AMCG00019737 (LOC107674380)


Basic Information

Item Value
gene id AMCG00019737
gene name LOC107674380
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 41304834 ~ 41312913 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019737
CATTGGACTGTGCATACTTTGTCTTTCTACGTTATCGAAGGAGTCAAATTGCAGGCTACAGCAcctgacaaaataaattatcccTACCTACTTTTGATGGGCCTGGCTTCCCCCCGTTGCCTTAACCTTCTCCACTCTGATGTTGACAAAGGGGATGGCGACATCAAATACGTCCTGTCAGGCGAAGGAGCCACTTCCATCTTTATTATTGATGAGAATACTGGAGATATTCATGCCACCAAGAGGCTGGATCGTGAGGAGCAGGCCTATTACACCCTGAGGGCCCAAGCTGTGGACAGGCTCACAAACAGGCCTGTGGAGCCAGAGTCGGAATTCGTCGTTAAAATACAGGACATCAATGACAATGAGCCAAAGTTCCTGGATGGACCCTACACTGCTGGCGTCCCAGAAATGTCTCCAGTGGGAACCTCTGTTGTTCAAGTGACAGCCACTGATGCGGATGACCCCACATATGGAAACAGTGCCAGAGTTGTCTACAGCATTCTGCAGGGTCAGCCATACTTCTCCGTGGAGCCAAAGACA

Function

NR:

description
PREDICTED: cadherin-7-like

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019737 True 543 mRNA 0.50 3 41304834 41312913

Neighbor

gene id symbol gene type direction distance location
AMCG00019732 NA coding upstream 575168 40718483 ~ 40729666 (+)
AMCG00019733 NA coding upstream 601912 40691516 ~ 40702922 (+)
AMCG00019729 NA coding upstream 1385813 39913982 ~ 39919021 (+)
AMCG00019730 wdr37,LOC102795438 coding upstream 1415811 39855185 ~ 39889023 (+)
AMCG00019728 gtpbp4,LOC107721733 coding upstream 1474003 39812077 ~ 39830831 (+)
AMCG00019735 cdh7,LOC107584702,LOC108432272 coding downstream 11781 41324694 ~ 41335203 (+)
AMCG00019736 cdh7,LOC108432272,LOC107584702,LOC107729377 coding downstream 35528 41348441 ~ 41358215 (+)
AMCG00019740 NA coding downstream 378658 41691571 ~ 41866477 (+)
AMCG00019742 NA coding downstream 1061555 42374468 ~ 42385648 (+)
AMCG00019745 prpf4b,LOC106597319,LOC107670278 coding downstream 1195689 42508602 ~ 42527208 (+)
G36654 LOC100846954 non-coding upstream 162260 41142190 ~ 41142574 (+)
G36644 NA non-coding upstream 433519 40871108 ~ 40871315 (+)
G36604 NA non-coding upstream 658147 40646448 ~ 40646687 (+)
G36601 NA non-coding upstream 724739 40579888 ~ 40580095 (+)
G36598 NA non-coding upstream 814719 40489916 ~ 40490115 (+)
G36698 NA non-coding downstream 416249 41729162 ~ 41729411 (+)
G36709 NA non-coding downstream 637212 41950125 ~ 41950350 (+)
G36716 NA non-coding downstream 720102 42033015 ~ 42033516 (+)
G36720 NA non-coding downstream 724246 42037159 ~ 42037370 (+)
G36744 NA non-coding downstream 901273 42214186 ~ 42270922 (+)
AMCG00019708 vps41,LOC102790284 other upstream 2672656 38578316 ~ 38632178 (+)
G36212 NA other upstream 3788807 37513987 ~ 37516027 (+)
AMCG00019676 NA other upstream 4091315 37178359 ~ 37213519 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other upstream 5005287 36292346 ~ 36299547 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 5240984 36046477 ~ 36063850 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 1243627 42556540 ~ 42572080 (+)
AMCG00019751 NA other downstream 1311817 42624730 ~ 42627105 (+)
AMCG00019755 NA other downstream 1647743 42960656 ~ 42962658 (+)
AMCG00019758 NA other downstream 1948981 43261894 ~ 43271192 (+)
G36954 NA other downstream 2017379 43330292 ~ 43333313 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_09185502_09218621 NA coding CI01000004 null 9184835 ~ 9218642 (+)