AMCG00019725


Basic Information

Item Value
gene id AMCG00019725
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39710987 ~ 39728290 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019725
ATGTCAGGGGTGAACGCCCTACCAGGCTTGGGCCATTTTATTAAGGGACGAGACAAAAATTACGCTGCCGCCCTCTTGCTGTGTGGAGGCGCTGCTGCAAGGATGAAAACGAAGAACGAAGTGGAAGCTCTCTTCAAAGGGGAGAATTTACCCAAGTTCATCCACTGTGAGTTTGCCTACAACGACAACTGGTTCATCACATTTGAGTCCGAAGCAGATGCACAGCAGgCCTATAGGTATCTTCGAGAAGAAGTGAAAACATTCCAAGGCAAGCCCATCAAGgcaAGGATAAAAGCTAAGGCAATtgctataaatacttttttgccAAAGAACGGCTACAGACCACTGGATGTGCAACTTTACGCTCAACAACGCTACACAACATCATTTTACATACCTCCAGTGTACAGCCCCCAGCAACAGTTCCCGCTGTACAGCCTAATTACTCCACAGACCTGGTCTACGACGCACAGTTTTCTAGATCCGACGCTGGTAACGCCATTTCATAATACTGGATTTATCAATGGGTTTACATCGCCTAATTTCAAACCCGCTACATCTCCTTTGTCTGTGAGACAGTACCCTCCCAGGAATAGGAATCACAGTAAACCTCATTTGCGACCAACTATACCTACTGCAGACAGAGGGTCCGCGCTCCTGGACAGTCCCactatttttaatttccccacCGAGCGCCTCCTGAACGGCGTGCGGAGCCCTCAGACCCGACCCCTGAGCCAGAACCGGACGCGGCTCCAGGGCGGTGTGAGCTACCCCAAGAGGGACGTGGGAACGGGCCGCGTGGAGCCCATCAGCGCTGACTGTTCCGCCAGCATGGGCCGGGGCAGgaaaaatgtatatGGTTATAGGAAGAAAAGGGAGGACAAGTTTACGAGAGCCCCAACACAGTCCCCACCTCCTCAGAAGCCTCCTTCTCCGAGCTTCGAGCTGGGTCTCTCCAGCTTTCCCCCATTGCCTGGGGCCGCAGGACACCTAAAGGCTGAAGAAGTGTTTGAAAACACACTGTCCAGCATTATAATAGGAACTCCAAAGGACAAGaaTGTAAACATAGATGCCAGTACCAACACTACCCCTTCAGGAATCCCTAAAGAGCATACGCTGCCTCAGACTTCTCCACTGCCAGTGAGCTTTGAGGGACCTCCATCACCACCCCAGTCTCCAGACGAGTTACACATCCAGGAAGTGAAGCAAAGAGAGACGCAGACTCCACTTGAACGGCTGACTGGGACACTGACCACTGCGAGTAAATCCATACAAGTGAATGGTGCAGCTACAGAGCTTCGGAAGCCCAGTTATGCGGAAATTTGCCAGAGGACATCAAGAGACGCTCCGACACTACAGCCTCCGAAAGACCTGAAGCCAGCCAGCCCCCTGGCCCCTGTCACTGAAGACAAGAAATCCCCCGATGGCACAGGGGAGAAAGTGGAGCCCAAATGCCGAGAGACATACCCGGGAAAGGTCATCCCAGGACGGCCCAGGGAAGTTAGGAGACCGCTGGGGAGGAGACCGTCCCCGCCCCCGCCCCTGCAGGGCACCGGAAAACGTCCCATTAAAGATCTCAACACCCCCCCCAAATCTCCCCAGTAAATGCTGCATGGGAACGGAGCTCACAATGGATCAGGGCTGTCCAGCGCTATTCCCAGAGTCACCAGTGACAGCAAAAAGGACATATTTGCTGGATTCAGGGCTTGCAGACAAAAGCACTTTTAGTGTGTAGAGCACattcatgatttttatttattttttctttttgtttttttcgccTTGATTTAGTGTTAATCTGACCTGTTAAAAGGACAGTGCAATTTATTATCTGCTCGCAAATGAGCAATGGCTGGCTTCCAGGAGCAGAGTGTTTTAGCCAGAGGAATAACTGCTTTTTAGTCAGTTACTTCTATTATACGTGGATGTGAGGATCAAAAATGTGAGGTGCAGGACATTGGATCAGATCTCGGGTGGAATAGTGCTGAGCTCACTTGATCTTcgttttacttttatttctcagtttGGTCTTCTGATGTAATTTGTAACGAGTGGCTCTTTGAACTAGCAGGTAATCGGTTTCCACACCGgtcttttcattttacattgctttttgCATTAGGGTGAGTAGAACTACTTTGGCTGACttgatttaaatatagaatacttttttttttccctcttcttaGTGGTTTTACAGCTCATTGAACAGCACTAGAGTATGTTTTGCCAACacagctgattttttttaattttaacaccAGTGTATGGGATTTCTGTTTTTATCATTATGAATATAATGATAAGATTGCTAGTAGAAACATCCTGTCCCTGAAGCCTGCAGTGCATGCTGGTTGTGTTCAGAGCGCCTTAATTAGTTCTCTCTTCCTGTTACACTGAAGAATGCGAGCAGCCATCTGTTGAGGCCCAGGTAACTAGTTCTGATCAATGCGAAGCCTGTGGTGCTGGTGTTGTTGGAGAGGTCGTAGTCAAGGCCAGTGGAAATCTGCATCATCCCTGCCCAAGAGACTGATAGGAGACTTATCCAGTGCAATTAGATGGATTTAGCaggttaatttttatttatttttttctgctctgcCTGTGGGCGTTTCTTGACGATTTTTGTAAAAGTCTGTCGGCAAACTCTGATATTCAGGCACAGAGGCAGCAATAAGTACTGTGATGTTAGCATTTTGTTAACATTAAAGGGGCAGGAGAACATGCAATGTGTTCATTCTGTTAACTGgttcaaaacctttttttttttttctttttcagtttttttccttttagatATGGTGCTAGAGATTGTATtgtaaacttaatttaaattcttACTGTAATATTTAGAAATACTGGATTCATTTGTATAATTTCCATCCCCAAAGTGAATGTTGCACTATTGGTATGTAATAAGGTGTTTaaaaccttttctttcttttttttatcttaaaaggGAACCTTAAGCTGAGAAACTATGTGGATTTTAATACCGGTTTTCTCATTGACAAGAAACAGTGCAGTTTCCTTTGGCTTCTCAAGAACCTAACCCTCCCAGCCCCCAATAGTGTGATAATTTGAGTTATTCCCTCTTGCTTTAACACTTGAATGACTAAGCAGTCAGTAAAAATGCATCAGATGTAGGTTATCATATTCATCTTCCCCACAAAACGAAACACGGAAAAAGTGAAAGTTTTCTTTGTATTCAAGCAGAGGCAGAATCCACAGAATAATGAATCTCAGACATTTTAACTACAGCTTTGACTTCCTGTGTAGCCCTGAAGTCAAACTTATTTATCAATTCCTACTGGTGTGGGTGTTTCCTTACTGTGGCAAAAAAACATATAGGATGGTGGCTAACACAGAGCAGTGTGCTGTATCAGTCCAGAAAGGTATTGGCTCCTCAAATTGCTTGGATCTAATTTCTGCTCAGTGTGATGCTCTTCAATACACTAATTCACTCAGACACTTCGGTTGCATGTGGCGGTGTGTAAAGATTTCAGTAGACAGCACAACATTTGAGTGAATCGTTTGTGGATAACTGATTTGTATTGAAGATATACCTGTGAAGATGcgtacacacatatatactttttttttttttt

