AMCG00019774 (ssr1)


Basic Information

Item Value
gene id AMCG00019774
gene name ssr1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44046687 ~ 44056603 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019774
CGAAAAAGGGCTGCACAATACCCGGATGAGCAGCATACGCCATTATTACCAAGCTGAAGAAACGCGGGGTCAGGGAGACGAAGAGAGTGAGATCTGATCGGGAACCGTGTATTAAGTCTTGGGGGAAAATGATGAATTTTCTGCCGAAATTACTCCTGATCGCCTTGTTGGCGTTTCCCGCGACGATCCTCCTCAATGGCAGAGGCCCTCTCGTGGCAGCGCAAGATGCAACAGAGGATGAAGAGGCAGCGGATGATGTGATCGCAGAGGATGAAGATGACGAAGCTGAAGTGGAAGACGATGAAACGACAGAGTTGACGGAAGaaaaagatgaagaagaagaggatGTAACCTCAGGGGAAGCAAAAGCCTCCCCCAACGCTGATACCACCATCCTCTTTGTGAAAGGAGAGGGTAAGTCCAGAACAACGATGCCCAGCCCTGGGGACCTTGCTGCCAAAGGTACTTTCACCAAATATTTGAGttgaggggtctgaatacttctgctgttaacatttcattttttgtctttagtttttgctgacatTGACTTATCTTACCCTCTTTTAgcaaaactgcattttgtaaCTGGGGAAACCATTCAATgtgtctgaatacttttgcaagtgtgtgtgtgtaatgtgtatgcatatgtgAAGCATAAGCTATTGTAGTTTGAGCAGGAGCAGCTTGTGTGTTGAATATTTTGAGCACTGGAAAAAGGCTAAACTTCACAATGCTGATTAGTCTCCAGCCTTCCCTGTCTTAATGCTCATGAATTTATAAATCCTGTATGCCTGCTTCCTGTCCCTGTAGTGGTGTTTAATGTCTTCAATGTTGCAAGCTTTTGAACTCTTGAGTTCATCTGCAAAGACTTTCACCACGGAGACTAATcgggatttgtttttgtatgcgTCTCTCCACCCCtcattgtttttcaatacatCGCTGCTTTTCAACAGATTTCCCCGCCAACAACATTGTGAAGTTCCTGGTTGGTTTCACCAACAAGGGCAGCGAGGAATTTGTGGTGGAATCCTTGGATGCCTCATTCCGCTATCCCCAGGACTATCAGTTTTACATCCAGAACTTCACGGCCCTGCAGCTGAACACGGTGGTCCCGCCCCTGCGCCAGGCCACCTTCGAGTACTCCTTCATCCCCGCTGAGCCAATGGGCGGCCGGCCCTTCGGTCTTGTGATCAACCTCAACTACAAGGACAACAATGGCAATTCGTTCCAAGATGCTGTGTTCAACCAGACCGTGACCATAACCGAGAGGGAGGACGGCCTGGATGGTGAAACGATCTTCATGTACGTCTTTCTGTCTGGTCTGGGACTGCTGGTGGCTGTTGGTCTGCACCAGCTCCTCGAGTCTAGAAAGAGACGGAGGCCAGCGCCCAAGGTGGAGATGGGTACCTCCAGCCACAATGATGTGGACATGAGCTGGATCCCTCAAGAGACTCTCAACCAGATCATGCAAAGCAGAAGAGGAAGAGGACAAGGCCTCCCCGAGAAGATCGCCCCGCAAGAGAGCACAGAAGCGGTCGGCCGGGTCGGACGAGTAGTGGCAGGCGTGGCGACGAATGCAGCTCATCCGTCATCAGTCCTGTCCATCGCGTGTGACACCGCCAGTAGGGCGACCGAGCCACACCAGCACGTCCATGGGAAAAACGGGGAAaaacggggggaaaaaaaaacatagcagAGCTGGCTTATtctagtaataaatacaaaaataattgtggCTAGCCTGCAGCAAACTTGGAGGAAAGTAATAACCTCCAACTTATTTTACTCTTCAATTCAATCCCTTTTGATTTTTAAACCTAGCTTTAACTCTAGTCTTAATCCAGAGAGCTCTTTGTGGCCGGTCTTCACAAGTGGCAGATGGAGCACTGTCCATgatgggaggagggagagaggtggaaacctttttttttttttttttttttttttttcccctcttttcaAATCTGAagttgccttttttgtttttgttctttttccttttaaagggTCCTTGAGAATCATGATTGTAGTGCATCTGGAAGAGCCCTGTACTTGTGCTTATGGTGTCTTGCACTGCTGTCTGTTAAACTGAGTTACTCCCAGCTGTAACTGGGGGGGTATGTCTGTTTACTGCATATAGTTTTCATTGAGGCAGTGTTGGCAGCAGACTGGTACAATTGTCCCCTCCCCCGCCACACTGCCAAAACTGCTCTTAAGTGCACTGAAATAAAGCAGCGGAGATGCTGTTTTTCAGACTTTGACATATAGGCCAACGTCgaaagatttttaaattaatctggattttgtttttcttctctttaaaatgtgccagttttttgtttttgttttggtctgtcttctgtcttcagttttgtatatttgtggTGCTGCTTTATATGGTTTACTAGAATTTTGACACTCGTCATTTTTCTTGAATTTTTAAGAAGCACTGACTTGGATAAGTACTACAGACTTACAACCACAACACAGACTTAAATGATTGGCCCTCTTTGAGCTTCTTAGCATCTACTGTGACCTGCTGCCAGAAGCAATGTTTTTGATACTATAAATCACTATAATTTGTCATTGCAGAAATGGAGAGCTTCAAAtgccatttcaaatatatatacatttgctaAGGTAGATGTCTTTTTCATCAAGGGGTCTTTTATGTAAAAACCTAAAGTGCATGCTCAGTCAGTAGCTACACTAATGTTCCTTGTGTTTACATGTGGTTTAATAAGGCATGACGAGAGATCCTGTCCTGGTTTATTTAAGGTGGTTTggttacagtttaaaatatttttcggTTATGTTTCAATAAAAATTTTAACCAAAATCAAAAATTCCAAAGCGGGAATTGTTTGATCGAAACACTGTAGCATTGCAATGCAATCCCGCCTTAAGTCACAGCACGTCTACTGTCATGATATTTTTATCCTGCATCTAAACGCCGCCACTGTGATCCAAGAATCGCATCCATCTACCATCTGACATTTCAGGCCACAAGGCAGCAAGTTTGAGCCAGCGTAATGACAACCACAAAAACCATTGCAAGTTAACGAATCCTTTAACGGTGCTAGAAAGAAGAGTTTAGTAAACTCTGCACCGGATGCAGTGCGTGTTTCAAAATGTCTTCACGGGAGTTACAAAGTGATGACTGCAATATCTCAGTCGAGGGAGAAGCTCTACAGCAACTATTTTTAACTTGTTAACATATCAGCTTTTTTATAGATTGCAACAAAGAGGAAATCGGTGCTTGCTGGTGAGTGCACTGGTACAAAAGCAATGCTGATTTGTGGGAGTCATTATATGGTCTCATCCGCAATGGATAACTTGTCTGCTTACAAAGGTCTAACAGGTGGCATCTGAAGTTACCGTCTGAGTACTTGCTCTTTTTCCTCATGGTTTTTAACCACTGAACACATTTTACTGGCTTTgcaaaaaacagttttgttcCCCAGCCTCAAATAACTGCAACAAAGTGAAtccctgtcttgcaggaaaagGAAAACTGGACTTTTTTTGCCCTGAATATTGTACAGTCTGATTTTTGaaattttgtacttttgtttttgtttggtttaggtGGTTTGATTTTGAATGGGAAAAGTAAAGattaaatttaacttttttttttctcccacttCTTCTTgtggtttcttttctttgagtaaaaaggtttttaaaatttcaaataaaatgaactgcTTATCCAGCTTTATAAGCCGCATCAAGGCATTGACTTGAATTGAATTTTTCCAAATTGAgtctttggatttgtttttgggAGTTAGAAGGACTGCCTTTTATACTCTGAGTCCCTTGTATTTGTTGGAGAGATGTAAACTGTTTCAGTTCTGCACTCATGTATGCTTTTCAGTATAGTGTCTGGCTGTGTTTCTTTCAGGAAAagcaataatgaaaaaaatagaaactaggggggtgggggtataAGAACCTTATTATGCAGTCTTGGTTAAAtgacttaatttaaattttctGCTACAtgtatcaaatgaaaaaaatgcaaa

