AMCG00019768


Basic Information

Item Value
gene id AMCG00019768
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43577309 ~ 43713777 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019768
ATGTGGCACCTCTTGCACcacagcagcctctggcaattCTGCCGGGGCTTCGGAAAGCAACAGAAAGAAGCTGAAGCTGATAACAGTGGCTGTGCCGACACATTTAAGCCTGTCCGGCCCACACTGACCGGTCCCCGAGTATCAGAGATAGCAGCAGGACAGAGCTATAGTGTACCCACCTGTCCCAAACAGCTGAGTGATGAGTTTGCGGACAGTCTGTTTGAGGTTGAACTCCACCAGCTTGACGGCCTCGAGCGTGTGGGTCTCCTGCTTCTCCGGGGTGCGGGGGCCCCTCTCGAACAGACGCAGCTCCCCTCCGTTCACAACGCTGGCAAACAGCTGGCAACCAGACAAGAGCAGAGGCAAGGGGGTCCCAAAGCGCCCTGTGTACTGCTGGTAGAAGTGGGCTTTGATGCGCTCCTTGATGAGCCACAACGGGTGGTGCTGCCGATTGTGAAGGTCCTTGCCCACCTTGGACAGGATTTTGGGCGTCACGTTGGTGTAGTCATCCCGCTGGTGGATTGTCCCGAACAGCTCCGCGCATTCCTGGCCGCTGGAGCTGGGGGCAGGCCCCGACGTCACCCTTCTGTGGGCAGCCTGGGTGGGAGCTTCCCATCGGCCTCTGCGGAGCGCCGTGGCCTGAACCAGCCGGGCGATTGGCCCCACACCACCATACAGCCTCATAACCACACACCCATGCACCTAGAGAAGGAGAGCACAGAGAAAGGAGAACCGGACTGCAAGCGCGTCAGAGAAGGCTTCAGTGGCATGCGTGGGCCCGGGAGATCAGGTTCCCCAAACCAGGCAGACAGACCTCTGCTCTGTGACGGGCTGTGCTGCTCTGCAAACAAAGGAGCGGGCCATGTTGCCGCTGCAGTGACACCGCTGCAGCAAAACACCTGCAAGGTAACACACAGGGCATCAGGTGTCATTAGCCACAAGTCTGTCCACACAGGAGAAATGCCACTGATCTCGAGTGAGCTGGCTCGCTTCCGACTTTCGTCCAGGGACGGCGCGGCGCTGGAAGGAGTGAAAACCTTCCATTCATCAAAAAGCTACATCTCTGAGATACAGCCAGACATTTTATCTCCCAAAGGATACGATAAGATGCAGACCTCGCAGGTGATTTGCCCAGCTCTTGAGTCCTGTCAGGTTATTAAAGCATTTGACAGCCACACCATTCAGAAGAGGAggcagggggagagggaggcatGGGGgACTTACGCCCTCCGGAGAGTGAGAGACAGCTTCAAAGAaaacggagcaatggaagatcCCAAAGCCATTGAGGAGCTACTAAACAAAGGCAGGGAGAGTCTGGCAGTCATACGGAGGCAGATGTTGTCCCAGGTAGCTGAGATTCATGGGATACGAACGCAGTGCATTTGTGGCGCCAAGGtgccatcccccccccccacccgagACTCGCACCCCAGCCTatcacGTATTTGCTATGAGCAAAATTTTGAAAATCAGCTGAATTTCTGCAAAAAAGACGCAGAAACATTAGGTTCTCTTTGTGGAGTACTTGTGGAGCCCAACATCCAGTCCGCAAGGTTTTTCAGAGCACCTCCAACTCCATCTGGGGCTCCTGTACCATGTGATGCCTCAGTGAAGTTCCATGTGACTGATGTGAAACCTTTCAGGAAAGGGAACGGAGGCAAGGTGTCCATCGGCCACTTGTACTCGGCCCAGAAGATCGTGGTGGAGGATCGTGGGGGGCAGAAAGCCTTCTGA
>TU46276
ACGGAGCTTTATTTGCAAGATGGCTGCCTCCAGCAGATCTCAGGTGCTTTCACTTTATCGACTTTTGATTAAAGAGAGCAAGAAATTCCCCTCTTACAACTACAGgACTTACGCCCTCCGGAGAGTGAGAGACAGCTTCAAAGAaaacggagcaatggaagatcCCAAAGCCATTGAGGAGCTACTAAACAAAGGCAGGGAGAGTCTGGCAGTCATACGGAGGCAGGTGTCCATCGGCCACTTGTACTCGGCCCAGAAGATCGTGGTGGAGGATCGTGGGGGGCAGAAAGCCTTCTGAGGGGGAACGCTGGGTGGACAGGAGGAGCAGCATTGTTTCAATGAGACCTGGGAGGAACAGGTCCTTTTCCCTAGTCTGTCACAAAGCCAGCTGCATCTgacctgcagtgctgtgtgtagacCACAGGCCGCAgggcctttttttccccttttgttattattttgtgtgtgtgtgtatatatatatatgtgtgtgtatat
>TU46277
ACGGAGCTTTATTTGCAAGATGGCTGCCTCCAGCAGATCTCAGGTGCTTTCACTTTATCGACTTTTGATTAAAGAGAGCAAGAAATTCCCCTCTTACAACTACAGgACTTACGCCCTCCGGAGAGTGAGAGACAGCTTCAAAGAaaacggagcaatggaagatcCCAAAGCCATTGAGGAGCTACTAAACAAAGGCAGGGAGAGTCTGGCAGTCATACGGAGGCAGtacaCAGCAGAAAAGCTCTGATCCTGAAACGCAGGCTGATGTTTGATCAGAAAATGTCAAGAGAAGATTGAGATGATGCCAAGAGATTCCCTCTGAAATATCACTCGATTCTGAGTCTGGTATGCTTGTGTGTTAAGGCAAAATAGCAATCTCATTTTTCTCTCACTTTGTGGCAAATGTTAGCAGGAGTGGAACTGATAGGCTGTGGAGATCATCTTTTGGTGGCATGAAATCAGGAAAAGTTTTTTGCTCTATAGTACTTTTTATCAGTCAGGAAAGTCAGATAATTTTCAATAAGCAAAGCAGAACATCAGAGCTAAGTTCACAAGTCTTTTGAAATGTTCCCGGAGAGACTAGACAAAGACGAGTCATGCAAGAAATTGCATCCGAATTCGAAGTGCGGGACGAGTTACAGTTGGTGACAGGAAGAGGAAAAGCAGTGAGTTAgaaaaattgtacattttgccatactaaatgttgcatttaatcaatttaaaataaattgttcagttttattgatttgaaatttAATTCTTCAAATAATAGGTATTTCTGTACTCTATTATGTTAGTTGTACTGTagaataatgattaataaacc

