AMCG00019742


Basic Information

Item Value
gene id AMCG00019742
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42374468 ~ 42385648 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019742
ATGCTCAACATGCTACTTGTCTGCTCTGATTGCAAGCCCACGaCACAATTCCGGCACAAGAGAAAGATCAAcagcagaatagaagatttcATGGCTCTTACTCGAGGCTTGGATGTACTGTCCATCAAAGTGCTGGAGGACGACTACGAGAGTGCGATGTTTGTGGTTCAAATCAAGTGCCGCAATCCAGTGCTGCTGGAGTACTGgcagaagaaagtgtttttctaCAATGGCCAGGTGCAGCAGACGGACACCATTTGCTCCGAGACGATGGACAGCATGGAGTTTGTGTTGCGAGTCCTCCACCGCTCCGAGACCTTATCCAACAGTGACTACTGGAGTCCCTTCATAGTCGCCATTTGCCTGGACGCTCTGTACTTTAACTACCAGCTTCCATCGAACATCATATGGAACGGTAACATTAAACAAGTCATGAAGGAGAACACGTTGTTCTTGACCAAGTGAGAAGCCCAGAAAGCACACACCACGTCTGGAAGAGTGCCCGGGAGCCCACTGCCTTTCTCGAGCACATTCCAAAAGCTGCGATATGTGTTTATCAAGACTGCGCCACCTGCGAATACAGAAGTGCCTGCAATTCggtggaatataaataatttcataGTTTGAGgacactgacatttttatttcattttttgaatcACTTGGCTTGAGATAAAATATCTCTGGATGTCAAATGATTTTAAAACGGCAAAACCGCATTGGATTTCTGCTGCTGAGACTTAACAGGCCAGTGTTCAGTTTTGTTCCCACGTTATGTTAGGGAACCAGGAGACATCAGAAAGTGCCttgaaatgaaagcattgcTCTATAACAAACATTGTTTAATAACCTGTTCTGGTCCTGGGAAAATGAGACCATGCAATGGAGAATACTCCCTAAAAGGCACTGCTAAAAGGTCCAGGTTGTGAAAGTGGGAGACCATAGAGTGCTTTAATATTCTTTTTCTTGGCACTGTACCAGAAAGcattatgaaatataatttttagggagggagaaaaaaaaaaaaaaaatctcacgtTTGGCAgttaaaaggaagaaaaagaagaaagcagcAGTATTACAAGTATGCTTCTAGGTGCGCATTTTCTATGTATTCttagaaggggggaaaaaatttACTATCGGGGGGGTGAAggttgttttttcagttatgAATGATGTAAATCAGTGGTGGACAGCCCTGGTCTAGGGGAACCACGGCCCTGCACATTCAATAGCACCTGTAAACCATCAATAAATGACACCTGGGCAAGCAGACAGGTCTAGTTAAGCAGATGACTGATCCAATTCAGCCACACAGACCTGAGTGGTGACGATGGGCAGAGGGCATGGCAGTTTGGACAGACCAGCCACAGGGGACTCACATCACAGACTGAGTCTCATAACTGCAAGACATCACAATACGAATGTGCAGGACAACCAACAAgcgaaaacacaaacaaaacaacaacaaaaaactatgtGTGAACATCAGTCCTCCTGACACTGTCcttgtgtattattaatgtagtGTTTTAGCAAGTATcggcagaaaagaaaacagaaaaatagtGATTGAGAAACTTTCATCTCTTTTCATTGATGGCTCAAACTAAATGCAATAGTAGAAATGTTACATTGTATCAGTAAGTGGTCCATACCATAAGTTTGATACAAAATGGAACAAGCAGATTTTCTTTAagaatgaatgtaaaaaatgaatgcaggaaataaaaaaaatactctttATAAGAGTGCACTTGAGAGCAGCGAACATGGTGATTGACCATGAATATAACTGCTCCTGTTCAAAACAAGCGGAGTTCCACAGGATTCACGATGAAAGAGAGGTGATAACCATCTCTCTTGATCTGAACTAATGTTATTATGTCAGTAAGTTATACATATTATAGGTTAACTAACATAGAAAGACCATCATACAGTAAAATCTAACATTGACCTTGTATAACtaacaaaaacagacttttaattaACAGCCAGCTGTGCTTAACTTCCATGGAAgtgtttaaaacacattctgaTGGATTCCTATGCAATTGAACAAAGAATTTGAATCCGTCTTTTTTCTATGATTTCCATGTGATTTGTATTTGCAACTGGAACTGAAAGGACACCATCAAAAATAGAACAAACGGTGACTTAACCAAGAGACAATTCGCATTTTCAACCCATTGAAGTCCTACTCGGTGTGAAATACTTCTTCGAATGGACAGGACTGTGTGAGTAATgcagaaaacaactaaaaccaGCTTAACACACCTGATTGAGTATTTGGGTCTAAATGCTTCACACTTGGGAAGTGTTCCATATGTTGACAAATATTAgaagctacatttaaaaaaggagtTGGAGATTTGACCTAATTACATAGTATTCACCAATACAGAAAATGagtcacctttttttttattttataattactgtattttgtctCCAAAAGAAACACACTACTGCAATACCCTTTTAcgattttttttacagttaaattTAATTGTTTAGTGTGTACCGTGTCCAAATTCAGTCCAAAGAAATACAATCCAACCTCCTTTCCTTTTCAGACAAATTTTACTCCTTAATTTTCACGATGGCTTCAAATATTGACACTTCTGCTTCAACATCTGTCACGATTTACATCGCCGGTCTCTGAACTAATTATGATGTAACTTTAGGGGATGactgtaattattaaaaaaaattatgtatttaactgAAGAACAACCccaataaaaaattaaaataaatggtttgagCATAATATAAAAGAGTGCAGGTACTACAGCgtgatttttttcaaattaatcaaatcgTTTCAGTCGTTTGTACTTTCCTAACACCTGTAGTCTAAGAACTAAAATTTTAGAAGACTTCAGGTACATATTAGTGCACGAAGTGTATTTGAAAGAGGCCACAGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019742 True 2935 mRNA 0.39 3 42374468 42385648

