AMCG00019776 (LOC108250945,LOC106903449)


Basic Information

Item Value
gene id AMCG00019776
gene name LOC108250945,LOC106903449
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44070694 ~ 44102691 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019776
ATGTCCATGCTGCAGCCTCACTTCCCTGTGTATCCTGATGCACTGCTTGGCTTTGTCTGTAACATCGATTTCTCCTGGCAACAGGTGAGATACAAAGAGAAGTTTGAGAGGGACCTGAAGGAGAAGAGACACCAGTATAACCCTGGGGATAGCGCCACCTTCCAGCAGGCACAAGTAGCTTCGATCTTGGCCAGTCAGgTGAAATATAAAAGCGATCTGCAGCAGATGCATGAGCCCTCCTCAGACTTGCCAAATCTTCTTCATCTGGAGCACACGCTGCATGCCAGCAAGCTGCAGAGCACGATCGAATACAAGAAGTTGTATGAGAAATCCAAGGGTCATTACCATATGGCTCTGGATACAGCCGAGCAGATCCATCACCGAGAGAGCGCCGTGCTGCAGAGCCAGGTCAAATACAAAGAAGACTATGAGAAATCGAAAGGGAAATCGCTGCTGGAGTTCTTGGACACCCAGACTTATCAAGTTTCAAAGGACGCACAAAGAAATCAGAGTGAGAAAGCATACAGGAAGGAGTATGATGACACTATGAAAGGCAGGGCTGCCGTAGATCTGGATCTGGCCCCAGCGTTTCTGCACGCGCAACACGCCAGCAGCCTGCTGAGCCAGGATGATAGCTTTGGCTGCGTGGCTTTAGCAAGGAGAACTGACGGGGCAATGCTTGTGTTCCAGAAAGCGTACAGGAAGGACCTGGAGACGGAGATAAAAGGAAAAGGCATGGAAGTCAGCACAGAGCTTCCTGACATCCAGAGAGCCAAGAGAGCCTCACAGATGGCCAGTCAGaaggAATACAGGAAGGATCTGGAGACTGAAATCAAAGGCAAAGGAATGGACCTGAGTACCGAGGTCCTGGAGATGCAGAGAGCGAAGAGAGCGTCTGAGATCAGCAGCCAGGCATCCTATAAGCAAGAGCTAGGGGAGAACACATACGGCACAGTGACGGACACCCCGGAGATGCTGCATGCTGCATACGTGAAGGATATGTACAGCCAGaaaaaatataaagacgAGGCGGAGAGACTGAAAGGCACCTATGCCACGGTTGCAGATACTCCTGAAATGCAAAGAGTGAAGACCAGCCAGAAGAACGTGAGCTCGTTGCAGTACACTTCGGACTCGAAATTACTCCGTGGCACGGTGTCCTCAGTGGCAGAAACGCCAGAAATTCTCCTCGCCAAGGAAAACACTAGAAGGATCAGCAATGTGTTCTACAAGGATGGAGTAGGTTCTGGGACGGCGGTGAAGGACACGCCGGAGATGGAAAGAGTGCGCCGAAACCAGCAGAACGTCAGCATGGTGAGTGACGGGGACCTCTGTGTGTCTCTTAGGAGGACGCGTCCAGTCGGGACAAGACTGGTCATTTATTTCCTAGGCTTTATTTCACATCTCTCGTCTGTCCTGCTTGGGCATGGTGTGTTTGTATCGGCACACACAGCGAGCAGCTTCACCCGCTGCATTGGCCACGCAACGGCCATCCCAGACCCTCCGGAGCTGAAGCGTGTCAAAGACAACCAGAAGATCCTCAGTAACGTGAACTATAAAGAGCAAGTGGGCAAGGCGACAGCTGTGGGAATGACTCCGGAGATGGAGAGAGCCAGGAGGAACCAGGATAATATCAGCCTGGCAAGTTTCCACCCCACTGATGGAGTGAAGTACCACAGCGACCTGCGGGAGATGAGGGGGAAGGCGTGTGCTGCGTTTGACACGCCAGAGCTGAGGCGTGTCAAAAAGACCCAGAGCGACGTGTCTATGGCCAAGTACCATGAGGACTTTGACAAGACAAGAGGCCGAGGTTTCACCCCCGGGATGGACGACCCACACATGGACAGACTGCGCAGGAACCACCAGGTGGCCAGCGAAATGGCTTACAAAGGTGTGCACCCACACGTGGTAGAGATGGACAGAAGACCAGGCATCATTGTGGAGAAAGCAAACTGCGTTAGTAGTTCAAGGTCTCAGTCTGTAAGCACAGTGGGCGACACCAGGTCTGAGGTGTCGGATAAGCTCCCGAATCTCTCCTGCTACAGCTCCAGCTCGGCCAGGACCTCCGTGGACAGAGCCCCAGTGCTGCCAGGAGCCTACCACCCCGGCGGGCACCCCCAGGGCTACGGATACATGCACCAGACCAGCATGTCCTCCATGAAGTCTGTGCAGTCCCCCCCACACTCTGCCAGCATGCAGAGAGCATACAGAGCCATCTATGACTACGCTGCCCAGGACCATGATGAGGTGTCCTTCAGAGACGGCGACGTCATCATTAACGTGCAGCCCATCGACGAGGGCTGGATGTACGGCACTGTGCAGAGGACTGGTAAATCCGGGATGCTTCCGGCCAACTACATTGAGACGTTCAACTAAAGGTGTAGAGATCATACTGtgctttgcctttttttttttttttttttttaactagacGACATTGCTAACATTTTAAGAGGCAGGATGAGTGTAAAGGATATTATGACTACTCAGTACTATACTGTATAAACTTTCTGTTCCCTGTCATCTCTTAACGCACTGCTTCATTTTACATCTCATTACGGGACGCAAAGGGTTTTGTAAACTCACCAAATGAACTGAAGTGGGTTTGAGTCGCAGCACAATTGGTTCAGATTAATTCTGCTTTCGTTGGTCTTTAACTTGTAACAGTATGGGGGAGGTAGATCTCAGTCTGCAGGAGCTGCACCGCTGCTGCAGGTTGCCACACAATGTGAAGACGGCTAGATGAACTGAAGCACTGGGCCTGTCGGTCATTGACAACCCAGAGCACATCGTATATTAGGGtctgaaaaaataagtacaaaaaCAGACATCTGCAAAATTacctaataataacaactaccCTTCTGGCTGTCCAAAGCTTGGATGCtcaaactttttaaaaacactctGGAAAATTCCTCAGTGCTATTGTCAGTGTCCTGCCCAGTCAATGCCCACATCTGAGAGATTGCCACTCCCAGTTCCCAGATGGGTAATTCCAATTTTATGTAAGTAAAGTAATGCCCGAGGGAGGATTGCGTGGCTCTGTGTTAATTGTCATCATGCCACAGTGTCAAATTAGAGCAAGCATTGAATAGTCCAGACAACAGCATCCTCCTTTAAAGCAGTGATCATGGAAGACTTTTCTGAATTtctgcatgtatttgttttaattacacattaagtCTAATAAAGGAATGCAACCTGATATTGATAGTGAAGAGAAGCTCTTAATTTCCCCATTTCCAACACCAGATTGGCTTTGTTAATGTCCTGTCTGTAGTGAAGCCGTGGGAATGCGTCTCCCCACTGCAGTGAGGACCATCAGAGTCGACGCCCTGTCCCGGCAGCAGCTCTTTCACTCTGTGGGCTTTGACTTAGCACAATCTGGTATTTGCACCTCTTGGCTCATGTGGTGTGTGATGTGATGTGTCGGAGGTCATTGATTTAAAATTTAGGAAAACAATTATTGTAGATAAGTTTCAGTTCGAATATATTTGTCAGGTCGGAACCAGAAGACCAGGGGTTCCTGTGGTCATGTACCAGGTTTTACGGCCCTTTGCAGCCTGTGGCCCTGAGCAGCTCTCGTGGGCCCCTCGGGGCTCTTTCGTGTGAGATGTTAACTGACTCGGTGCACTTCAGCGGCAGCCCCCAGCTTCAAGCAGTTCGGTAATCAAAGCCGTTATGGAGAAGAACATCTTGTAACGTACTTGCAGGAAGGAAGTGACACGCCGTGTGTTCCGGTGGTGCCACACAAGAGTCCCCTGTGGTATGGAAACACAGAGGCTTCTGCTCAGTTCTCTGTGGTCACTGGCAGGCCCACGGTTAGCTAACCTCTACATAGCACTCTGGGCTGTGActactgtaagtcaccctgggtaagagTATCAgctatattaataaattaattacttaataattaattaaaaacatgacctGGTACCCTGTAATGATATGCTGATTGATAACACCCCAAGGTTTCATTAATCAAACGGCGCGTTTAAGACTAGTTATTGTGTTACAATGTGTCAGTCATATAATCACCACCAGTGTGACGTAGACGACTTCACCGTTTACAAAACTTTTGTGTCTTTgactgttttcttttacatgtaGTCAAAACTGATATAATAAGTCTGCTGTTCATGTTTTTAGAACATAACCACTGGTaatcatttgtttaaataatgaaattaaataaaaaagacttgATTGTTTGtcaatatttgattttttttgttgttattaattgCAGTGTGACAcgtggagaaaataaacagctttGCCAACCCGGGCTTGTATTTGTTCAGATACATAttcttattttactgtaaaaaaaattaaatgtatttttttgtcaatgGAATACATTCGCTGTTCAGCTTTCAAATGCAAACCAATtccattaatttccttttcttttcttccatctTGCACACGTGTGTTCAGAAGTGAAAGATGCTGTAGCTGCATTACATAGCTTGCCCTCCGTGTAGACCGAGGGTTCCTGCTGCAGTTGTAAGCTCAGCAAGAGACTGAAGCACAGCCATTTGTGAGGCAAGCGCAGAGCCGGCTGCACTGTTGAGAGTTGCTACTTGAAGGAGCCCAATGCTTCCATTAATTCTAAATCAAtggaatattaatttaaatgtctaaaATGAGGTGATAAATTGAATCTGAAGAACTGGAAAGTAACGCAGTGGCCCTCAAGTCATCATACTCTGCCATCACTTGCTATTATGcagatttaatgtatttattttggggggggggggagtgaggTTGCATGTGTAATCACAGAAGATAAAAGTCATTAGAGAGGTGTGAGGTATTGAGggagcaacaaaacaaaaatgtaaagtggTGCTAGAGAGCATACAGACACATACGTTCTcactcacccccccccctcactgtTCACACCATCACAGCAGAGATAGAGTTAAGAAATGGCACTGAATTAATCCTCAGGAATATCCCCCCCCAAGTCCTGAAGACACTCTCCAAACAGCATAACcaggagagaagagaaaagcaCAGGATACTTCAGGGCCTGatgttcctttttaaaataaacgcTCAGAGAATGTAACTATTTTTATACGGAAGATTCTGAATGACTGTTTTGTTGTGAATGACGTCAGCCATTGAAACGTGAATATGAAGAAATGGCATTTTATTGCCATACAAGAAATTGTGTTTCGTCTCGTGAGATCCTGTTGATTGCTTTTTCTGCCCATAATCAGAGAAGATTATGCACCTCCCCAGCCTGGTACACCGTGTATAGCATTCACACAGGTGCCAAATCTggctttgtttgtctgtttccaTCAATTTAACACAAGACTGACAGTATTTCGCAGTCCTGATGTGATCTGAGTTGGGGGCAAAAAATATAAACGCTCGCCAATAAAAGACAAACCTTACATGACCAGGATTACCAGAGAATTAAACCAGCACTGTACTTGTGTAGGCACAGAAATCCAGCTGCCATTCAGCCATGAGGGGGAAAAATGGCAACATTTAAAGAGACAAACTCCTTGTCTGATGTGGAGTTCAGTACTGAAACACAGGAAGAGGAGGACCTTGGTTAAAGGCCATGTTTGGATGTGTCCTGATACTGTCAGTGCACACTAAGGCAATGCACTTCAAGCCATTTTCCACAACCCCAGATTTTGCTCGCCTTGATTCAATAGGTGTGGAGCTTCTTTAAACATCTCCAAGACTGCTACTCCCCACTTAACTTATTTGGTGTGTTGTGCATATGTGCAGTGAGTTGGGGTTGACACGGTTCAGTCCGTACCAGTCCCAGTGTAGCATTGTGTAGCAGAAGAGCGAACGACCTGGGTGTGAAGCTCTGGCCTACATTCAGTTACATTTTGCAGTGAACATCCATTTTATTCTGCAGTTCTATGCGCGTTTCCAGTTGTTCTCGGACAGCGCAGAATGTGTCACCGAGTTTCACTAGTTCCTTCTTCCCGCATCAGGCCACACATGTGGCTCAGGCTGCATTTTGACTCCATGTTTCTCAGACTTAACATAGTGCTTGCCTTCTCTGTGTGAGTCTGTACAGTCAGCTCTTAGACACTGTGCTTTTCCTGTGGCAATTAATTCAGACTCAGTTGTATTGCAGTGTTTACATATTCCTTCAATTTCTAGTTGGTGATGAATAGCACTGTGGAACAACAtcaatacaatgtgtgtgtgcgtgtgtgtttaaCAACACAATTTACAATGGTCTGGTAGCCGTGTTTAATCTGCAACAGTAGGAACTGGTGACCTGGTTGTTAAAACCATATTCTTCTTCGTTATGTGTGCAGCATATGCTTCAGTCTGGTTTCTCTTCTTCCCTGTTGCCTCTGGTACACAGCTGTGCCTGACAAGCAGGCCGCCTGTGTCTTGACATCATGGTTATACTGCATGCTGCCCATACACAATGTATCCTTTCCATTTTTGACTCTTGGATTAGTTCTGTTAAATAAAAGACTATCCACTGTGTGTACACTTCTGCGTTTGTCATTTCTCCATCTGAGCTCTTGTGAGCATTGCATTGTTAAAGACTGTTAACgttctttaaatacaaatactgtgtgtaatatattttaaaacgtGTGTCAGAATAAACAATCTTGTCTTGTTTAGTAGACTGTACAGACCAGTGTGTCAGTTTTCTGTATTCTCCAAGGAAGTAAGTGCAATGGATTACAAAGTagttatttgtaaaatacacagGCTTATAACtttagagaataaaataatttggagtTTATTGGCTTGacaaataagttattttaaatcctgttcATAAGTTTATTGCATATAATAAGCAATAATATAACTTTATATTCTGAATgaggcataaaaaaaaaactgatttcttTGAAACTGTTTGGCATCTGGCTTCATTCACTGAATTGCTCCATAATTCATGAAGGAAATTAGGCAGAAAATTTGAATTATTACTTATCATttctaaaatctgaaaccttgTTGtgcaaacacattaaattaattaaacttgtgACCCCCTTCCGCTCCTCAGATCCGGAAAACTAATTGAGGCAGAGAAGACTGTGACCGTTCCCTCTCCCAGCGCCATTAGTGTGTTTGGGGCTCATCAGCGTAATTAAGTTGACATGCCTAAACGGCTGACATGCCTATGAAGTCCTGTGTTGTAGGTTTTCTTTCACCTGAACAGGATGTTAATTTGAAACTACCGTGCCCGGTTAGATTTTGcatgaaatgaacacaaatgtttgttttaaacacaaaatccaTGGGCTAATtgcaattaataataactaGTATGCAGTCATGTGCTATCTCGAGGTCATGCGCAGCTGCCTGCTCAATCGCAATGAGAAAACATGCGGCTGACCCCTGCTCAGGAATAAACACAGTTTTgacctgtattttgtttatgtttcaaGCTAATACTGGTATATATAGGTCAAGATGAATCCATAGTTATATAATTTGCCTGTGTAACAGCATGCTAAAATACTCCATGTCAGGGCAAACTgatgaaactgaaaactgataaaattataatttaataccACCTCAAGGATTTCTTTTAGAAATATTATGTGATTTTCTTCAAATAAGTGGGTTGTTCTAGAAACTTCTATAGGCATATTTcatgattacattaatttactGTGTTTACATTGAACAGTGACATTTGTTGGAGCATAAGTAACGTTAAAAAGTgatcgttttatttttttaataacccacaataattttgaatgattttttcCTCTCAAAATGGCATATGTAGTATTTTGTATGTAAGCTCTCCaaaat

Function

NR:

description
PREDICTED: nebulin-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019776 True 7809 mRNA 0.44 18 44070694 44102691

Neighbor

gene id symbol gene type direction distance location
