AMCG00019752 (afg3l2,LOC107589831,LOC107689395)


Basic Information

Item Value
gene id AMCG00019752
gene name afg3l2,LOC107589831,LOC107689395
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42561569 ~ 42580384 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019752
CTGACACGGTCACAATGGCGGAGCAACGCAGGGCCAGCGCTTCGTACAGATTCGTATTTCACACGTTTTAATATCGGAGAATTATAACCGCAATCGACAGGATGTTCCACCGCTATCTGCTCCTGTCTAGGGGCTGTAGGAGTGTATTTAAAAGCTGGCTGTGTCCCAACAACGCCAGAGCCAGACCGGTCTCAGTACAAGCAAACAATCATGTAGCAGTGGATAGGAGAGCATTACTGGCTGATGTCATTGGCGTTTATAGGAGACTCTGCTCCCGGCCACCAAAAGGATTTGAGAAGTATTTTCCTAATGGCAAAGGtcccaaaaaaaacaatgaatcgACTGGAGTTGCCAATGGATCTAAAGAAGCCAAGCCTGCCAATGCCAAGAAAACCTCTGGGACTAGTGACGGAGgaggtgaaggaggaggaggaggaggaggggggaagagAGGAGGCAGGAAGGAGGAGCCAAACTGGTGGACTCGCATGCAGAAGGGAGACGTCCCCTGGGATGATCGGGATTTCCGCCTGTATCTCATGGCAGGGGCAGCCTTTTGGGCAGCTGTTGCCTACTACTTTTTCTTCCGGAATTCGGGTAGGGAGGTCACATGGAAGGACTTCATCAACAGCTATCTCACCAAAGGGGTTGTAGACAGACTAGAAGTGATCAACAAGCGATATGTGAGAGTGATTTTTTCTCCTGGGAAAATGCCGGTTGATGGACAATACGTCTGGTTCAACATTGGCAGTGTGGACACCTTCGAGAGAAACCTGGAGACCATCCAGCTAGAGATGGGCATCGAAGGGGAGAACCGGCTACCAGTGGTCTACACTGCGGAGAGTGATGGcTCCTTCCTGTTGAGCATGCTGCCCACTGTACTGATCATTGGCTTCTTGCTGTACACTCTGCGGAGGGGTCCAGCCGGGGGGGGTCGCACCGGCCGGGGCATGGGAGGCCTCTTCAGCGTGGGGGAGACCACGGCCAAAGTCCTGAGGGACGAGATCGACATCAAGTTCAAGGATGTAGCCGGCTGCGAGGAGGCCAAGATGGAGATCATGGAGTTCGTCAACTTCCTGAAGAACCCAAAGCAGTATCAGGACCTGGGGGCCAAGATCCCGAAGGGTGCTATTCTCACAGGACCCCCAGGCACCGGGAAGACACTCCTGGCCAAAGCTACAGCCGGAGAGGCCGACGTGCCTTTCATTACAGTGAATGGCTCGGAGTTCTTGGAGATGTTTGTGGGTGTGGGGCCAGCACGGGTGCGCGACCTGTTTGTTATGGCACGCAAGAACGCTCCGTGTATCCTGTTTATCGACGAGATCGACGCCGTGGGCCGAAAGAGGGGCCGGGGGAACTTCGGAGGCCAGAGCGAGCAGGAGAACACCCTGAACCAGCTGCTGGTGGAGATGGACGGATTTAACACCACAACAAATGTGGTAGTGCTGGCTGGAACAAACAGGCCAGACATCCTGGATCCTGCACTGATGAGACCTGGACGCTTTGACAGACAGATATATATTGGGCATCCTGATATCAAAGGCAGGGCTTCCATTTTCAAAGTTCATCTCCGGCCCCTAAAGCTGGAACCAACCCTGGACAAGGAAGGCCTCGCCCGGAAAATGGCAGCCTTAACTCCAGGTTTCTCAGGCGCAGACATCGCTAACATCTGTAACGAAGCGGCGCTCATCGCTGCAAGGCATCTCTCGGATGCAATCAACCAGAAGCACTTTGAGCAGGCCATCGAGCGTGTCATAGGAGGTCTGGAGAAGAAGACCCAGGTCCTGCAGCCTGAGGAGAAGAAGACTGTGGCCTACCATGAGGCAGGACACGCCATCGCCGGCTGGTTCTTGGAGCACGCCGACCCTCTGTTAAAGGTTTCCATCATCCCCCGAGGGAAGGGCTTGGGTTACGCCCAGTATCTGCCCAAAGAGCAGTACCTGTACACCAAGGAGCAGCTGCTGGACCGCATGTGCATGATGCTGGGAGGGAGAGTGGCGGAGGAGATCTTCTTTGGGCGGATCACCACGGGGGCCCAAGACGACCTGCGCAAGGTCACCCAGAGTGCCTATGCACAGATTGTCCAGTTTGGGATGAATGAGAAGGTGGGCCAGGTGTCCTTCGACATCCCCCGGCAAGGGGAGATGGTGCTGGAGAAGCCCTACAGCGAGGCCACCGCCTGGCTCATTGACTCCGAGGTGCGCTGCCTCATCAACGAGGCCTATGAGCGCACGCATAAGCTCCTGTCGGAGAAGAAAGCCGAGGTTGAAAAGGTTGCACTACAGCTGTTGGAAAAAGAGGTGATTGACAAGCATGACATGGTGGAGCTGCTAGGCCCCAGACCCTTTGCAGAGAAGTCGACATACGAAGAGTTTGTGGAAGGGACTGGCGGTCTGGATGAGGACACCACTCTCCCAGAGGGGCTGAAAGACTGGAACAGAGACAGAGCGAAGGACAAGGAAGAGAGCACGGACGAACAGATTGCCAGGCAGATTACGGGAGGAATGCCCTTCTGAGAGGTGCTACTTCTCTCTCCCGGGTTCAACCTAGAGAATCCAGGTCCAGAACTCTGGCTCTTACTTGTGGCAAGGTGCTTTTGAAAAAGGAGCAGGAAACATAGGCTACCATTTCTTGCTGTCTGATCACTGTTCATCTATCCAGACAAGGAACgtaaagagggggaaaaaaaacatttgagaagATCTTTGCAATCTCACACTTGATTCTGCTTCTGTGAAGTGGAGAGGAATGTCGACCGCAACAGAATAAAGCAAAATCTAACAAACAAGCGGATGTAAGCAACGggaagattttaattaatttaaagtgcatCACATAGTGTGCCATCAAGCTGTCTTGTGTGCTTTCACATTGGTAATTATTGATGGTGTGTTGCTTTATGTGCCAGCTCTTCTGAGGAGTGGGAGGGGCTACATCCCAAAGGAAATAGTTTTCATGTTCTGTAGGgggtggaaaaagaaaagggggaaaaaaatgtatagcacCTCACATTGAACACGCAGTATTGATCTGGCATTATACTCTGGCAGAATCCTTGCTTGTAAACCTTTGCCCCATTGCAAAGTGTGATCATAGATTTCTTCAAGCGAACCCCAGAAAACTGCAGGGGCTAGGGGGCCCTCACCTCCTTCAGGGAACTTTAGTTTTTCGCACTTAAGCGGAGGTGGTGTGGGACGCTGGGAATTATAAAGGTGCTGGGCGAAGAAGAGGTTTTACAAGAGCACCCAACACTGGTGTCACTGGTGCCACCcagtattaattttgtttgttttattgcaacAAAGAGCCCTGTATCCCCCAGGGGCTGTCCCAAATACTCAAGCACGCTGTGGGCCATTTTCAGCTGACAGTCGGCTTCCAATCCACAGCAACTGCTCATACCACAGGCTCTTAACGCACCAGCTGTCAGGCTCTCGGCTGCAGCCTAAATGTTGGCACTGAACTAAGAAGACCAGTCTTATTTGTACAAAACTTTCTCCCACCTGTCTTTTCTTACGGTACGCAAAGCAAACTCACTATTTGGGCAGAATTGGCAGAGTGACTTGATGTTAATCATTTTAGGGATTTTAGGGATgtgatctattttttttttctattcttttgtgattgatctaaaacaaacaaatctatatGGATTGGAATTcgtttgcattttatttctgtttgtctgtttttttgcaAGTGGACGTCCACGAAgggtaatgtaaaatacactgtaaatgtaCTTCTGTTCACCGTGTCAATGTTTTTTCAAAGCGCTGTAAAAgaggacaaatatatatttaaaaaggactTGTTTGGAGGTGGTTTCATTTGGACATTGGTCTGCGACATCTCATTGTGTCATTATACATGATTCTTGTATTCCTGGGCCTTGgaatgtgtatatgttttacaaGCAGACTTTTTcaacaaaatcaatatataatgtGCTCTGACGTGAGGAGCACTCGGACCACTGGGCCAGTGTATAGCAGTTGAATCCTAGCAGCTGTTGTCAATGACGAGGGGGATTTTGTTCCTTATGGTGGAATGCAGGGCTTTTCAGGCAGGGGGCAGAGGGAATGTGCAAAGCCATTTGCAATGAAGAAAAACTCAAATATAATCGGAGGACTTATATGTGACCTGCAATCCCCGTATCGGCCTTTTCAACCTTACAGCTCAGGACAATGTTACGATCTCCTACATTGGTCCTTGCAGACATCCCTGATTTATAATTG