Function

symbol description
ssr1 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; fin; hatching gland; periderm; and polster. Orthologous to human SSR1 (signal sequence receptor subunit 1).

NR:

description
PREDICTED: translocon-associated protein subunit alpha isoform X1

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K13249 SSR1; translocon-associated protein subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019774 True 4043 mRNA 0.43 9 44046687 44056603

Neighbor

gene id symbol gene type direction distance location
AMCG00019772 NA coding downstream 117255 43882548 ~ 43929432 (-)
AMCG00019771 nrn1,LOC106590090,LOC106578581,LOC107713755 coding downstream 169052 43874925 ~ 43877635 (-)
AMCG00019769 NA coding downstream 236982 43804160 ~ 43809705 (-)
AMCG00019765 NA coding downstream 483171 43556899 ~ 43563516 (-)
AMCG00019763 LOC102782841,LOC107589980 coding downstream 647557 43369896 ~ 43399130 (-)
AMCG00019776 LOC108250945,LOC106903449 coding upstream 14091 44070694 ~ 44102691 (-)
AMCG00019777 NA coding upstream 47893 44104496 ~ 44112240 (-)
AMCG00019778 NA coding upstream 128929 44185532 ~ 44189156 (-)
AMCG00019779 skida1 coding upstream 182887 44239490 ~ 44241946 (-)
AMCG00019783 NA coding upstream 281909 44338512 ~ 44340800 (-)
G37048 NA non-coding downstream 223867 43822334 ~ 43822820 (-)
G37021 NA non-coding downstream 489943 43555743 ~ 43556744 (-)
G37022 NA non-coding downstream 491178 43526407 ~ 43555509 (-)
G36977 NA non-coding downstream 743627 43266893 ~ 43303060 (-)
G36907 NA non-coding downstream 1104188 42942242 ~ 42942499 (-)
G37171 NA non-coding upstream 352614 44409217 ~ 44410259 (-)
G37174 NA non-coding upstream 380317 44436920 ~ 44443701 (-)
G37232 NA non-coding upstream 667171 44723774 ~ 44735394 (-)
G37290 NA non-coding upstream 878920 44935523 ~ 44936756 (-)
G37367 NA non-coding upstream 1207479 45264082 ~ 45264334 (-)
AMCG00019768 NA other downstream 332910 43577309 ~ 43713777 (-)
G36982 NA other downstream 685781 43298231 ~ 43360906 (-)
AMCG00019761 NA other downstream 703981 43330289 ~ 43342706 (-)
G36862 NA other downstream 1390294 42644324 ~ 42656393 (-)
G36817 NA other downstream 1502163 42544116 ~ 42544524 (-)
AMCG00019799 NA other upstream 839896 44896499 ~ 44910150 (-)
G37492 NA other upstream 2308735 46365338 ~ 46393098 (-)
AMCG00019824 NA other upstream 3835600 47892203 ~ 47901933 (-)
G37806 LOC100846954,LOC107575789 other upstream 4466065 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 6539593 50596196 ~ 50698163 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023732 ssr1 coding NC_007135.7 CM002908.2 42081728 ~ 42090635 (-)