AMCG00019763 (LOC102782841,LOC107589980)


Basic Information

Item Value
gene id AMCG00019763
gene name LOC102782841,LOC107589980
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43369896 ~ 43399130 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019763
GTTTGGGAAAATTGGAAGTACAGTACGGtactgtgtatgttttgtttagtttttggtGTAAACTTTCATTTTCAGCGTTTATGTATCAGACGAAATGAAAGTGTAGTGGTGTTATTATGGAAAATAACAGTTCTGCGTTTTAGTCATTCCTTAACGCTGgctgtttaatataaaaataagttacaAGTTTGGAAAATTTTGGGCTGAAGACACTACTTTGCATGTAGTTTTGCgagtttgttttcaaatcacatgggaaagaaataaataattaggaGAAGAAATTCACCTTGTTTTTCTCTGAAATCAGTGCATGACTTGTGGGTGTATGTGGGATGTAAATGGATGTGAAACTAGTATGGAAAAGACAACGGGAGACGTTTCCCCAAATATCTGCATAACGGAGTAGCATGCACCTGAAGGGGAGTGTGGATTAGCAGAGTGGGATGGGTACGGCGTCCTCCCTCGTCAGCCCCGGGGAGGTGATTGAAGACGCCTACGGGGGTGAGGGCGGGGAGGCCTGCGAGATTCCCGTGGAGGTGAAGCCCAAAGCCCGGCTCCTGCGCAGCTCCTTCCGCCGGGGCCCGCGGGTGATCGGGGCGAGCTTCAAATCCACTGCCTCCGTAGACCTGGAGTACGCCGCAGAGTACGAGAGGCTGAAGAAGGAGTACGAGATCTTCCGCGTCAGCAAGAACAACGAGATCACCTCCATgcagaagaaggaggcgaagcTGGACAAGGAGAACAAGCGTTTGCGGGCAGAATTGCAGGCGCTGCAGAAGACCTACCAGAAGATActgagggagaaggagagtgCCCTGGAGGCCAAATATCAGGCCATGGAGAGAGCGGCCACCTTTGAGCACGACAGAGACAAAGTCAAGCGCCAGTTTAAAATATTCCGGGAGACGAAGGAGAAGGAGATCCAGGACTTGCTGAGAGCCAAGCGCGACCTGGAGGCCAAGCTGCAGTGTCTGCAGGCTCAGGGGATCCAAGTGTACGACCCGGCCGACTCTGACTCGGATGACAACCACACAGACGCCAACGCCACAGGCCCTCAGTGTGAGTACTGGAGTGGGGGAGTGCTCGGGAGTGAGCCCTCTATGGGCAGTATGATGCAACTGCAGCAGACGTTCAGAGGCCCCGAATTTGCGCACAGCTTGATTGACATAGAGGGTCCTTTTGCCAATGTCAGCAGAGaTGATTGGGACGTGGCTGTGGCCAGTCTGCTGCAGGTCTCTCCGCACTTTTCCCAGTCTCTCCTCAGTTTCCCGGAGGAGAGCTCCAGCTGTTACACCGCTGAGCGGAGACAGGAAGTGGACAAAAgctccctgtgtgtgttgtttctcaAGTCCTCCGTCACCAGTTCCATGATGGAGGATGTTGAAGAGGCCTTCCTGAAGAATCCCGAGGCTCGCCCCTTTCTGGTTTACTGCCGCAGTGTGGGGGGGGAGCCTCCCTCGGGAGCAGCGGCAGACCTGATGGAAAAAATCACTGCAGCAGATAAGGCTGGCAAAGTGAAGGTTATAGATCACAGCGGGGACCCAGAGGATGGGGCCTGTAAAATATTTACCCAGCTGGAGAATCTCATCAAACAGGAGCTACTGGGTTGTGAGGGCCGGGAGGCTGGGACGGCGGAGGACCAGGAGCAGGAGGACTCAGGGGATGTCCTGTGGGACACGCAACACGAACAAGGGCAGGAAGACTCGGGGGACATCCTGTGGGACATGCACGACGAGCAGGAGCAAATCGAGGCTTTCCAGCAGGCCTCCGGCTCGGCCTGCCAGCTGGGATTTCAGAAGGGAGGACAGGAGCCGACGCCCTGTGGTTCTGACCCCGTGTTTTCTCCACAGTACATGGAGAGACTGAATGACATGGTGGCAGCACCCCCACCCATCCCACCGCTCCTGGTGTCAGGAGGACCTGGATCAGGCAAATCTCTCCTCTTATCCAAATGGCCCTTGTCTACCAGCTCGGAGCCTGTGCTGCTGATTAAACGGCTGACAGTGAAGCAAGTGGAAAGACACATGAAGTGGCTGATCGATCCATTGCCTGTCAACGTGAGGGTGATCGTGTCTGTCAACGTGGAGACCTGCCCACAGGCTTGGAGGCTGTGGCCCACACTCCACCTTGACCCTCTGTACCCCAGGGATGTGAAGGCTGTGATCGCCGCAGAGTGCCAGAGTGTCGGCATCAAACTTACCAAGGAGCAGGAAAAGAAGCTCGAAAGACACTGTCGCTCTGCCTCAACATGCAATGCCTTGTACGTCACTTTACTGGCCAAGATGATAGCCAAACTGCTGCACGACTCCCTAAGCACAGAGACCGACCAGCACATCCTGAGAGAGGTGGTGTGTCTGGTGTGTGTGAGCCACAATGGGGTGAGTGAGTCCGAGCTGCTGCAGCTCCTTCCTGGCCTGGACTGGCCGGTGCTGGCTGCTCTCCTGCACCGACTGCAGGACCTGTGTGCCGTGACCTTCGGTTGTGGGCTGGTCAAGTTTCGGCATCTCCAGGCCTGGGAGGCAGTGAGGCTTGAGTACATCGATGGTGAGCTTGGTTCATCTGTGCACCGAGAGAAACTCATCCACTACTTCAGCCAGCAGCTTAGTCAGGACAGAGTGACCTGGAGGGTGGCGGATGAGCTGCCGTGGCTGCTCGAGCAACAGGAAGAGAAGGCCAAGCTGCACAAGAGTCTGCTGAACCTCTTCGTCTCCCAGAATCTTTACAAAAGGGGACATTTCTCAGAGCTGCTGGCCTACTGGCAGTATGTGGGCAAGGACAAGAGCTCCATGGCGAGTGAGTACTTCGCCTCCCTGAAGGAGTACGGGAAGAGCTGCGAGAGCCAGGACAGCATGACCCGCCTGGCCAGCCTGTACGAGACGCTAGGGAGGTTCCTCAAGGACCTGGGCCTACTCAGCCAGAATGTCCAGCACATCCTTTCAGCTGCCCTGTTCCCTTACTCGGCTGTGGCTCCCCTGCAGCGATCCCTGGAGATCCGGGAGACGGCGCTGGATCCCGACCACCCCAGCGTGGCCCAGTCCCTGCACCAGCTGGCCGGTGTGTACGTGCAGTGGAAGAAGTTCGGCAATGCGGAGCAGCTGTACAAGCAGGCCCTGGAGATCAGCGAGAATGCCTACGGCCCCGAGCACCCCCGGGTGGCGCGGGAACTGGACTCCCTGGCCATGCTTTAccagaaacaaaataaAGCGGCCAAAGTGTTCCTCACACGCTCCCTGGAGATGAGGCAGCGCGTGCTGGGGCCCGAGCACCCCGACTGCGCCCAGTCCCTCAACAACCTGGCGGCCCTGCACTCCGAGCGCAGGGAGTACGAGCTGGCGGAGGAGCTGTACGAGAGTGCGCTGGACATCCGCAGGAGAGCGCTGTCGCCAGACCACCCGTCCCTGGCCTACACCGTCAAGCACCTGGCCATGCTGTACAAGAGGAGGGGAAGGCTGGAGAAGGCGGTGCCTCTGTATGAGCTGGCTGTGGAGATCAGGGAGAAGTCTTTCGGACCGAAACACCCCAGTGTGGCAACTGCTTTGGTCAACCTGGCTGTTTTATACTGCCAGCTGAAGCAGCACGGAAAAGCACTGCCCATGTATGAGCGGGCGCTGAAGGTCTACGAGGACAGTCTGGGCCGCTCTCACCCTCGGGTGGGGGAGACGCTGAAGAACCTGGCTGTGCTGAGcTACGAGGAGGGGGATTTTGAAAAGGCAGCGGAGCTGTACAAGAGAGCCATGGAGATCCGGGAGACAGAGCCCTCGCTGGTGTGTGGGAAGGCACCGTCCAGACATTCGTCTAGTGGGGACACCTTCAGCCTGAAGAACACGCTGCCCAGCCCTCACCTGGACCTGGGGCACAGGTGACCTCCACTGCCACACTGTGGTCAGGGTGGGTCTGTACGGCTCGGCTTCAAGTGCTAAAGCTCCCATGGCTGCCTTATTGGGAGCGCAGAAGTCTTCGCACTTCCTTGTTCGTCGATCGTAGCTTTTTGTGGAGGATCTTGCTCTGGTGCAAGGCTGAACAGCTGCGAATACGCCAAAGAGTCTGCCTGGAGCGGCCAGGCCAGGCCAGTCCCGGGCCAAATAAGACAGCCTGACTTTCTTAGTCTGCCAGGTAGAGTTataggttgttgtttttttgctttttaagatAGATGCATTGGCATATTTATCAATTCTGCCACCCCGGAACACATTttgccaaaactacactggccATAAAGCAAGCAGGCAGATTTTTTCAGTTGGATAGCCATACAATCTGCTGTAAGGAACTCGGGATTGTTGGGGGACTGGATTGAGGCCAGGGGCCGACTCTGAAAGGACATTTCAATATAGATCACAGCTTTTATGGCCCGCTTGTTGCATATCTGTTGTGTATGAAAAGAGTGCTGGGGGCACTTATCTAGACAAGGGTGAGAGTGGGTTGTGGTGTTTTTGGGAATTCATGCTCCGTGGTCCCAGTCTTTACAGTAACACTTTTCCCCATTTAAACAGACCTGCCCTCATAATTATACATCCGTTACATCCGGTGCACAAACAACGGTATTGCAAGTGGAAGATCAGTAATGGGAGAACAGTCGACTGCATTTATGTTAATAAGAGgatctgatttttttaattaatattatattcaaaCACTCCAGAAAAGTCGCACATTCTTTTATAGtcttttgttattaaaaatcgAA

Function

NR:

description
PREDICTED: nephrocystin-3-like, partial

GO: NA

KEGG:

id description
K19360 NPHP3; nephrocystin-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019763 True 4693 mRNA 0.55 26 43369896 43399130

Neighbor

gene id symbol gene type direction distance location
AMCG00019760 acad11 coding downstream 87091 43274030 ~ 43282805 (-)
AMCG00019757 myrip coding downstream 218238 43018109 ~ 43151658 (-)
AMCG00019756 NA coding downstream 393558 42975368 ~ 42976338 (-)
AMCG00019754 NA coding downstream 654286 42695829 ~ 42715610 (-)
AMCG00019752 afg3l2,LOC107589831,LOC107689395 coding downstream 789512 42561569 ~ 42580384 (-)
AMCG00019765 NA coding upstream 157769 43556899 ~ 43563516 (-)
AMCG00019769 NA coding upstream 405030 43804160 ~ 43809705 (-)
AMCG00019771 nrn1,LOC106590090,LOC106578581,LOC107713755 coding upstream 475795 43874925 ~ 43877635 (-)
AMCG00019772 NA coding upstream 483418 43882548 ~ 43929432 (-)
AMCG00019774 ssr1 coding upstream 647557 44046687 ~ 44056603 (-)
G36977 NA non-coding downstream 66836 43266893 ~ 43303060 (-)
G36907 NA non-coding downstream 427397 42942242 ~ 42942499 (-)
G36894 NA non-coding downstream 521210 42848457 ~ 42848686 (-)
G36882 NA non-coding downstream 607162 42762531 ~ 42762734 (-)
G36841 NA non-coding downstream 787423 42582143 ~ 42582473 (-)
G37022 NA non-coding upstream 127277 43526407 ~ 43555509 (-)
G37021 NA non-coding upstream 156613 43555743 ~ 43556744 (-)
G37048 NA non-coding upstream 423204 43822334 ~ 43822820 (-)
G37171 NA non-coding upstream 1010087 44409217 ~ 44410259 (-)
G37174 NA non-coding upstream 1037790 44436920 ~ 44443701 (-)
G36982 NA other downstream 8990 43298231 ~ 43360906 (-)
AMCG00019761 NA other downstream 27190 43330289 ~ 43342706 (-)
G36862 NA other downstream 713503 42644324 ~ 42656393 (-)
G36817 NA other downstream 825372 42544116 ~ 42544524 (-)
AMCG00019741 NA other downstream 1290964 42071062 ~ 42078932 (-)
AMCG00019768 NA other upstream 178179 43577309 ~ 43713777 (-)
AMCG00019799 NA other upstream 1497369 44896499 ~ 44910150 (-)
G37492 NA other upstream 2966208 46365338 ~ 46393098 (-)
AMCG00019824 NA other upstream 4493073 47892203 ~ 47901933 (-)
G37806 LOC100846954,LOC107575789 other upstream 5123538 48522668 ~ 48523702 (-)

Expression


Co-expression Network