AMCG00019823 (kcnq3,LOC107660218,LOC107721728,LOC107663349,LOC107749193)


Basic Information

Item Value
gene id AMCG00019823
gene name kcnq3,LOC107660218,LOC107721728,LOC107663349,LOC107749193
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 47690365 ~ 47705884 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019823
CTCATCCCATTCAGTTGTACAATTTGAGATCACAGAAACAGTGGACACTATGCAGCCTCCTGTAGACAGATCAAaatccaataaaacaaaacaaaatggaatcaTTGTTaaccttgtgttttttcagGAAACCTTTACAATCTTCATATTTGGAGCAGAGTTTGGCTTACGAATTTGGGCTGCCGGTTGCTGTTGCAGATACAAAGGATGGAGGGGGCGTCTGAAATTCGCCCGGAAGCCCCTGTGTATTTTAGACATTTTTGTCCTGATCGCCTCGGTGCCGGTGGTGGCCGTGAGGAACCAGGGCAATGTGTTGGCCACGTCCCTGAGGAGCCTGCGCTTCCTGCAGATCCTGCGCATGCTGAGGATGGACAGGAGGGGAGGGACCTGGAAGCTGCTTGGCTCGGCCATTTACGCACACAGCAAGGAGCTCATCACCGCTTGGTACATTGGTTTTCTCTCCCTCATCCTCGCCTCATTCTTGGTGTACCTGGTAGAGAAAGATGACGTGCCCGTGGATGTGACCGCCAGCCCCACTAGCAAGCCGCCCACGCAGGACTTCGACACGTATGCAGATGCTCTGTGGTGGGGGCTGATCACATTAACTACTATTGGGTATGGGGACAAGACGCCAAAAACGTGGGCGGGTCGGCTGCTGGCTGGGACGTTTGCCCTTATCGGTGTCTCATTCTTCGCACTGCCGGCAGGCATTCTTGGTTCAGGGTTGGCCTTGAAAGTCCAGGAGCAACACAGACAGAAGCACTTTGAGAAACGCAGACACCCTGCAGCAGGACTGATCCAGTCTGCCTGGCGCTACTATGCCACCAACCCGATAAGGAATGACCTAATTGCCACATGGAGGTTTTACGAGTCCATCATATCCCTGCCCTGTTTCAGAAAGGATCAACTGGAAGGAGTGGCCAGCCAAAAGTTAAGTCTCCTGGAACGCGTTCGTCTCTCCAACCCCAGAGGTTCGACCATCAAGGGCAAACTGTTCATGCCTCTGAACCCAGACACCATCGAGGAGAGCCCCTCGAAGGAGCCCAAGCCAGGGGGCTTCACCAACAGAGACAGATTCCGTACTGCCTTCCGCATGAAAGCCTATGCCTTTCGTCAGAGCTCTGAAGATGCTGGAGCTTTGCCTGATCCTGGCTGTGAAGACAAAGGTTTTCCTAGCGACCTACTACTGGAGGAGATGATTCCTACATTGAAGATGGCCATCAGGGCTGTCAGAATCATGAAATTCCTTCTGAACAAAAAAAGATTCAAGGAGACGTTGCGGCCTTATGACGTAAAGGATGTGATAGAGCAGTACTCTGCTGGGCATCTGGACATGCTCTGCAGAATTAAATACCTCCAAACACGaatagACATGATCCTGGCTCCGGGACCTCCTTCAACCCCAAAACACAAGAAGGCCCAGAAAGGACCATTCTCCTACCCTTCCCAGCAGTCCCCTAGACATGATCCCTACATAGCCAAAGCATCAATGCCAGAGACTGAGGACCAAAGCATGATGGGCAGATTTGTGAAGGTGGAAAGACAGGTGGAGCACATGGAAAAGAAGCTGGACTTCCTGGTGGACATGCACATACAGCATATGGACCTACAGGGGGAGCCGGTGGCCCAGGGTCTGACTGTGGAACAACATGGCCCTCACAGTCATGGTGGTGATGGGGAGGACTTGCGATATGCCGAGATCCGTCGAGTGTTCTTCAACTACACCGAGGCCTGCCCACACTCACAGCTCTCCTACCACATCCCCATCAGCAAGGTCACACCCTACAGCTTCTTCAAAGAGCCAGGCGGAGCTGGAGGTGGGGTTGGGATGGGCAGGGGCAacattttcttggcagatgGGCAGGGCTGTGTCAGGCTGCCCCCACCGGCTGTCCCCTCCTACACCGAGAGGCCCAACGTGCTGCCCATCAGCTCGCTGCTGGACTCAAGGAAGGGCCTAGACCATGAGACACATAGCTCTTATCAGGAGGGTGTCTCTCCTGGCCAGGGCTGCCCTCTTCCCCCGGGCAGGGACACTGACACTCCACTGTCCCTGCTCTCCGTCAACCATGAGGAGCTGGAGCGCTCGCCCAGCGGCTTCAGCATCTCTCAGGACAGGGACGACTTGACTTTCGGGCCCTGTGCGGCCGGCAGCTCCAGCTGGATGAGGGAGAAGCGGTACCTGgcggagggagagacagacacagacactgacccCTTCACCCCCAGCGGGcccctgcctctctcctccACCGGGGAAGGGTTTCCCGATTCCATATGGACCACCCCTGGAAACAACAAT

