AMCG00019711 (epdr1,LOC107664036,LOC107558964)


Basic Information

Item Value
gene id AMCG00019711
gene name epdr1,LOC107664036,LOC107558964
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38885006 ~ 38893548 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019711
GAGATCCCCTGCGCGCCTGCGCGCCTGACCCAGCGCTCACACAGGCTTGAGAAGCTGCCGAGTCATTGTCTCAGATACAGCTCGCCGCTATTGGCCTTCGTATGTGCACATATCTGTAAGTCTATttcatacaatacaattatgcaCGTATTTATGCACATCGCCGTGCTGTTGCTGTCTTCAGCGGCTCCCTCGCTGGGCCGCTCCCGGGCAGACGAGCCTCCTCAGCCGTGCCAGGCGCCCCTGCAGTGGGAGGGCAGGTCGGTGCGGTACGAGCACAGCACGGGCAGGAACACCCGGGCCATCGTGTCCTATGATGGGCAGAATCAACGGATCAGGGttttggaggagaagaaaggaCACATTCCCTGTAAGAGGTTCTTTGAATATATCTACATTTACCAGAGTGCAGTGCTGTTCCAGATTGAGCAGGTCACCAAGCAGTGCTCCAAGATAGCTCTCACAGAGGCCTGGGACCCCTATGATATTCCAGACAATTCCACTTATGAGGACCAGTACTTCATTGGGGGGCCGGGGGacacaatacaggtgcaagagtGGTCTGACAGAAAGCCTGCCCGTAAAAATGAAGCTTGGGTTGGAGTTTACACGGTCAAGGACTGTTACCCGGTgcaggaaacatacacaaagaACTACAGTGTGACAACCTCCACCCGTTTCTTTGATCTGCAGCTTGGAATCAGTGACCCAGCAGTGTTCACTCCACCCAGCACCTGCCAGTCTGCGCGGGCAGAGAGGATGAGCCAGGACTGCTGATTCCTTAGGACCACACACTTCCCCTGCCATGACGGGCAGCTGTGTAGCGGTTAGGACTCTGGCCACTGGAGCagggggttgtgggttcagtctcAGGtgggtgggggacactgctgttgtacccttgagtaaggtactgtacctagattgcacTAGTAAAACACAGTGatatagtaataaaataaaaactaaaaaaactataGTCAAGCATGGCTGATGCTTGTGTGATCTAGAACTGGAAGAGCAAAGGTTAATGAAaggtattagtagtagtagtagtttttaCCTTCCTCGATATGAAAGGCAATATGGCATCTGCTTTTTTGCCTCAGAGCTCTAAGTGTCTTTATTGAACCAATTGTTTGAGAACAATTATTTAGTGTAaccatttttgttattgtcattttgtaaaactataataactacaataattgacattcatatattttgacACTATGGTAATATTGTATGCAAGGTGATAGACATTTCAATATGTTAATATGGAATTTGATGTCTTGAAAAAATATGGATTTGTAGGTGATCATTCTTAGAGAGTATACAAATGCTGCATTACCAATATTATTAATACCTAGGGGTACTCACCGTGATcacaaaatatagatataataatggaaaaagtAAAGAgctatttgaagaaaaaataacttgaaGAAAAGGAGTAGTGAAATTAACAATTTGTATGAACAATCAAAATGAAACAGATCAAATTTGTATTGAAGAATGATACAAGTTAGTAAAAATCATGCTAAGAGCTCATTAACAAATATCATCCtcatcctttttttttgctaaaGATGCCTCTCGAAgacattcatgtattttttcttatcaGAGAATAAACTGCTGCTCGTGAACTAtaactattactactactactaattattattatagaatcTATGGCTTGTATGGCATTTTTTAATGCACGAAAACTTTTGTGTTGCTAGGTTTTGTTTCctataattgtttttgaaaaatatgtagacaaattatttcaaattgggATACGTAAACCTTTGACAAAAACtatattgtgattttgttttttcatttatattatgcTATTTTCCAGTTTGGGGTAAAAAGGTTGCTGAAAGAACATTTGAAAGGTACAAGAGAGCTTTCAAATGAGAATTCAGTGATATAGCCACATAGTCGCCTTCCACTTGCTGCTCGAGTTTGTCAAGCACATAtcagttttatattgttttctgttaattatatgtaaatataatcagagattaaaaataaataaacatttactgataatacaaaataaacttatCTATATTTACAATCTGTCTTCAATATGAAAAAGTTGCTTTAATTGTTCATTAAATGTCCTACATGTATACTGTTACATTTATAGTTACAAATAGCTGCTTAGCTATTTAAGGCACCCACTAACATTTACCTATTACATTTTGAACCTGTGACAgaactatttgtttttatatataactgtCTTATGCTGATAAATGCTTTCATCAACTGTTTCCTATCTAgctgaattcaaataaaatacagatcaaCAAAA