Neighbor

gene id symbol gene type direction distance location
AMCG00019740 NA coding upstream 507991 41691571 ~ 41866477 (+)
AMCG00019736 cdh7,LOC108432272,LOC107584702,LOC107729377 coding upstream 1016253 41348441 ~ 41358215 (+)
AMCG00019735 cdh7,LOC107584702,LOC108432272 coding upstream 1039265 41324694 ~ 41335203 (+)
AMCG00019737 LOC107674380 coding upstream 1061555 41304834 ~ 41312913 (+)
AMCG00019732 NA coding upstream 1644802 40718483 ~ 40729666 (+)
AMCG00019745 prpf4b,LOC106597319,LOC107670278 coding downstream 122954 42508602 ~ 42527208 (+)
AMCG00019746 NA coding downstream 159799 42545447 ~ 42552673 (+)
AMCG00019750 NA coding downstream 268999 42654647 ~ 42662493 (+)
AMCG00019753 NA coding downstream 332285 42717933 ~ 42740339 (+)
AMCG00019762 NA coding downstream 913430 43299078 ~ 43302976 (+)
G36754 NA non-coding upstream 62296 42311548 ~ 42312172 (+)
G36744 NA non-coding upstream 103546 42214186 ~ 42270922 (+)
G36720 NA non-coding upstream 337098 42037159 ~ 42037370 (+)
G36716 NA non-coding upstream 340952 42033015 ~ 42033516 (+)
G36709 NA non-coding upstream 424118 41950125 ~ 41950350 (+)
G36807 NA non-coding downstream 146369 42532017 ~ 42532709 (+)
G36816 NA non-coding downstream 158577 42544225 ~ 42544526 (+)
G36842 NA non-coding downstream 196872 42582520 ~ 42582758 (+)
G36844 NA non-coding downstream 199210 42584858 ~ 42585152 (+)
G36845 NA non-coding downstream 217161 42602809 ~ 42603022 (+)
AMCG00019708 vps41,LOC102790284 other upstream 3742290 38578316 ~ 38632178 (+)
G36212 NA other upstream 4858441 37513987 ~ 37516027 (+)
AMCG00019676 NA other upstream 5160949 37178359 ~ 37213519 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other upstream 6074921 36292346 ~ 36299547 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 6310618 36046477 ~ 36063850 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 170892 42556540 ~ 42572080 (+)
AMCG00019751 NA other downstream 239082 42624730 ~ 42627105 (+)
AMCG00019755 NA other downstream 575008 42960656 ~ 42962658 (+)
AMCG00019758 NA other downstream 876246 43261894 ~ 43271192 (+)
G36954 NA other downstream 944644 43330292 ~ 43333313 (+)

Expression


Co-expression Network