AMCG00019735 (cdh7,LOC107584702,LOC108432272)


Basic Information

Item Value
gene id AMCG00019735
gene name cdh7,LOC107584702,LOC108432272
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 41324694 ~ 41335203 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019735
ATTATCAGAACAGCCCTTCCCAACATGGACAGAGAAGCCAAGGACCAGTACCTTTTAGTTATTCAAGCCAAGGATATGGTGGGACAAATGGGAGGCCTCTCTGGGACAACCTCTGTGACTGTTACCCTCACTGATGTTAATGACAACCCACCACGCTTCTCCCGCAAATCCTATCAATACAATGTGCCTGAGTCTCTGCCCGCGGCGTCAGTGGTAGCCAAGATAAAAGCTGCCGACGCTGATGTGGGACCAAATGCTGAAATGGAATACAGGATTATAGATGGGGATGGCCTTGGGACGTTCAAAGTTTCTGCCGACAAAGAAACTCATGAGGGACTCATAACTCTTCAAAAGGGCCTTGATTTTGAAACGAAAGCCAGTTACACTTTAAGAATAGAGGCCACAAACAAGAACATCGACCCTCAGTTTCTCAATTTGGGACCCTTCAGTGACACAACGACAGTGAAGGTCAACGTCGAAGATGTGGATGAGCCACCTGTGTTCACCTCTCTGCTGAACAGAATGGTTGTTTCAGAGGCTGCTAAGGTTGGCACTATCATCGGGACAGTATCTGCACATGACCCAGATGCCTCCAACAGTGCAATCAGGTATTCCATAGATCGTAACACCGACCTTGAGAGGTTTTTCAATATTGATGCCATGACGGGGGTCATTAGTACAGCCAAGCAACTGGATCGAGAGCAAAATGCTGTTCATAACATTACCATATTCGCAATGGAAAGCAAAGACCCAACACAAGTGGGAAAAGGGATTGCGATCATCACCGTTATGGACATCAATGACAATGCACCAGTGTTTGCCATCGAGTATGAAACCTTTCTTTGTGAAAATGCCCGGCCTGGACAGGTATAA

Function

symbol description
cdh7 Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction.

NR:

description
PREDICTED: cadherin-7-like

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019735 True 873 mRNA 0.47 6 41324694 41335203

Neighbor

gene id symbol gene type direction distance location
AMCG00019737 LOC107674380 coding upstream 11781 41304834 ~ 41312913 (+)
AMCG00019732 NA coding upstream 595028 40718483 ~ 40729666 (+)
AMCG00019733 NA coding upstream 621772 40691516 ~ 40702922 (+)
AMCG00019729 NA coding upstream 1405673 39913982 ~ 39919021 (+)
AMCG00019730 wdr37,LOC102795438 coding upstream 1435671 39855185 ~ 39889023 (+)
AMCG00019736 cdh7,LOC108432272,LOC107584702,LOC107729377 coding downstream 13238 41348441 ~ 41358215 (+)
AMCG00019740 NA coding downstream 356368 41691571 ~ 41866477 (+)
AMCG00019742 NA coding downstream 1039265 42374468 ~ 42385648 (+)
AMCG00019745 prpf4b,LOC106597319,LOC107670278 coding downstream 1173399 42508602 ~ 42527208 (+)
AMCG00019746 NA coding downstream 1210244 42545447 ~ 42552673 (+)
G36654 LOC100846954 non-coding upstream 182120 41142190 ~ 41142574 (+)
G36644 NA non-coding upstream 453379 40871108 ~ 40871315 (+)
G36604 NA non-coding upstream 678007 40646448 ~ 40646687 (+)
G36601 NA non-coding upstream 744599 40579888 ~ 40580095 (+)
G36598 NA non-coding upstream 834579 40489916 ~ 40490115 (+)
G36698 NA non-coding downstream 393959 41729162 ~ 41729411 (+)
G36709 NA non-coding downstream 614922 41950125 ~ 41950350 (+)
G36716 NA non-coding downstream 697812 42033015 ~ 42033516 (+)
G36720 NA non-coding downstream 701956 42037159 ~ 42037370 (+)
G36744 NA non-coding downstream 878983 42214186 ~ 42270922 (+)
AMCG00019708 vps41,LOC102790284 other upstream 2692516 38578316 ~ 38632178 (+)
G36212 NA other upstream 3808667 37513987 ~ 37516027 (+)
AMCG00019676 NA other upstream 4111175 37178359 ~ 37213519 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other upstream 5025147 36292346 ~ 36299547 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 5260844 36046477 ~ 36063850 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 1221337 42556540 ~ 42572080 (+)
AMCG00019751 NA other downstream 1289527 42624730 ~ 42627105 (+)
AMCG00019755 NA other downstream 1625453 42960656 ~ 42962658 (+)
AMCG00019758 NA other downstream 1926691 43261894 ~ 43271192 (+)
G36954 NA other downstream 1995089 43330292 ~ 43333313 (+)

Expression


Co-expression Network