AMCG00019734


Basic Information

Item Value
gene id AMCG00019734
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 40729693 ~ 40766188 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019734
CTTTCTGCACCGCACGCTGTGACGTCACGCAGTTAGTTTCAGAAGTGGCTTCCTGGTTTATGCAATGCCTAttttttgtagcatttttaGACCCGTGTAGCTGTTTAACTGTGCTGATTTACTTCGTTTAACGGGGAAAATGTCAAGGATTGGTGCCGATAACGAAACCGAAGCTCTGAACAAGTGTAGGTACCGGTTTCCACTGGAGGTCATTGCTGATGTCAGGAAAGTGAGAGACTCATACAGGGATCTGCatctttttttagatttttactCTTACTCAAATGGGGAGAAGAAACAGCTGGTAAACCTAAGTGGTACCCTTCCCATTTTATATCAAGgtaacatttacaatatacCCGTCTGCATCTGGCTGCACGACACACACCCCCAGAGCCCTCCGAAATGTTTTGTAAAGCCCTCCGCTTGCATGGTTATAAATTCCCAGAGCCGATGTGTAGACAAAAATGGGCATGTGTTCCTGCACTACCTCCATAACTGGAAGCATGGAACTTCTAATTTACTAGGAGTTGTAGAGGAGATGAGGGCAGCTTTTCAAACAGAGACACCGGTGTTTGCAAGAGTACTCTCCTCTCATCAACCCCCAACTCCACTCCAGCCAGATGCAGCTCGAGATGACAGCTCCTCACATGCAGATGATTTTGATGACCTTTTCAAGAGTTTGCagcttgaaaatgttttaaatatttacaagttAGATACCAAAGCGAAAGgcttCACCACTACAATGGGTGAACAATTTAACAGTGGGCCCAGCCCCCAGGACCTCCTATTGGTGGACGATAGACATAAGATTGAAGTCAGTAGACTGCCTGGGGGCCTCCCGGAAGccaagatgaaaaacaaacttacCATTTACTTCCAAAGAAGAAAGAATGGAGGTGGAGACATCCTGGGCGTGCAGTACCCCTGCAGTCAGCCTAACCAGGCTTGTGTAACGTTCTGTGACCTGCAAGttGCAGAACGGGTCACCCAACAAGAGGAGCATGTCATTACTTTGAACAACCACAAGTTTCCCATTCAAGTAAAGCAATATGAAAGACCACAGGTGAATATTCCAGTTCCAGAAGGAGTTCCCAAAGAGAAATCGCATGTCTTCCAAAGCCTGCTGACTCTGGAGGGCAGGAGCTTCTCGGTGGACGATGTCATGGAGGCTGTGCAGTCCAACAGAGACTATGACTCTGCGCTGAGGTATCTCTCTCACGAATGCCCCATCTGTAGGGACTTGGTGTCCTTCAGCAAGATCATCACCATGACACACTGTTCCTGTGCATTCTGTGAAGAATGTTTCAAGGCCTACTTCTCCTCTGTCATCAAGGAGAAAAGCATTGTGCATGTGGTGTGCCCAATCTGCAATCAGCCTGATGTGAAAGTACAAGGGTGCACTGAGGAAACTATGGATTTCTTCAACCTACTGGACACACAGATAAAGCACTTCCTGGAGCCCCAAATTCATGAGTTATTCCAAAGAAAGCTGAGAGACAGAACTCTGCTGGAGATGCCCAACTTTCGGTGGTGTGCGCATtgtTCATTTGGGCTCCTGCATGAAGCAGAAAGGTTGCGGATGGACTGTCCCTCCTGTGGGAAAAGCACCTGCTCTCAGTGCAAAACCCCTTGGGCTCCACAACACGAGGGAATAACCTATTGTCCAAACTGCAGATTCCGCTTCTACCTATCCAAAGGCGGCTGCCTACACTTCAAGTGCACTCAGTGTCAGTATGAGTTCTGTGGAGGATGCAACAGGCCCTTCCATGTGGGATCTGCTTGCAGATTTTCAGAGGAGTGTCGTCTGAAAGGGCTACATGCACATCACCCAAGAAACTGCCTCTTCTATCTCCGGGACTGGCCTGTCCGGCGACTGCAGCAGCTCTTTATCCACCACAAAGTGTCCTATTCGCTCCAAATCAGAGGTGGCGAAGCAATGAACTCTGCTGGAAAATGCAGCGTATTGGAGCACAGAGAGACCGAAAGCGGCCTGGTGGAGAAGCAATGTGGGAGACCGGCTCCGCTAGAATACAAGGGGCACTGCGAACTGCATTACAAAGAGTTCTTGGTGGAGCTCATAAACAGCCATTTGCTGGATCCTGCAGTCCTGTTCAGCAAAGATGAAGCTGTCAGCGAACTGCGACGCTTTAAAGTGACAGTCCCTGGGTCTGCTCCCGAGGAACCTGACCAGTCTCACCTACATCGACTAAGACAGAAAGTGATTAAGGAAATCCAGCTGAGCCATGACCCAACCAGTCCACAGAAAGCTGTACCAGGACCCTCTCTAAACTTGTCTGCTGGGCCTACATGGGCTGCTCCAGGAGACAGGAGGCTTCATGACCGATATTCAGACTTACACTTGCTGCTGCTTCAAAGTGAATAAGCAGTGTGGCGGTTACCTCTTCACACTTGTAAGGATTCTatgaatattaacatttttcaacAGAGTACAGGACTTTTTAATGTAGGCATGTGACcaaggaaatatataaaatatgttgtgtTATCACTGGTTGTCATGAAGGAAATCGCTTGGATTTCttaaaaggaagaagaaaatataagtCAGACATAACAGCACTCATATCATTTGAGGTGTCTTTTTGCTCAGGCAGTACTGGGGGGCTTATCCAAATCCTTGCTTTATCGTGTTTATGTTTGGTTGGAAAAAGCCAGATCAGTATCCAACTTTCAACAATTAAGcaacagattttttaaatgaatgtatggTGTGGATATTGTACCCTGTGATGTTGATTTCCAgatgaataaattatttttatatatgtagttTATACTTTCACAGACTAGTGATTAATCGCTCCTACTGCACCCAGAACAACAACTCAATAGTGATGATGAAAAAACAGATTGCAGATGCATACATATTAATATCTTTAATGTACCATATATAACTCCACATATAAGTACAGTATTTTCCATGAAATATTGTACAGAATAGACAGACTTTGCACCCACCTATTATTAGAGCATAACATGTATGCTTGGGGTTGACATGCTTAATAGCATAGCCTTTAGATAAATGATAAGTTAGTACCAGTTGGTGGAGTACTGAATTCTGAGGtctaacaatacaaaataaaaccttgaaaAAACATTTCGGCACTGGCTTCCGTTGCCAGTATAATTGTGGTGCAGCAGACATTTTAAGCAGAGATATTCTGAATCATTGTCATTACTTGGAGTTACATAATGTATAGATAGTACTTGGAAGTGTGTTTGAAGGGAGAATACGTGGAAGAACACATTGGTGAGACTTCTGTTTTGGTCATGTTCACATGCGCTTTTGCTTAAAGTTTGCGAAGGGTGGATATGGAATATTATAATTTGGGTATAACTGTTTTATACTGTAACAAACAGAAATTAGATGGTGCGAGATATGCTACATGATCAGGAAAATTGTGGACCAAACACAGGCTAGATTGTTAATATTGAGTATTGAGGGATTCAATGTGCAATGTTAGTTAAAGACACTAGGTGGCAGCATGTAAAATGGCAAATAGATGCTTCAGATGAAAGGCTATACCCAAATTCTGTGCATAGAAcaagtttttaatatatgtatttccaaACTTGAaaagtttgaatatatattaatttaaatacgaTGGCTATACATTATTAAAGGAGTCCAGGAAGACGCACTGTGAAGTAGATCtgctttttttgtcttttacatCCATGAAAGACctgcatgataaaataaaaagaatccTCATATAGTATGAAATCCACTATTAAAACAATAGTAAAGGAAAAGCCAAAACCGAGACTTGTCATCGGGCATACAAATCTGCATCAATTTAATaagttaaacaaaatgcaaaaaacatgaGTTTATACTCTGTATattacatcattattttttatatgcatCTTTGGTGGCTTTCACAATTGGATTGTTTATAAAATCCACAAGTCTTCCAGAAACatgtaaaatctttaaaatataggctatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K11974 RNF31, HOIP; E3 ubiquitin-protein ligase RNF31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019734 True 4010 mRNA 0.42 19 40729693 40766188