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019768 True 1737 mRNA 0.56 12 43577508 43713777
TU46276 False 497 TUCP 0.49 3 43577309 43656444
TU46277 False 826 lncRNA 0.39 3 43612364 43656444

Neighbor

gene id symbol gene type direction distance location
AMCG00019765 NA coding downstream 13793 43556899 ~ 43563516 (-)
AMCG00019763 LOC102782841,LOC107589980 coding downstream 178179 43369896 ~ 43399130 (-)
AMCG00019760 acad11 coding downstream 294504 43274030 ~ 43282805 (-)
AMCG00019757 myrip coding downstream 425651 43018109 ~ 43151658 (-)
AMCG00019756 NA coding downstream 600971 42975368 ~ 42976338 (-)
AMCG00019769 NA coding upstream 90383 43804160 ~ 43809705 (-)
AMCG00019771 nrn1,LOC106590090,LOC106578581,LOC107713755 coding upstream 161148 43874925 ~ 43877635 (-)
AMCG00019772 NA coding upstream 168771 43882548 ~ 43929432 (-)
AMCG00019774 ssr1 coding upstream 332910 44046687 ~ 44056603 (-)
AMCG00019776 LOC108250945,LOC106903449 coding upstream 356917 44070694 ~ 44102691 (-)
G37021 NA non-coding downstream 20565 43555743 ~ 43556744 (-)
G37022 NA non-coding downstream 21800 43526407 ~ 43555509 (-)
G36977 NA non-coding downstream 274249 43266893 ~ 43303060 (-)
G36907 NA non-coding downstream 634810 42942242 ~ 42942499 (-)
G36894 NA non-coding downstream 728623 42848457 ~ 42848686 (-)
G37048 NA non-coding upstream 108557 43822334 ~ 43822820 (-)
G37171 NA non-coding upstream 695440 44409217 ~ 44410259 (-)
G37174 NA non-coding upstream 723143 44436920 ~ 44443701 (-)
G37232 NA non-coding upstream 1009997 44723774 ~ 44735394 (-)
G37290 NA non-coding upstream 1221746 44935523 ~ 44936756 (-)
G36982 NA other downstream 216403 43298231 ~ 43360906 (-)
AMCG00019761 NA other downstream 234603 43330289 ~ 43342706 (-)
G36862 NA other downstream 920916 42644324 ~ 42656393 (-)
G36817 NA other downstream 1032785 42544116 ~ 42544524 (-)
AMCG00019741 NA other downstream 1498377 42071062 ~ 42078932 (-)
AMCG00019799 NA other upstream 1182722 44896499 ~ 44910150 (-)
G37492 NA other upstream 2651561 46365338 ~ 46393098 (-)
AMCG00019824 NA other upstream 4178426 47892203 ~ 47901933 (-)
G37806 LOC100846954,LOC107575789 other upstream 4808891 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 6882419 50596196 ~ 50698163 (-)

Expression


Co-expression Network