AMCG00019745 (prpf4b,LOC106597319,LOC107670278)


Basic Information

Item Value
gene id AMCG00019745
gene name prpf4b,LOC106597319,LOC107670278
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42508602 ~ 42527208 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019745
GAAAATGGCCGACATGGAGACTGAGGTGGACGGGAAGAGCCTGGACAGTGGCAAAGAGCAGGAAGGCGAAGATGCAGAGAGCTCAGAGAAGAGCGAAAACGAGGAGAATGGGGATGTGTCCGAGGCAGAGGACAAGCTGGAGCCCAAACATGGCAAacacaagaagaagaagcacaAGCACCGGAgcaaacacaagaaacacaagcaCTCCTCTGAGGAGGAGAAGGACAAGGATAAGGACAGGAAacacaagcacaagcacaaaCGCAAGAAACGCAAGAGGAAGGAATCCGTCGCTGCTGGCTCCACCAACGCTACCGGCAAAGGAGACGCCTCACCTTCCAAGCGGCCTAAGCTGGATGACATGGCAGTCTTGGAGGACCTGGAAAAGCAGAGGGCCATGATTAAAGCCGAGCTGGACAATGAACTGATGGAAGGCAAGGTACAGTCAGGGATGGGTTTGATATTGCAGGGTTATAACTCAGGctcggaggaggagggggagatcCAGGAGAGGGCACGCAATGGGGAACAGCGAGGCCCCTCCAAGGCGCTTACCCTGAAAGGCCAGGGTGGGTCACAGTCTGTAAAGGACTCTAAAGCCAAACGCGAGTCGACCGACGGCAAGCCCAGTTCAAAACGTAGGAGCCGGAGCAAGTCCAAAGACCGGGTGAGGACGCACAAGTCAGACAAGAAGAAAAGCAAGAGCGGGGCAATGGAAGGAGCTGGCAAGGAGAAGACGAAAGCCAGGAGCAGGTCAAAGGAGAGGAGGCGCTCCAAGAGCCCAGCCAGGTCCAAGGAGCATTCCCGGAAATCCAAGTCCCCAGCCTCCAGGCGGCGCTCCTCCGTCGAGAGGGCCAGGAAGTCTGCGTCTCCCTCCGGTGATGCAGAGAAAAGCCGGGTAGTTAAGAGGTCACCCCCGCCACCAACCAGCGAAGGCCGGAACAAGGAGCGCAGCCGGAAGTCCAGGTCCCCCGAGCGAAAGAGCAGATCTCGGGAGAGGAAGTCCAGGTCAAAGGAGAGGAAACCCAGGCGCTCGGAGGTCGAAAAGgacaaggacaaggacaagAAACCGGCCAAGTCGCCTTCCAAAGACGCCTCATCCGGGAAGGAGAACCGCTCACCCAGCAGGAAGCGTGGCCACAGCCCTCAGAGGCGCAGTCTCTCACCCAGGCGGAGGGACCGTGTGGTGAAACGCAGTCGATCACCTCCCCCTGCAAATGCCCAGGTGGCCGACAGGGCATCCCCCATCCGGAACAAGTCTCCCGTCAGGAGAGCACGGAGCCGATCTGTAGATCGCAGGCGACGAGAACTCGACCGCCAGAGGCTTTCTCCTGTCAGGGTGCGTACGCGGGACGAGGTGGCCGGGCGGCGGGACAGCCCCCTGATGCCCCGACGCAGAATGAGCCGGTCCCCCCTGAGGAGGAGGTCCCGCTCCCCGCTTAGACGCAGCCGCTCGCCCCGCAGGAGAAGCCGCTCGCCCCTCCGCCGAAGGTCTATGGACAGGGACAGAATGGGTCGGCTCAGGCAGCGCTGGCGTTCGGGCTCCCGGGACCGCAGGCGGAGGCGCAGCAGAGACAAGGAGGACAAGTTCAAAGGCAGCCTCTCAGAGGGCATGAAAGTTGACCAGGAGTCCTCTTCTGAAGAAGTGCTCGAGGACTATGATGTGGATGAAGAGGATGAGGAAGCTCTTATTGAGCAGCGGAGGCTACAGCGGCAGGCCATTGTGGAGAAATACAAGTCTGTGAACGAGGACAGCAACATGTCAGTCCCGTCAGAGCCCAGCAGCCCCCAGAGCAGCTCCAGGAGCCGCTCGCCCTCCCCCGACGACATCCTGGAGAGAGTGGCAGCCGACGTGAAGGAGTATGAGAGAGAGAACGTGGACACCTTCGAGGCCAACGTGAAGGCCAAACACAACCTCATCGCCGTGGAGAAAGATGGATCAAACCCAAAAAAGCCATTAGCCCCAGATATGTTTACAGAATCTGATGACATGTTTGCTGCATATTTTGACAGTGCAAGACTCCGAGCAGCCGGTATTGGGAAGGACTTCAAAGAGAACCCCAATCTCAGGGATAACTGGACTGACGCCGAGGGTTACTATCGTGTGAATATCGGAGAGGTTTTAGACAAGCGCTATGGTGTGTACGGCTACACCGGCCAGGGAGTCTTTAGTAACGTGGTGCGAGCCAGAGACATGGCCAGAGCCAGCCAAGAGGTGGCAGTCAAAATCATCCGCAACAATGAGCTCATGCAGAAGACTGGACTGAAAGAGCTGGAGTTCCTTAAGAAACTCAACGATGCCGACCCTGATGATAAGTTTCACTGCTTGCGACTTTTCAGGCACTTCTACCACAAGCAGCACCTCTGTCTGGTGTTCGAGCCCCTCAGCATGAATCTGCGAGAGGTGCTGAAGAAATACGGCAAAGATGTCGGCCTGCACATTAAAGCAGTGCGCTCCTACAGCCAGCAGCTCTTCCTGGCTCTCAAACTCCTCAAAAGATGCAACATCCTGCATGCCGACATCAAACCCGACAACATACTGGTAAATGAATCTAAAACTATCCTCAAGCTGTGTGATTTCGGCTCCGCTTCACATGTCGCAGATAATGACATCACTCCATACCTCGTCAGTAGATTCTACCGAGCGCCTGAGATCATAATTGGAAAACCTTACGATTACGGCATTGACATGTGGTCTGTGGGCTGCACCCTATATGAACTGTACACTGGAAAGATCTTGTTTCCAGGGAAGACCAATAACCACATGGTGAAACTCGCAATGGACCTCAAGGGAAAAATGCCAAACAAGATGATCAGGAAAGGGTTGTTCAAAGACCAGCACTTTGACCAAAACTTGAACTTCTTGTATATCGAAGTGGATAAAGTGACCGAAAGGGAGAAAGTGACCGTGATGAGCACCATTAACCCCACCAAGGACCTGTTAACTGACATGATCGGCTGTCAGAGGTTGCCTGAGGATCAGCGGAAGAAGGTCATTCAGCTGAAGGACTTGCTGGACCAGATCTTGATGCTGGATCCAGCCAAGAGAATCAGCATCAACCAGGCTCTGCAGCATCTCTTCATTCAGGAGAAGATCTGAGCACACAAGTACATTGGGTCTCGGAATAACCTCAGAGACTGAAGGATTcatagaaaaacatatttttaagtaatgttttttttgttttgttttttattttcacccacataaatacttttgttttattatgaagtACAGCACCAAAGTAGGGGTCCAAGAATCTTTCACACAACCTGCAGCAAGCTCAGCTCCCGGCTTAAAAGGCAGTTTTGAAATTCGAACGTCAAAGGCCAGTTTTAGTTGGCAAATTATTTACTTTCCACATGGGCCATTCCGGTTAATATTTAAAGTTGGGGGAGAAAAGCTGATCCCtagatttttatttagttttttcaataaaaaaaaaaaaaaaaagaatcgcTCATTCTTGGGCCCTTGCAGGTATTGTTGCAGAGGATATAATgactgtaaataaattattgtattgttcagATTCTGATTGTAGGGAAAGTTGCCAAGGCTGCACAGAGAATcctaaaactaaataaaagcgCTTTCTATGATTGTACACATTTTACAGAGCGTTGTTTATGCCATAacttgtatcttttttttttaaacctacacacacacatacacctacacacatatatgtatacatatgtgtgtgtgtgtgagtgtgtttagtGTTTGTGCAGATTTGGCAACCATGCTTTCTGTGAAAAGACCAGCGTAAATGCTGTTTATATTCACGTTTTCCTAGGTGTATGTGTGCAGGCCACAGCAGAATGCCCTTGGTGTAGTTCTGTGCCGAAGGGAGGTCTGTCCTACTTGAGCCTGCCTGCAGTGACGGTCTCCTCTTTTAAAGCAGGTTGTGTACCACTTTCAGTACACTGAAGGTAAGCTTAAACCCATCAACTTCACTGGTGTTCTTGCACATTAGTACACACTGGCAAAGACCGTACTGAAGAGTGTTTGGCTTTTTGGCATTTTGCCTCGTGCATGTTcctaaatgtgaaaaacaaacaaaacaacaaaaaaaacaaccaccttGAGCTAAGTGCcgacattttgtttttggtttgattaTGATAGTTGTTTTCTCCCTCCAAAATGGCTTGGCagttgaaattgaaaaaagtaaattaaattaaccacacactacacactaatAGGGGAAGTTTTGATGGATGATGGCGCCTTCAGTGTACTGcttcttttataaataaaatctttgcAGAACCGTTCACACTTATCTGAACTACAGTGTAGCTATAcataaatttattttttatttttttctttagtaaCTGCATGTCAGGGCTAAGTGGGCATTTCTTTGGTCTGAGTTTTAAAAGTTGCGTTTAACTTCATGGAAAGTTAGCACTTTTTATGGttatagattttttgttttgttttattgtcttgtCTTTTGACCTCTCATTTTTGCGATCATGTTGTCTTTCAATACAGGCATATTCCTTCCGCTCTTGAGTATACACCTGCTTATTTTAAGCGGTAATTGCTTCTTTACCTTTTCCTTTGTACTGTTGACACATTTTAGGGGAtttaggaaaagaaaagagggggggaaagaaCCCAAAGTGTAGTGTTGCCCAATCTAAGTTTGTCTTTGCTTATTGTAATATCAGTAGACTTCCCTGCATGTGAAGTGACCCATGCagatttactgtacattttcagtATGCATCGTAAAGCATCATACAATAAAGtctttttgtggaaaaaaaaaacatggctgcaGACATTAAGGTAttgttgtaatatatattttcttcatgcactaacttttttttattttttaacagtaacACCTTAATTTTCTTTAAGTAGATTTGTATCATAAATAACATCttaggataaaaacaaaattagatCTCTAAATTTGACCTTCATTGCAGCTTTTATTTGTATGGTAAAGAGAACCTGAAAAAGAGACTATCACCTGCAGTTTGTTTCTTCTAAACTAATTCATGTTTGTGATGTTTTCTCACTTTTCCCTCTGGTTGCTGAGAGAGACCTAAAATCAAGTTAAGCTTCAAAGCCAGGAGACACAGTCCGCATCCTCTGCTCCATGGTTCTACTTTGAAAAGAGACAAGGCCTTCATCTACTTGACAAGGTCATTTCTGATGGCATGTGTAGATAAACCCTGTGGCAGTAAATGAGTTAACGGAAATGCTTTTTCTATCAGgttttttttatcatgattAAGACATTGATCCCTTGAGCTCAGCTGAGACGAACAGGAGTATTTCATTTTGGAGTGGTGAGATGTGAAAATGTGATCGTGGGTTTATATTTGCTTCAATATACAGTGTCACCACAGTTACCCTTGCTGTCACGCTTCTGGCATTTCACATTAGGAGCttcgtttttatttatttttattttattttacccccCACCTTTTAAACTTGTGGTTAAATATGCTAAGCTGTTTtttagatacaaaaaaaaaactatcatgGAATTACCATCCAGGGCattgtctttaaataaaatgtaaccccCTACCCCCTTATGAGCAGCTTTTAAAATTTTTAATGAATGGGAGTTACCTCCCCATATGCATTTCACTTATCTTTAACTTACGGAATGGaaagtcttttatttttaactgaaacGGTGCAGTGTATGCTTTTGACATGAAAGGTACGAAGTAAGTTTTACTTAATGGTTCATTTCAAGTTCAGTATCTTCTATCGTTTTCAAAGTAAACCAGTCCtttttggcttgttttttttagtcTCTTTATCAATTAGTTTAGAAGAAATGTATCCAGACGCTGgttcatgtgttttttgtatcCTAGGTGCTGTCCCATTGAAGACTGCAAGGATACCAAGACCTGCACAAAGGTTTCTGTTATAGAAAGAGCTTCATGTGGAGCATTTTGAATGTCCAATATTCTTGCTTGAGTTTTGTGACTTCACTTGTGCGATAGCCTCCCTTTTCCTCCTATTATTGTCCAGAATCAGATGCATCTATCAGTGTACCATATTCTAGAAATGAATGCATTCCTTATTAGTGGGATCCAATTTGGATTGACTTACCGCACAGCCATATCAAATGTTTACGTTCGGTTGTTCCTTACCTGACCTTTTCAGATGCAATGTGAAGCAATCGCTATGTCACAATGAGTTTCTCTAACAAAGCAGCTGTTGGTTACTGTCTTCCAAAGCGTGTGTGAATGACTTTCCTAAATTTCCATCATTAGTATGGTATGAGATTTATTAGTCTTAATACTGTAGGGATTACCAGCTGGGAGGATATGAACAACATTGCTGGAACCTGTGATTCAGAAATGCAGGACAATGGGAAATTTGGAAGTACCTGTTTAGAATATCAGGCCCCATAATGGCCATTTTCCTTTCACTTCgcagttttattttcctccaaatATCACCACTTCCCCAGGATAGGGGTCGATCTTGACTGACTTGTTCAGCTAGAGAATTATTGATACTTTGTTACATAATGCAGAAGATTCACATTGCAGCTGAATATGAATACCTAGATCTAAAAACCAAATTGGTTATTCCCCAAAAATGTTTAAGatgttttccctcactgtacgtgGCTATTTCAGCAACCAACCTTGTGAAGGTAATATTTTCTTATCTTTGGAAAAATATGCAAGGGAGCACTAATTGTACTCGTTGTAAACcgtgcttttcttttctcttgtgTCTTGCAGGGTAGGTACAAGTCTCTTGGATGTTTGACCTGATGCAGGGATCGTCAGTTATCCTAGGCCCAGGGATCGGACGCGCTGCACCTGCTTCGTTGATAAttaatgcagttttatattcagtgttttttattttgtgacatacactttcattaaatgtttaagaacttttccaataaatataaattcaacTAA