Function

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019725 True 3611 mRNA 0.45 11 39710987 39728290

Neighbor

gene id symbol gene type direction distance location
AMCG00019721 LOC106599479 coding downstream 340790 39363964 ~ 39370197 (-)
AMCG00019720 NA coding downstream 515154 39195494 ~ 39195833 (-)
AMCG00019719 NA coding downstream 613875 39082102 ~ 39097112 (-)
AMCG00019713 LOC106599471,LOC105920328 coding downstream 721856 38980110 ~ 38989131 (-)
AMCG00019714 NA coding downstream 757974 38929405 ~ 38953013 (-)
AMCG00019727 larp4b,LOC106599484 coding upstream 5099 39733389 ~ 39740243 (-)
AMCG00019726 idi1,LOC107713854 coding upstream 98065 39826355 ~ 39830587 (-)
AMCG00019734 NA coding upstream 1001403 40729693 ~ 40766188 (-)
AMCG00019738 NA coding upstream 1819628 41547918 ~ 41563384 (-)
AMCG00019739 NA coding upstream 1845986 41574276 ~ 41576305 (-)
G36534 NA non-coding downstream 1459 39706602 ~ 39709528 (-)
G36495 NA non-coding downstream 330279 39379808 ~ 39380708 (-)
G36470 NA non-coding downstream 417614 39245792 ~ 39293373 (-)
G36456 NA non-coding downstream 629008 39078503 ~ 39081979 (-)
G36386 vps41 non-coding downstream 1091330 38618841 ~ 38619657 (-)
G36539 gtpbp4 non-coding upstream 84020 39812310 ~ 39813571 (-)
G36557 NA non-coding upstream 169597 39897887 ~ 39901757 (-)
G36576 NA non-coding upstream 461530 40189820 ~ 40191361 (-)
G36582 NA non-coding upstream 606853 40335143 ~ 40335556 (-)
G36590 NA non-coding upstream 675961 40404251 ~ 40404583 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other downstream 205425 39416887 ~ 39505562 (-)
AMCG00019698 NA other downstream 1600763 37889444 ~ 38110224 (-)
AMCG00019665 NA other downstream 3729451 35934796 ~ 35981536 (-)
G35867 NA other downstream 4655543 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 5188717 34510733 ~ 34522270 (-)
AMCG00019731 NA other upstream 241885 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 2342772 42071062 ~ 42078932 (-)
G36817 NA other upstream 2815826 42544116 ~ 42544524 (-)
G36862 NA other upstream 2916034 42644324 ~ 42656393 (-)
G36982 NA other upstream 3569941 43298231 ~ 43360906 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022993 larp4b coding NC_007135.7 CM002908.2 26997798 ~ 27019540 (+)