Function

symbol description
afg3l2 Predicted to enable ATP binding activity; peptidase activity; and zinc ion binding activity. Predicted to be involved in mitochondrial protein processing and protein-containing complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of m-AAA complex. Human ortholog(s) of this gene implicated in optic atrophy 12; spastic ataxia; spastic ataxia 5; and spinocerebellar ataxia type 28. Orthologous to human AFG3L2 (AFG3 like matrix AAA peptidase subunit 2).

NR:

description
PREDICTED: AFG3-like protein 2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08956 AFG3; AFG3 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019752 True 4241 mRNA 0.50 17 42561569 42580384

Neighbor

gene id symbol gene type direction distance location
AMCG00019749 NA coding downstream 19115 42533904 ~ 42542454 (-)
AMCG00019748 NA coding downstream 53593 42492064 ~ 42507976 (-)
AMCG00019744 NA coding downstream 118798 42414610 ~ 42442771 (-)
AMCG00019743 tmx3,zgc:152808 coding downstream 155259 42388980 ~ 42406310 (-)
AMCG00019739 NA coding downstream 985264 41574276 ~ 41576305 (-)
AMCG00019754 NA coding upstream 115445 42695829 ~ 42715610 (-)
AMCG00019756 NA coding upstream 394984 42975368 ~ 42976338 (-)
AMCG00019757 myrip coding upstream 437725 43018109 ~ 43151658 (-)
AMCG00019760 acad11 coding upstream 693646 43274030 ~ 43282805 (-)
AMCG00019763 LOC102782841,LOC107589980 coding upstream 789512 43369896 ~ 43399130 (-)
G36805 NA non-coding downstream 32878 42523163 ~ 42528691 (-)
G36787 NA non-coding downstream 108629 42452665 ~ 42452940 (-)
G36722 NA non-coding downstream 523834 42037535 ~ 42037735 (-)
G36710 NA non-coding downstream 611240 41950113 ~ 41950329 (-)
G36699 NA non-coding downstream 832157 41729164 ~ 41729412 (-)
G36841 NA non-coding upstream 1759 42582143 ~ 42582473 (-)
G36882 NA non-coding upstream 182147 42762531 ~ 42762734 (-)
G36894 NA non-coding upstream 268073 42848457 ~ 42848686 (-)
G36907 NA non-coding upstream 361858 42942242 ~ 42942499 (-)
G36977 NA non-coding upstream 686509 43266893 ~ 43303060 (-)
G36817 NA other downstream 17045 42544116 ~ 42544524 (-)
AMCG00019741 NA other downstream 482637 42071062 ~ 42078932 (-)
AMCG00019731 NA other downstream 2437582 39970175 ~ 40123987 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other downstream 3056007 39416887 ~ 39505562 (-)
AMCG00019698 NA other downstream 4451345 37889444 ~ 38110224 (-)
G36862 NA other upstream 63940 42644324 ~ 42656393 (-)
G36982 NA other upstream 717847 43298231 ~ 43360906 (-)
AMCG00019761 NA other upstream 749905 43330289 ~ 43342706 (-)
AMCG00019768 NA other upstream 996925 43577309 ~ 43713777 (-)
AMCG00019799 NA other upstream 2316115 44896499 ~ 44910150 (-)

Expression


Co-expression Network