AMCG00019757 (myrip)


Basic Information

Item Value
gene id AMCG00019757
gene name myrip
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43018109 ~ 43151658 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019757
ATGGGAAGGAAGCTGGATCTGTCAAGCTTGACTGAAGATGAAGCCGAGCATGTCCTCCAGGTGGTGCAGAGAGACATGCGGCTCCGGAAGAAAGAGGAGGAACGTCTCAGtgaGATGAAACAGGAGCTGGACGAGGAAGGCAGCAGATGCACCATCCTGTCCAAGCAGAACAAGTTCAATGAGCACTGTTGCATCCGCTGCTGCAGCCCCTTCACATTCCTGCTCAACCCCCGGCGCCAGTGCCTGGACTGCGGCTTCAACGTGTGCAAGAGCTGCCGGCTCTACAGCAAGAAGGACAAGGCGTGGATCTGCGCGGTGTGCCAGAAGAGCAGGTTTAGAGTTAAGCAGCCCGCTCTCCCGGCCGCCCAGCCAGAGTTCCCGGCCCAGGTCCCGATCCCGATCCCGGCCCGCCGCCgtgaaccagaggtcccgatcctgATCCCGATCCAggccgccgccgccgaaccagaggtcccaaTCCCGATCCTGATCCCGGCCGCCACCGCcaaaccagaggtcccgatcccgatCCCGGCCGCTGCCGCCAAACCAGAGATCCTgatcccggccgccgccgccaaaccagaggtcccgatcccgatCCCGGCTGCCGCCGCCGAAAaagaggtcccgatcccggccaCCGCCGTAGAGCCAGAGGTCCTAGTCCCGAtcccgatcccggccgccgccgcACAGCCTTAG

Function

symbol description
myrip Predicted to enable actin binding activity and myosin binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in perinuclear region of cytoplasm and transport vesicle. Predicted to be active in cortical actin cytoskeleton. Orthologous to human MYRIP (myosin VIIA and Rab interacting protein).

NR:

description
PREDICTED: rab effector MyRIP isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019757 True 705 mRNA 0.64 4 43018109 43151658

Neighbor

gene id symbol gene type direction distance location
AMCG00019756 NA coding downstream 41771 42975368 ~ 42976338 (-)
AMCG00019754 NA coding downstream 302499 42695829 ~ 42715610 (-)
AMCG00019752 afg3l2,LOC107589831,LOC107689395 coding downstream 437725 42561569 ~ 42580384 (-)
AMCG00019749 NA coding downstream 475655 42533904 ~ 42542454 (-)
AMCG00019748 NA coding downstream 510133 42492064 ~ 42507976 (-)
AMCG00019760 acad11 coding upstream 122372 43274030 ~ 43282805 (-)
AMCG00019763 LOC102782841,LOC107589980 coding upstream 218238 43369896 ~ 43399130 (-)
AMCG00019765 NA coding upstream 405241 43556899 ~ 43563516 (-)
AMCG00019769 NA coding upstream 652502 43804160 ~ 43809705 (-)
AMCG00019771 nrn1,LOC106590090,LOC106578581,LOC107713755 coding upstream 723267 43874925 ~ 43877635 (-)
G36907 NA non-coding downstream 75610 42942242 ~ 42942499 (-)
G36894 NA non-coding downstream 169423 42848457 ~ 42848686 (-)
G36882 NA non-coding downstream 255375 42762531 ~ 42762734 (-)
G36841 NA non-coding downstream 435636 42582143 ~ 42582473 (-)
G36805 NA non-coding downstream 489418 42523163 ~ 42528691 (-)
G36977 NA non-coding upstream 115235 43266893 ~ 43303060 (-)
G37022 NA non-coding upstream 374749 43526407 ~ 43555509 (-)
G37021 NA non-coding upstream 404085 43555743 ~ 43556744 (-)
G37048 NA non-coding upstream 670676 43822334 ~ 43822820 (-)
G37171 NA non-coding upstream 1257559 44409217 ~ 44410259 (-)
G36862 NA other downstream 361716 42644324 ~ 42656393 (-)
G36817 NA other downstream 473585 42544116 ~ 42544524 (-)
AMCG00019741 NA other downstream 939177 42071062 ~ 42078932 (-)
AMCG00019731 NA other downstream 2894122 39970175 ~ 40123987 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other downstream 3512547 39416887 ~ 39505562 (-)
G36982 NA other upstream 146573 43298231 ~ 43360906 (-)
AMCG00019761 NA other upstream 178631 43330289 ~ 43342706 (-)
AMCG00019768 NA other upstream 425651 43577309 ~ 43713777 (-)
AMCG00019799 NA other upstream 1744841 44896499 ~ 44910150 (-)
G37492 NA other upstream 3213680 46365338 ~ 46393098 (-)

Expression


Co-expression Network