AMCG00019799


Basic Information

Item Value
gene id AMCG00019799
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44896499 ~ 44910150 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019799
gtatCGCTCAGAAAGGACATTTTCAAGTCTGTCAGTAACACTTCCTATTTGTGCTCTTTTCACGACTGCGATGGCAAAGAACTTTTACCAGTTGTTTGCCCATATTGCCAGAAAAACAGTGAAAGGATACATTTCCAAGTATTTCTGCCCAAAGGAACCAAGGACAGATGTCTGCCAATGTATTTCTGTTCTAAGTGGAGTGTGGGGAAAGTGGTGGACTTTGCCAGCTCACTGGCAAGTCtaaagaacaataacaacattttaacaGCCAAGAAACTGAGGCTGTGCCATCCTCTCTCTGGAGAAGCACTGAAAATGGAACTATCTTTGGAATCCTTGCTCTCCAACACAGAATCCCCTCTTTATAATGGGGGAGATGTCATTCTAGAATATCTTGACAATGACAGTATTGGAGTAAAATATACAAGTGCCTATCTCACTGAGTgttaa
>TU46596
GCCAAACAATCATGGCGGAGTTGGATATTGGTAAACACTGTCAATTTGGAACTTGTAACCAGAAAGattttctaCCCTTTTTTTGTGATGGCTGCTCCCGGGTTTTCTGcCTCCATCATAAAGGAAGAGAATCACACTGTTGTTCTGAGgtatCGCTCAGAAAGGACATTTTCAAGTCTGTCAGTAACACTTCCTATTTGTGCTCTTTTCACGACTGCGATGGCAAAGAACTTTTACCAGTTGTTTGCCCATATTGCCAGAAAAACGTCTGCCTGACAGTGAAAGGATACATTTCCAAGTATTTCTGCCCAAAGGAACCAAGGACAGATGTCTGCCAATGTATTTCTGTTCTAAGTGGAGTGTGGGGAAAGTGGTGGACTTTGCCAGCTCACTGGCAAGTCtaaagaacaataacaacattttaacaGCCAAGAAACTGAGGCTGTGCCATCCTCTCTCTGGAGAAGCACTGAAAATGGAACTATCTTTGGAATCCTTGCTCTCCAACACAGAATCCCCTCTTTATAATGGGGGAGATGTCATTCTAGAATATCTTGACAATGACAGTATTGGAGTAAAATATACAAGTGCCTATCTCACTGAGTgttaacaattatattttcagattcTTATGATGTtggaaaataattcattttgtaaaatgttttctttgaatttgtattaaaacatatttcagttaataatacattcaagtCAATGTATTGGATCCTCAGTTTGTGAGTAAGGTGAGTTAATTCTAAGTTATTGATGATCCAGTTGAGAAACAAGGATGTGCACACTGCTGGAGGGTAAAGAGGCTTAATTAGAACATTGAATTTCAGACATTatcaaaattacttttaaacGTCAATTTCAagcaataaaaagtaaaattgcaAACAAAT
>TU46597
gccattttaaaagcaatttaaaaaaatatattttcgtGGCCCACCTGCAGTACTTCTACGGCCCACTAGCTGCAGCCCGCAGGTTGGGAATTATTGCTTTATGCCACTTTCACATTCTAGATCTAATATATACTCCTCATTGCTGCTATCGTCACTTAAATTAGAAATGGCATTCAACACTAGATTATTGTGCTGATTCAACACTTACCGTGGTTTCCCTTACGTAGAGACTCCCCCACACACAACCACTTTCACTTCAGAATCAGCATTTTGTACCCTCACTAGTGAATATGGATATGTCAGGTAGGTTGATGTTATGACACAAAAATCTTTTCAGAGCTTGATCCAGATTATTTTGATGAACTTTTAGACTACAATTTGTATAGGCCAGCTgtcagatttaaatatttaaaaaatattaaggaCAAACCTTTTCTGCCCTACAGAGTGAAAGGATACATTTCCAAGTATTTCTGCCCAAAGGAACCAAGGACAGATGTCTGCCAATGTATTTCTGTTCTAAGTGGAGTGTGGGGAAAGTGGTGGACTTTGCCAGCTCACTGGCAAGTCtaaagaacaataacaacattttaacaGCCAAGAAACTGAGGCTGTGCCATCCTCTCTCTGGAGAAGCACTGAAAATGGAACTATCTTTGGAATCCTTGCTCTCCAACACAGAATCCCCTCTTTATAATGGGGGAGATGTCATTCTAGAATATCTTGACAATGACAGTATTGGAGTAAAATATACAAGTGCCTATCTCACTGAGTgttaacaattatattttcagattcTTATGATGTtggaaaataattcattttgtaaaatgttttctttgaatttgtattaaaacatatttcagttaataatacattcaagtCAATGTATTGGATCCTCAGTTTGTGAGTAAGGTGAGTTAATTCTAAGTTATTGATGATCCAGTTGAGAAACAAGGATGTGCACACTGCTGGAGGGTAAAGAGGCTTAATTAGAACATTGAATTTCAGACATTatcaaaattacttttaaacGTCAATTTCAagcaataaaaagtaaaattgcaAACAAAT