Neighbor

gene id symbol gene type direction distance location
AMCG00019726 idi1,LOC107713854 coding downstream 899106 39826355 ~ 39830587 (-)
AMCG00019727 larp4b,LOC106599484 coding downstream 989450 39733389 ~ 39740243 (-)
AMCG00019725 NA coding downstream 1001403 39710987 ~ 39728290 (-)
AMCG00019721 LOC106599479 coding downstream 1359496 39363964 ~ 39370197 (-)
AMCG00019720 NA coding downstream 1533860 39195494 ~ 39195833 (-)
AMCG00019738 NA coding upstream 781730 41547918 ~ 41563384 (-)
AMCG00019739 NA coding upstream 808088 41574276 ~ 41576305 (-)
AMCG00019743 tmx3,zgc:152808 coding upstream 1622792 42388980 ~ 42406310 (-)
AMCG00019744 NA coding upstream 1648422 42414610 ~ 42442771 (-)
AMCG00019748 NA coding upstream 1725876 42492064 ~ 42507976 (-)
G36605 NA non-coding downstream 83006 40646473 ~ 40646687 (-)
G36590 NA non-coding downstream 325110 40404251 ~ 40404583 (-)
G36582 NA non-coding downstream 394137 40335143 ~ 40335556 (-)
G36576 NA non-coding downstream 538332 40189820 ~ 40191361 (-)
G36557 NA non-coding downstream 827936 39897887 ~ 39901757 (-)
G36650 NA non-coding upstream 235874 41002062 ~ 41002677 (-)
G36652 NA non-coding upstream 244012 41010200 ~ 41010403 (-)
G36699 NA non-coding upstream 962976 41729164 ~ 41729412 (-)
G36710 NA non-coding upstream 1183925 41950113 ~ 41950329 (-)
G36722 NA non-coding upstream 1271347 42037535 ~ 42037735 (-)
AMCG00019731 NA other downstream 605706 39970175 ~ 40123987 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other downstream 1224131 39416887 ~ 39505562 (-)
AMCG00019698 NA other downstream 2619469 37889444 ~ 38110224 (-)
AMCG00019665 NA other downstream 4748157 35934796 ~ 35981536 (-)
G35867 NA other downstream 5674249 35055019 ~ 35055444 (-)
AMCG00019741 NA other upstream 1304874 42071062 ~ 42078932 (-)
G36817 NA other upstream 1777928 42544116 ~ 42544524 (-)
G36862 NA other upstream 1878136 42644324 ~ 42656393 (-)
G36982 NA other upstream 2532043 43298231 ~ 43360906 (-)
AMCG00019761 NA other upstream 2564101 43330289 ~ 43342706 (-)

Expression


Co-expression Network