCCTAAAAGGACGCCAAATATCAGTACATTGACCAAAACGGTTTTTCATAAAATACTGTAGCACTTTAAGACTGGTGACTGTAGTTATTGAAACAGAGTAAAGCACTGTGGGGAACGTCAAGATATTTGGAGCCGGTACTAAATTGATTGTTGATAACACAATACCCACCAAACCCATAGTGGTACGATATCCGCCTGTCTCTTTAAGTGGTGAGAAAAAAGCCCTGCTCTGCCTGGCTAAGGGAATGTTCCCACCTATTGTGCAATTTAAATGGAGCAATGAGGGTGAAGAGCTTCTGCAGACGGATAAGGATTCCACCAGCAGTTTACTGATCATTACCGACAAACAATATAGTGACCACAACTATAAATGTATAGTCAAACATGAAACAGGGGATTCTCAAGCTTTAGAGTTTAAGGTAACTGATGAAGacattttttatttgaatgtggcCCAAGTGACCTACACTGCCCTGATTGTGAAAAGTGTGGCATACTGTGGAATAGTGTCCTTCCTCCTATACCAGATGAAGTCCACTCCTGGTTCTGCCATGAAGATGATCTAATGACACAGGAAGTTCAAACTGCAAAAGGATGACAACATCACTCTTGCAGTTTATCATATTGCTCTTTGCTTAGTTAGAAATTGGTTTTATTGTAAGAcagttttgacattttaatctttttgtattgcttttgatagcatgtattgtattgtatagactgtttcttttcctttgacCTTACATTACagttatatacacatatatatttaaaccttTACTATATAATACAGgttgtttcatttcaaagttAACAGGGTAATGTAAATAGTATTTACCATAGTTCAATTATTTATACTCTGCAGCatgtttaatctataCTTGGTGATTCAGAGATGTTAATGTACTGCATCAAAATTAATTGTGCAAGATATTTCAATTGCta

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019710 True 1011 mRNA 0.37 4 38825792 38832473

Neighbor

gene id symbol gene type direction distance location
AMCG00019716 NA coding upstream 54000 38763195 ~ 38771792 (+)
AMCG00019709 NA coding upstream 92055 38662907 ~ 38733737 (+)
AMCG00019699 NA coding upstream 592084 38232175 ~ 38233708 (+)
AMCG00019700 ankh,ankhb,LOC107657429,LOC107713990,LOC108437249,LOC107701025 coding upstream 620133 38162404 ~ 38205659 (+)
AMCG00019697 fam49b,fam49bb,LOC107748306,LOC107691432 coding upstream 1017575 37793089 ~ 37808217 (+)
AMCG00019717 NA coding downstream 6291 38838764 ~ 38840380 (+)
AMCG00019718 NA coding downstream 201108 39033581 ~ 39064073 (+)
AMCG00019723 NA coding downstream 484782 39317255 ~ 39328841 (+)
AMCG00019722 LOC105017907,LOC106568825 coding downstream 549674 39382147 ~ 39414885 (+)
AMCG00019728 gtpbp4,LOC107721733 coding downstream 979604 39812077 ~ 39830831 (+)
G36189 NA non-coding upstream 1435830 37388328 ~ 37389962 (+)
G36130 NA non-coding upstream 1585298 37238889 ~ 37240494 (+)
G36106 NA non-coding upstream 1765148 37060418 ~ 37060644 (+)
G36098 NA non-coding upstream 1879294 36946101 ~ 36946498 (+)
G36094 NA non-coding upstream 1913813 36911541 ~ 36911979 (+)
G36370 NA non-coding downstream 23366 38855839 ~ 38857856 (+)
G36454 NA non-coding downstream 249637 39082110 ~ 39082411 (+)
G36464 LOC103376870 non-coding downstream 425558 39258031 ~ 39258546 (+)
G36497 NA non-coding downstream 560019 39392492 ~ 39430557 (+)
G36516 NA non-coding downstream 874593 39707066 ~ 39709540 (+)
AMCG00019708 vps41,LOC102790284 other upstream 193614 38578316 ~ 38632178 (+)
G36212 NA other upstream 1309765 37513987 ~ 37516027 (+)
AMCG00019676 NA other upstream 1612273 37178359 ~ 37213519 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other upstream 2526245 36292346 ~ 36299547 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 2761942 36046477 ~ 36063850 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 3724067 42556540 ~ 42572080 (+)
AMCG00019751 NA other downstream 3792257 42624730 ~ 42627105 (+)
AMCG00019755 NA other downstream 4128183 42960656 ~ 42962658 (+)
AMCG00019758 NA other downstream 4429421 43261894 ~ 43271192 (+)
G36954 NA other downstream 4497819 43330292 ~ 43333313 (+)

Expression


Co-expression Network