AMCG00019825 (ift57)


Basic Information

Item Value
gene id AMCG00019825
gene name ift57
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 47925796 ~ 47935253 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019825
tggtttttttattattatttgtgtgtctgttattgACTCAGACTCGATATACAACCTTTTGGAAGCACCAAGCAAgattttgctttaattatttgCTCGGTCGCACTCCCGATCTGTAACCAAGGTGTCCCTTGCTTGGCAACGCTGCGGCAGCGTCACTGTCACTAAACAAGAACCAGTCGAGCCCGCGGTTTCCACTGACACCACACTGTCACCATATcagcacatatacatatatactgtgcCAGATGGCAGAAGATAACAGGCGAGGAGATGAAGATGAGCGAGGACCCGGGGCCGCCTACCAGATGTTTGTGATGATGGAGGACCTGTTGGATAAATTGAAGTTGCTGGATTACGAGGAAGAAGTGCTGAGAAAACACAACATGAAGTCCCTGTCGAGACATTACTTCGCCCTGCCGACAAACCCAGGTGAACAGTTCTTCATGTTTACCATTATTGCGTCATGGCTCATCAACCGGTCTGAACGGCCCTTCGAGGAGCCGCAGGAGGACGATGACCCCAACGCCACGGTGTCCAACATCCTGACGGAGCTGCGGTCCTTAGGTGGAACAGTGGATTTCCCTCCTTCCaaactgaaggcaggatttggGGAGCATGTGTGCTATGTGTTGGACCGGTTAGCAGAAGAAGCCTTGAAAAATACGAGATTCAGCTGGAAGAAGCCGAGCTACCCCagggaggagctggaggaagAGTCTGTGATGGAGGATGATGCGGAGCTCACACTGGACAAAGTGGAAGAAGAGATGACTGAGGAACCAGATGATTATGAAGAAGAAAATCTAATAGACCTGGAAGCTCTGAAGGCAAGGACCAATCTGACTAAAGCCGGCGAGTCCTCGAAGCCAGACAACATTTTGGAGTCAACGACCGACGCAGCAGAGTGGAGCCTAGAAGTGGAGCGAGTTCTTCCACAGCTGAAGGTGACAATCAGGACTGATAATAAGGACTGGCGAGTCCATGTGGACCAAATGCACCAACACAAAGAGGGCATTGAGTCCTCCCTGAAAGAGACCAAGggTTACCTCAACAAGCTGCAAGAAGAAATCAGTAAGACGCTGGAAAAAGTGGGCAGTCGGGAGAAGTTCATAAACAATCAGCTGGAGCATCTAGTCCAGGAGTACCGAGTGGCTCAGTCACAGCTCAGTGAGATTACAGAAGAACTGGAGAAGGTTAAGCAGGAAATGGAAGAAAAGGGCAGCAGCATGTCTGATGGGGCTCCTGTGGTGAAGATAAAACAGAGCCTGACAAAGCTGAAACAAGAGATCCTGCAGATGGATATCCGCATAGGCGTGGTGGAGCACACGCTACTGCAGTCCAAACTCAAAGAGAAGTCCAAAATGACCAGAGACATGCATGCCACCAATATCCCAGAACCTGCCGTTGGTGGCTATTGAGGTGTTCATTTATTGTACACCTCAACATAGTTCAGTGATGCTTCCATACATACAGCtcttggaaaaaattaagagaccacttaacattgatttctgaagctggagtgttctcttaattttttccagagctgtacatatatTGCATTTGAATCATACAGTACCGTTCTTCACCtgcttattgttttattagtataaCTCAGTGTTTTTATACTAAGTGTATTTCCTATTGTAAAtaagtatataaacaaaaaatccaaTTGTATATCTTTATTcatgttaaaacaatatatcagGATAGCAGAGTTGTATATAACATTTTAGCTTTCTTGTAAGATATGTaagatatatatagatttatggTAAATTATATACAAGCAATTTTGTAAACTGCTACTCTTAATAAATGACATATTGGCCTTTCAGtgatttatattgcattatcaaaatgtgatgcatttataaattatacttaAGAATATATCGGTCTAAGCTTTATAACATTGAAAGAATATAtctggaaataaaac

Function

symbol description
ift57 Acts upstream of or within several processes, including cilium organization; epithelial cilium movement involved in extracellular fluid movement; and photoreceptor cell maintenance. Predicted to be located in ciliary basal body. Predicted to be part of intraciliary transport particle B. Predicted to be active in Golgi apparatus; centrosome; and cilium. Is expressed in head and retina. Human ortholog(s) of this gene implicated in orofaciodigital syndrome. Orthologous to human IFT57 (intraflagellar transport 57).

NR:

description
PREDICTED: intraflagellar transport protein 57 homolog isoform X1

GO: NA

KEGG:

id description
K04638 IFT57, HIPPI, ESRRBL1; intraflagellar transport protein 57

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019825 True 1948 mRNA 0.43 10 47925796 47935253

Neighbor

gene id symbol gene type direction distance location
AMCG00019827 NA coding downstream 3541 47909547 ~ 47922255 (-)
AMCG00019826 NA coding downstream 46939 47803064 ~ 47878857 (-)
AMCG00019828 NA coding downstream 134909 47790564 ~ 47790887 (-)
AMCG00019823 kcnq3,LOC107660218,LOC107721728,LOC107663349,LOC107749193 coding downstream 219912 47690365 ~ 47705884 (-)
AMCG00019822 NA coding downstream 257934 47661324 ~ 47667862 (-)
AMCG00019829 NA coding upstream 241713 48176966 ~ 48184937 (-)
AMCG00019832 tmeff1 coding upstream 254884 48190137 ~ 48219430 (-)
AMCG00019838 NA coding upstream 442390 48377643 ~ 48400596 (-)
AMCG00019839 NA coding upstream 630357 48565610 ~ 48598978 (-)
AMCG00019846 dnajb6,LOC105900649 coding upstream 1251061 49186314 ~ 49198381 (-)
G37690 NA non-coding downstream 73765 47851603 ~ 47852031 (-)
G37681 NA non-coding downstream 237280 47687034 ~ 47688516 (-)
G37652 NA non-coding downstream 625168 47300127 ~ 47300628 (-)
G37622 NA non-coding downstream 908633 47016837 ~ 47017163 (-)
G37610 NA non-coding downstream 1016224 46835708 ~ 46909572 (-)
G37738 NA non-coding upstream 164145 48099398 ~ 48099619 (-)
G37815 NA non-coding upstream 608390 48543643 ~ 48549181 (-)
G37836 NA non-coding upstream 742923 48678176 ~ 48688913 (-)
G37874 NA non-coding upstream 931912 48867165 ~ 48867486 (-)
G37942 NA non-coding upstream 1427050 49362303 ~ 49366167 (-)
AMCG00019824 NA other downstream 23863 47892203 ~ 47901933 (-)
G37492 NA other downstream 1532698 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 3015646 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 4212019 43577309 ~ 43713777 (-)
AMCG00019761 NA other downstream 4583090 43330289 ~ 43342706 (-)
G37806 LOC100846954,LOC107575789 other upstream 587415 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 2660943 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 2770587 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 3028160 50963413 ~ 50966929 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G338826 NA non-coding NW_019172936.1 APWO02000145.1 1854597 ~ 1860367 (+)