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019799 False 450 mRNA 0.41 3 44896794 44907500
TU46596 False 905 TUCP 0.37 6 44896499 44910150
TU46597 True 1074 lncRNA 0.36 2 44896499 44898892

Neighbor

gene id symbol gene type direction distance location
AMCG00019801 cunh7orf25,LOC107722560,LOC105900630 coding downstream 43649 44852128 ~ 44852850 (-)
AMCG00019789 NA coding downstream 339086 44555181 ~ 44557413 (-)
AMCG00019788 pip4k2a,LOC106578380 coding downstream 353519 44517851 ~ 44542980 (-)
AMCG00019782 dnajc1,LOC107589882 coding downstream 512849 44366901 ~ 44383650 (-)
AMCG00019783 NA coding downstream 555699 44338512 ~ 44340800 (-)
AMCG00019800 fbxl7,LOC107718179,LOC107689422,LOC107589836 coding upstream 108990 45019140 ~ 45033185 (-)
AMCG00019802 NA coding upstream 359176 45269326 ~ 45279018 (-)
AMCG00019805 NA coding upstream 1081922 45992072 ~ 46001203 (-)
AMCG00019806 NA coding upstream 1196133 46106283 ~ 46133174 (-)
AMCG00019808 NA coding upstream 1591697 46501847 ~ 46510145 (-)
G37232 NA non-coding downstream 161105 44723774 ~ 44735394 (-)
G37174 NA non-coding downstream 452798 44436920 ~ 44443701 (-)
G37171 NA non-coding downstream 486240 44409217 ~ 44410259 (-)
G37048 NA non-coding downstream 1073679 43822334 ~ 43822820 (-)
G37021 NA non-coding downstream 1339755 43555743 ~ 43556744 (-)
G37290 NA non-coding upstream 25373 44935523 ~ 44936756 (-)
G37367 NA non-coding upstream 353932 45264082 ~ 45264334 (-)
G37413 NA non-coding upstream 552064 45462214 ~ 45463311 (-)
G37425 NA non-coding upstream 688884 45599034 ~ 45599597 (-)
G37434 NA non-coding upstream 737407 45647557 ~ 45648100 (-)
AMCG00019768 NA other downstream 1182722 43577309 ~ 43713777 (-)
G36982 NA other downstream 1535593 43298231 ~ 43360906 (-)
AMCG00019761 NA other downstream 1553793 43330289 ~ 43342706 (-)
G36862 NA other downstream 2240106 42644324 ~ 42656393 (-)
G36817 NA other downstream 2351975 42544116 ~ 42544524 (-)
G37492 NA other upstream 1455188 46365338 ~ 46393098 (-)
AMCG00019824 NA other upstream 2982053 47892203 ~ 47901933 (-)
G37806 LOC100846954,LOC107575789 other upstream 3612518 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 5686046 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 5795690 50705840 ~ 50712143 (-)

Expression


Co-expression Network