Function

symbol description
epdr1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in hindbrain; midbrain hindbrain boundary; optic stalk; spinal cord; and telencephalon. Orthologous to human EPDR1 (ependymin related 1).

NR:

description
PREDICTED: mammalian ependymin-related protein 1-like

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019711 True 2332 mRNA 0.39 3 38885006 38893548

Neighbor

gene id symbol gene type direction distance location
AMCG00019712 stard3nl coding downstream 19336 38842142 ~ 38865670 (-)
AMCG00019707 NA coding downstream 65726 38816499 ~ 38819280 (-)
AMCG00019706 NA coding downstream 109162 38768161 ~ 38775844 (-)
AMCG00019705 vps41 coding downstream 258202 38626274 ~ 38626804 (-)
AMCG00019704 LOC106590158 coding downstream 534390 38342972 ~ 38350616 (-)
AMCG00019715 NA coding upstream 9255 38902803 ~ 38907186 (-)
AMCG00019714 NA coding upstream 35857 38929405 ~ 38953013 (-)
AMCG00019713 LOC106599471,LOC105920328 coding upstream 86562 38980110 ~ 38989131 (-)
AMCG00019719 NA coding upstream 188554 39082102 ~ 39097112 (-)
AMCG00019720 NA coding upstream 301946 39195494 ~ 39195833 (-)
G36386 vps41 non-coding downstream 265349 38618841 ~ 38619657 (-)
G36349 NA non-coding downstream 430697 38454024 ~ 38454309 (-)
G36312 NA non-coding downstream 766072 38118720 ~ 38118934 (-)
G36284 NA non-coding downstream 911323 37973453 ~ 37973683 (-)
G36267 NA non-coding downstream 1144405 37738275 ~ 37740601 (-)
G36456 NA non-coding upstream 184955 39078503 ~ 39081979 (-)
G36470 NA non-coding upstream 352244 39245792 ~ 39293373 (-)
G36495 NA non-coding upstream 486260 39379808 ~ 39380708 (-)
G36534 NA non-coding upstream 813054 39706602 ~ 39709528 (-)
G36539 gtpbp4 non-coding upstream 918762 39812310 ~ 39813571 (-)
AMCG00019698 NA other downstream 774782 37889444 ~ 38110224 (-)
AMCG00019665 NA other downstream 2903470 35934796 ~ 35981536 (-)
G35867 NA other downstream 3829562 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 4362736 34510733 ~ 34522270 (-)
G35476 LOC107575789 other downstream 6651608 32222064 ~ 32233398 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 523339 39416887 ~ 39505562 (-)
AMCG00019731 NA other upstream 1076627 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 3177514 42071062 ~ 42078932 (-)
G36817 NA other upstream 3650568 42544116 ~ 42544524 (-)
G36862 NA other upstream 3750776 42644324 ~ 42656393 (-)

Expression


Co-expression Network