Function

symbol description
prpf4b Enables RNA binding activity. Predicted to be involved in protein phosphorylation. Located in nuclear speck. Part of catalytic step 2 spliceosome.

NR:

description
PREDICTED: serine/threonine-protein kinase PRP4 homolog

GO: NA

KEGG:

id description
K08827 PRPF4B; serine/threonine-protein kinase PRP4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019745 True 6951 mRNA 0.45 15 42508602 42527208

Neighbor

gene id symbol gene type direction distance location
AMCG00019742 NA coding upstream 122954 42374468 ~ 42385648 (+)
AMCG00019740 NA coding upstream 642125 41691571 ~ 41866477 (+)
AMCG00019736 cdh7,LOC108432272,LOC107584702,LOC107729377 coding upstream 1150387 41348441 ~ 41358215 (+)
AMCG00019735 cdh7,LOC107584702,LOC108432272 coding upstream 1173399 41324694 ~ 41335203 (+)
AMCG00019737 LOC107674380 coding upstream 1195689 41304834 ~ 41312913 (+)
AMCG00019746 NA coding downstream 18239 42545447 ~ 42552673 (+)
AMCG00019750 NA coding downstream 127439 42654647 ~ 42662493 (+)
AMCG00019753 NA coding downstream 190725 42717933 ~ 42740339 (+)
AMCG00019762 NA coding downstream 771870 43299078 ~ 43302976 (+)
AMCG00019759 NA coding downstream 835793 43363001 ~ 43368277 (+)
G36754 NA non-coding upstream 196430 42311548 ~ 42312172 (+)
G36744 NA non-coding upstream 237680 42214186 ~ 42270922 (+)
G36720 NA non-coding upstream 471232 42037159 ~ 42037370 (+)
G36716 NA non-coding upstream 475086 42033015 ~ 42033516 (+)
G36709 NA non-coding upstream 558252 41950125 ~ 41950350 (+)
G36807 NA non-coding downstream 4809 42532017 ~ 42532709 (+)
G36816 NA non-coding downstream 17017 42544225 ~ 42544526 (+)
G36842 NA non-coding downstream 55312 42582520 ~ 42582758 (+)
G36844 NA non-coding downstream 57650 42584858 ~ 42585152 (+)
G36845 NA non-coding downstream 75601 42602809 ~ 42603022 (+)
AMCG00019708 vps41,LOC102790284 other upstream 3876424 38578316 ~ 38632178 (+)
G36212 NA other upstream 4992575 37513987 ~ 37516027 (+)
AMCG00019676 NA other upstream 5295083 37178359 ~ 37213519 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other upstream 6209055 36292346 ~ 36299547 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 6444752 36046477 ~ 36063850 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 29332 42556540 ~ 42572080 (+)
AMCG00019751 NA other downstream 97522 42624730 ~ 42627105 (+)
AMCG00019755 NA other downstream 433448 42960656 ~ 42962658 (+)
AMCG00019758 NA other downstream 734686 43261894 ~ 43271192 (+)
G36954 NA other downstream 803084 43330292 ~ 43333313 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_12404227_12411145 PRPF4BA coding CI01000004 null 12403532 ~ 12411665 (-)