AMCG00019744


Basic Information

Item Value
gene id AMCG00019744
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42414610 ~ 42442771 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019744
ATGGCCTCGGCGGTGTTTGAGGGCACGTCTCTGGTCAACATGTTCGTGAGGGACTGCTGGGTCAACGGCGTCCGGCGGCTGGTCATCGGCCGgcggggggaggaggaggacttCTTCGAAATCCGGACCGAGTGGTCGGACAGGAACATCCTGTACCTGCACAGGAGCTGCTCGGACCTCGGGAGGCTGCTGAAGCGGCTGCTGGAGTGTTTCCCGGAGGACCGGGGCGACCTTACCAAGGAAACCGACATTACAGATACAAAGCAAAGACTGGTGAAGATCAAGGAGGCCAGTGACATAGAGGCCAGGCTGAATGAAGTGGAGaggcttttgaaaaatgtcataAATATGCCCTGGAAGTATTCTAGATCGGAAGTTGTCCTCACCTTCTTTGAGAGgTTCGAGAATGGGAGCGAGTTCACCCCCGAGCCTGAGAACAGTGACGATGACCCAGAAGCCTACGTCACCAACCTGTCCTACTATCACCTGGTTCCCTTCGAGACGGATATCTTGGATGTGAACTGCATGACTAAGGGCTACACTCagcaatatggctgccaaaggATCTCTCCCAAGGGTGTGGACGTCCCCGCCCACGTGCACTACACCATCGGGACGGTCATTCTGGTTGTAGGGGTCACGGGGGTCCTGGGGAACTTCCTGGTCATGTACGTTTTCTGCTGGAGCAAGAGTCTGAGGACGCCGGCCAACATGTTCATCATCAACCTGGCAGTGTCTGATTTCCTGATGTCTCTCACGCAGGCTCCTGCCTTCTTCATCACCAGCCTGAGCAAGAGGTGGGTGTTCGGGGAGAGAGGCTGTGAGCTGTACGCCTTCTGTGGGGCCCTGTTTGGGATCTGCTCCATGATCACGCTGATGGCCATCGCAATGGAACGGTACTTGGTGATCACACGGCCGTTGGAGTCCATTGGGGTGATGACGCTTCAGAGGGCTGGGCTGATCCTCGCAGGGGTCTGGTGCTACTCCTTGGGGTGGAGTCTCCCGCCCTTTTTCGGCTGGAGCGCCTACGTCCCTGAGGGTTTGCTGACGTCCTGCACATGGGACTACGTGACATTCACCCCTTCAGTCCGTGCCTATACCATGCTCCTCCTTACCTTTGTCTTCCTGATCCCGCTGGCGGTCATCATGTGCTGCTACTTCTTCATCTTCAAGGCAATCCAGGTGGCGAACCAGGCCATGCAGAAGATCAATGGAGGGGAATCCCAAAAGACGTACGAGAAGATGAGGAATGACTGGAAGATGGCCAAAATCGCGCTGCTCCTGATCCTGCTGTACGTCATTTCCTGGGCGCCTTACGCTGCCGTAGCTCTCACTGCTTTTGCTGGCTATGCCCACCTCCTGAGCCCGTACATCAATTCTGTGCCGGCTGTCATCGCCAAAGCTTCGGCCATCCACAACCCTATCATCTATGCCATCACCCACCCCAAGTACAGGCTCGCCATTGCCAGATATGTCCCCTTCCTGCGGGTGCTGCTCAGGGTGCCCAAGAAGGATGTACGCTCGATGGGCAGCTACTCCTCCGCCCGCTGCTCCACCGTCTCTAGCCAGTCCTCCAACCTCAGCTCCACCAACCCCTGCTGTGAAAAGCCGCCTCTCCTCCACGTCGGACAGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019744 True 1635 mRNA 0.57 7 42414610 42442771

Neighbor

gene id symbol gene type direction distance location
AMCG00019743 tmx3,zgc:152808 coding downstream 8300 42388980 ~ 42406310 (-)
AMCG00019739 NA coding downstream 838305 41574276 ~ 41576305 (-)
AMCG00019738 NA coding downstream 851226 41547918 ~ 41563384 (-)
AMCG00019734 NA coding downstream 1648422 40729693 ~ 40766188 (-)
AMCG00019726 idi1,LOC107713854 coding downstream 2584023 39826355 ~ 39830587 (-)
AMCG00019748 NA coding upstream 49293 42492064 ~ 42507976 (-)
AMCG00019749 NA coding upstream 91133 42533904 ~ 42542454 (-)
AMCG00019752 afg3l2,LOC107589831,LOC107689395 coding upstream 118798 42561569 ~ 42580384 (-)
AMCG00019754 NA coding upstream 253058 42695829 ~ 42715610 (-)
AMCG00019756 NA coding upstream 532597 42975368 ~ 42976338 (-)
G36722 NA non-coding downstream 376875 42037535 ~ 42037735 (-)
G36710 NA non-coding downstream 464281 41950113 ~ 41950329 (-)
G36699 NA non-coding downstream 685198 41729164 ~ 41729412 (-)
G36652 NA non-coding downstream 1404207 41010200 ~ 41010403 (-)
G36650 NA non-coding downstream 1411933 41002062 ~ 41002677 (-)
G36787 NA non-coding upstream 9894 42452665 ~ 42452940 (-)
G36805 NA non-coding upstream 80392 42523163 ~ 42528691 (-)
G36841 NA non-coding upstream 139372 42582143 ~ 42582473 (-)
G36882 NA non-coding upstream 319760 42762531 ~ 42762734 (-)
G36894 NA non-coding upstream 405686 42848457 ~ 42848686 (-)
AMCG00019741 NA other downstream 335678 42071062 ~ 42078932 (-)
AMCG00019731 NA other downstream 2290623 39970175 ~ 40123987 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other downstream 2909048 39416887 ~ 39505562 (-)
AMCG00019698 NA other downstream 4304386 37889444 ~ 38110224 (-)
AMCG00019665 NA other downstream 6433074 35934796 ~ 35981536 (-)
G36817 NA other upstream 101345 42544116 ~ 42544524 (-)
G36862 NA other upstream 201553 42644324 ~ 42656393 (-)
G36982 NA other upstream 855460 43298231 ~ 43360906 (-)
AMCG00019761 NA other upstream 887518 43330289 ~ 43342706 (-)
AMCG00019768 NA other upstream 1134538 43577309 ~ 43713777 (-)

Expression


Co-expression Network