AMCG00019774 ssr1 coding downstream 14091 44046687 ~ 44056603 (-)
AMCG00019772 NA coding downstream 141262 43882548 ~ 43929432 (-)
AMCG00019771 nrn1,LOC106590090,LOC106578581,LOC107713755 coding downstream 193059 43874925 ~ 43877635 (-)
AMCG00019769 NA coding downstream 260989 43804160 ~ 43809705 (-)
AMCG00019765 NA coding downstream 507178 43556899 ~ 43563516 (-)
AMCG00019777 NA coding upstream 1805 44104496 ~ 44112240 (-)
AMCG00019778 NA coding upstream 82841 44185532 ~ 44189156 (-)
AMCG00019779 skida1 coding upstream 136799 44239490 ~ 44241946 (-)
AMCG00019783 NA coding upstream 235821 44338512 ~ 44340800 (-)
AMCG00019782 dnajc1,LOC107589882 coding upstream 264210 44366901 ~ 44383650 (-)
G37048 NA non-coding downstream 247874 43822334 ~ 43822820 (-)
G37021 NA non-coding downstream 513950 43555743 ~ 43556744 (-)
G37022 NA non-coding downstream 515185 43526407 ~ 43555509 (-)
G36977 NA non-coding downstream 767634 43266893 ~ 43303060 (-)
G36907 NA non-coding downstream 1128195 42942242 ~ 42942499 (-)
G37171 NA non-coding upstream 306526 44409217 ~ 44410259 (-)
G37174 NA non-coding upstream 334229 44436920 ~ 44443701 (-)
G37232 NA non-coding upstream 621083 44723774 ~ 44735394 (-)
G37290 NA non-coding upstream 832832 44935523 ~ 44936756 (-)
G37367 NA non-coding upstream 1161391 45264082 ~ 45264334 (-)
AMCG00019768 NA other downstream 356917 43577309 ~ 43713777 (-)
G36982 NA other downstream 709788 43298231 ~ 43360906 (-)
AMCG00019761 NA other downstream 727988 43330289 ~ 43342706 (-)
G36862 NA other downstream 1414301 42644324 ~ 42656393 (-)
G36817 NA other downstream 1526170 42544116 ~ 42544524 (-)
AMCG00019799 NA other upstream 793808 44896499 ~ 44910150 (-)
G37492 NA other upstream 2262647 46365338 ~ 46393098 (-)
AMCG00019824 NA other upstream 3789512 47892203 ~ 47901933 (-)
G37806 LOC100846954,LOC107575789 other upstream 4419977 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 6493505 50596196 ~ 50698163 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000140_00114401_00148026 NEBL coding CI01000140 null 114401 ~ 148392 (+)