Function

symbol description
kcnq3 Predicted to enable calmodulin binding activity and delayed rectifier potassium channel activity. Acts upstream of or within chemical synaptic transmission. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon initial segment. Predicted to be integral component of membrane. Is expressed in central nervous system; heart; and inner ear. Human ortholog(s) of this gene implicated in autistic disorder and benign neonatal seizures. Orthologous to human KCNQ3 (potassium voltage-gated channel subfamily Q member 3).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily KQT member 3 isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04928 KCNQ3, KV7.3; potassium voltage-gated channel KQT-like subfamily member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019823 True 2302 mRNA 0.55 14 47690365 47705884

Neighbor

gene id symbol gene type direction distance location
AMCG00019822 NA coding downstream 22503 47661324 ~ 47667862 (-)
AMCG00019818 adcy8 coding downstream 409878 47245538 ~ 47280487 (-)
AMCG00019819 adcy8,LOC106949201 coding downstream 453511 47193563 ~ 47236854 (-)
AMCG00019816 NA coding downstream 756936 46922098 ~ 46933429 (-)
AMCG00019815 NA coding downstream 782668 46881732 ~ 46907697 (-)
AMCG00019828 NA coding upstream 84680 47790564 ~ 47790887 (-)
AMCG00019826 NA coding upstream 97180 47803064 ~ 47878857 (-)
AMCG00019827 NA coding upstream 203663 47909547 ~ 47922255 (-)
AMCG00019825 ift57 coding upstream 219912 47925796 ~ 47935253 (-)
AMCG00019829 NA coding upstream 471082 48176966 ~ 48184937 (-)
G37681 NA non-coding downstream 1849 47687034 ~ 47688516 (-)
G37652 NA non-coding downstream 389737 47300127 ~ 47300628 (-)
G37622 NA non-coding downstream 673202 47016837 ~ 47017163 (-)
G37610 NA non-coding downstream 780793 46835708 ~ 46909572 (-)
G37608 NA non-coding downstream 857605 46827783 ~ 46832760 (-)
G37690 NA non-coding upstream 145719 47851603 ~ 47852031 (-)
G37716 NA non-coding upstream 200175 47906059 ~ 47971592 (-)
G37738 NA non-coding upstream 393514 48099398 ~ 48099619 (-)
G37815 NA non-coding upstream 837759 48543643 ~ 48549181 (-)
G37836 NA non-coding upstream 972292 48678176 ~ 48688913 (-)
G37492 NA other downstream 1297267 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 2780215 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 3976588 43577309 ~ 43713777 (-)
G36982 NA other downstream 4329459 43298231 ~ 43360906 (-)
AMCG00019824 NA other upstream 186319 47892203 ~ 47901933 (-)
G37806 LOC100846954,LOC107575789 other upstream 816784 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 2890312 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 2999956 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 3257529 50963413 ~ 50966929 (-)

Expression


Co-expression Network