AMCG00019726 (idi1,LOC107713854)


Basic Information

Item Value
gene id AMCG00019726
gene name idi1,LOC107713854
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39826355 ~ 39830587 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019726
ATGCGACGCTGCTTGTGGGCGGCGCTGAGGACGGTGGCCTGCGAGGGTCTTTCCGCGGCCAGGCCGGGGACATCCGTGTCTGGGAAGAGCAGAGGAGCGGACGTGTGCGGTGCTCCAGCGGTTACAGCTGTTCACACGATTTCCAGGGGTTTTGGCAGATCGCAGAGGTCGTTGGCAATGCCAGAAATAGACACCAATAACCTGGACGAGAAACAAGTGCAGCTCCTGTCGGAGATGTGCATCCTGATCGATGAAAACGACCAGAGGACCGGAGCTGATACCAAGAAAAACTGCCACCTGAACGCCAACATTGACCAAGgttTACTGCATCGTGCTTTCAGTGTCTTCCTCTTTAACAGGGAAGACAAACTGCTCCTGCAACAGAGGTCTGATGCAAAGATCACGTTTCCAGGCTGCTTCACCAACACATGCTGCAGCCACCCCCTTCACACCCCCACCGAGATGGAAGAACTGGATGCTGTGGGGGTCAGGCGGGCTGCACAGCGGCGACTGCAGGCTGAGCTGGGGATCCCTGTGGAGCAGGTACCCCCAGAGGAAATGACCTACCTGACCAGGATACATTACAAGGCGCAGTCTGACGGGATCTGGGGGGAGCACGAGATCGACTATATTCTGTTTATGCAGAAGGACGTGGAGCTCAGCCCTGACCCCAATGAGATCAAAAGCCACTGCTACGTCACCAAGGAGGAGCTGAAAGAGCTGCTGGAAAAGGCCAAGAAGAAGGAGGTGCTGATCACTCCCTGGTTCAGTCTGATCGCAGAGACTTTTCTGTTCAAGTGGTGGGATAATCTACACAATCTGAAGCAGTTTGTGGATCATGACAAAATCCACCAGATGTAA

Function

symbol description
idi1 Predicted to enable isopentenyl-diphosphate delta-isomerase activity. Predicted to be involved in isopentenyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Orthologous to several human genes including IDI1 (isopentenyl-diphosphate delta isomerase 1).

NR:

description
PREDICTED: isopentenyl-diphosphate Delta-isomerase 1 isoform X3

GO: NA

KEGG:

id description
K01823 idi, IDI; isopentenyl-diphosphate Delta-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019726 True 861 mRNA 0.55 5 39826355 39830587

Neighbor

gene id symbol gene type direction distance location
AMCG00019727 larp4b,LOC106599484 coding downstream 86112 39733389 ~ 39740243 (-)
AMCG00019725 NA coding downstream 98065 39710987 ~ 39728290 (-)
AMCG00019721 LOC106599479 coding downstream 456158 39363964 ~ 39370197 (-)
AMCG00019720 NA coding downstream 630522 39195494 ~ 39195833 (-)
AMCG00019719 NA coding downstream 729243 39082102 ~ 39097112 (-)
AMCG00019734 NA coding upstream 899106 40729693 ~ 40766188 (-)
AMCG00019738 NA coding upstream 1717331 41547918 ~ 41563384 (-)
AMCG00019739 NA coding upstream 1743689 41574276 ~ 41576305 (-)
AMCG00019743 tmx3,zgc:152808 coding upstream 2558393 42388980 ~ 42406310 (-)
AMCG00019744 NA coding upstream 2584023 42414610 ~ 42442771 (-)
G36539 gtpbp4 non-coding downstream 12784 39812310 ~ 39813571 (-)
G36534 NA non-coding downstream 116827 39706602 ~ 39709528 (-)
G36495 NA non-coding downstream 445647 39379808 ~ 39380708 (-)
G36470 NA non-coding downstream 532982 39245792 ~ 39293373 (-)
G36456 NA non-coding downstream 744376 39078503 ~ 39081979 (-)
G36557 NA non-coding upstream 67300 39897887 ~ 39901757 (-)
G36576 NA non-coding upstream 359233 40189820 ~ 40191361 (-)
G36582 NA non-coding upstream 504556 40335143 ~ 40335556 (-)
G36590 NA non-coding upstream 573664 40404251 ~ 40404583 (-)
G36605 NA non-coding upstream 815886 40646473 ~ 40646687 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other downstream 320793 39416887 ~ 39505562 (-)
AMCG00019698 NA other downstream 1716131 37889444 ~ 38110224 (-)
AMCG00019665 NA other downstream 3844819 35934796 ~ 35981536 (-)
G35867 NA other downstream 4770911 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 5304085 34510733 ~ 34522270 (-)
AMCG00019731 NA other upstream 139588 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 2240475 42071062 ~ 42078932 (-)
G36817 NA other upstream 2713529 42544116 ~ 42544524 (-)
G36862 NA other upstream 2813737 42644324 ~ 42656393 (-)
G36982 NA other upstream 3467644 43298231 ~ 43360906 (-)

Expression


Co-expression Network