AMCG00019832 (tmeff1)


Basic Information

Item Value
gene id AMCG00019832
gene name tmeff1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48190137 ~ 48219430 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019832
ATGCATGACACCTCAGTAGCCTCCTTCAAGTTTGCAGAGAAAAAGAGCGACCTGCGAGTGTGTGATGACTCGACGTGCCGCTACGGAGGGACGTGCAGAGATGACGGGGCAGACCTGAAGTGTGTGTGCCAGTTTCAGTGCCACAAAAACTACATCCCGGTGTGTGGATCGAACGGAGATACCTACCAGAACGAGTGCTACCTGAGACAGGCAGCCTGCAAACACCAGAAGCACGTATCAGTGGTGTCAGACGGGCCGTGCTATCCCGaTAATGGATCTGGATCAGGGGAAGGAGAGTACGAGGGGTCGGGGTCAGACGTGGGCAGGAAGTTTACAAAGTGCGGCACCTGCAAATACGGCGCCGAATGCGATGAGGACTCGGAGGACGTGTGCATATGCAACATCGACTGCAGTGGACATAACGAAAACCCTGTCTGCGCAACTGATGGCAACTCCTACAACAATCCGTGCCTGGTCAGAGAGGCATCTTGTATGAAGCAGGAACAGATAGATGTGAAGCATCTAGGAAGATGCCCAGATAAAGATTATAAAGTGCAAATGGGCAAGAAGGATGAGGGGAGTTCATACAAGCCCGATCTCTCAGACACTGGAGGCCAAGGCGATGGAGTCTATGCAGGCGTCCCGGTGCCCTGTTCAAACAACTACGATGGCTTCTGTATccatggaaaatgtgaaattaaatacaacatgGCCTCCTGCCAGTGTGAGTCCGGATACAAGGGCCCCCAGTGTGATGAGACCCAGGACTTCAACATCCTGTACGTGGTGCCCAGTGGCCAGAAACTACACTATGTCCTCATCGCTGCCATCATCGGAGCTGTGCAGATTGCAATCATCGTCGCTGTGGTGATGTGCATCACAAGaaAATGTCCCAAAAACAACAGGGGGCGTCGGCAAAAGCAGAATCTGGGACACTTCACGTCAGACACTTCTTCCAGGATGGTGTAGCTCTGTTTTTGATACTTTTTCTTACCATGTGGAAtacttctttttgttttttgtttcgtctctcgttttcgtttttttgttttttcaattataattattttttttctgggaaaaagaagaatgaagatatttatttcaggggccttattttttctttccttctttgaaCATTTCAAAAGTGTCTGCTGTTGCCAGCCAGCAAAGTTTTTAACAGCATCAGACTGTTTGAaggaaaatgacacaaaaatgcagcttttgttgttacatatataatttgttttctccttttttatgCTTTGTTCTGAAGACAGTAGCGTCCTACCTTGAATCTCATGGTAATGTTATAGACTTCTGCTTCACTCATGGAATGTGCTGTTTATTGGGAACACTCAACAACTTCACCAGATTTTTATGCAGACGCCATGCAGCTGAACAccaaaatgcagttttaaatgaatgaggCATGAGCCAGGGAAGGTGAAGATGTTTACAGTTTGTCTTTaatatggaaaacaataaatagaacacactgtgtttgactagttaataatttaaatgtttgggggaaaatacatagcttttgtttgtttttatgttgttattataataataattattaatattgttattttattcttttttattctaGACACTGCATATCGCATGACTTGTGTATCTGTGTTCTGTGGAGTAGTTTAAACCTAATGAAATGCTGTTTTGGGCAGTTTTGTAAGTTACATTGGAGCACTaccgttttttttatttatttttttttacttttttttctaactCCAGCACTGTATCAATATCTGAACAGGCCTTAGTTTGAAATTAGCAACAACCCCTGAAATGTGACTTGGTAGTGCTTACAGATGTGAGAACTATGAAAACGAGGATATTTTGTCTTTAGAAATCACCAAGTTGTGTGTGATGTTCCAAGAGCAATGGCTGGCCCCTGAGCCCCAACCCAGGCAGAACATTTCTATGTTCAGTTCCAAACACAAGTAGTAATAGTGTATCGATCTGATTTTTTTAAGATCGATACAAAGGCAGGTAGTGCAAAGGTACTTTACCCagactgctccagtaaaaacgATATAAATGGTAACccacaattaaaatgtcaggcaaataaattaataaataagaatgtattACTGTGTGGAACATAAGTTGTagggaaatttaaaaaaaggcaatatGGCGCCCTGTCTTGACTACATGTTTAGCAAGGTGATAAAGGGTTAATGCCTAACATTCATTGAAATCTTTCAATAAAACCACAGACGGAACCTAAAGATAATGATTTTTGTCGGATTTCATCTGATTGTAGCTCTTTGAAGGTAGTATTCTACATGTTGTTTACCATCTAGAGgtgagttttaaaaaacaaaacaaaaaaatgtgagtagaatgtgtttgtttgacaTGTCATTACGTAATCTGCATGTAGTACTTGATagtcagctttttttttgtccaaaacaataaaaaagaaataaaa

Function

symbol description
tmeff1 Predicted to enable signaling receptor binding activity. Predicted to be involved in animal organ morphogenesis; neuron projection development; and tissue development. Located in plasma membrane.

NR:

description
PREDICTED: tomoregulin-1

GO: NA

KEGG:

id description
K23607 TMEFF1; tomoregulin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019832 True 2473 mRNA 0.41 10 48190137 48219430

Neighbor

gene id symbol gene type direction distance location
AMCG00019829 NA coding downstream 5200 48176966 ~ 48184937 (-)
AMCG00019825 ift57 coding downstream 254884 47925796 ~ 47935253 (-)
AMCG00019827 NA coding downstream 267882 47909547 ~ 47922255 (-)
AMCG00019826 NA coding downstream 311280 47803064 ~ 47878857 (-)
AMCG00019828 NA coding downstream 399250 47790564 ~ 47790887 (-)
AMCG00019838 NA coding upstream 158213 48377643 ~ 48400596 (-)
AMCG00019839 NA coding upstream 346180 48565610 ~ 48598978 (-)
AMCG00019846 dnajb6,LOC105900649 coding upstream 966884 49186314 ~ 49198381 (-)
AMCG00019847 ube3c,LOC106578613 coding upstream 1005468 49224898 ~ 49268250 (-)
AMCG00019850 NA coding upstream 1076580 49296010 ~ 49306938 (-)
G37738 NA non-coding downstream 90518 48099398 ~ 48099619 (-)
G37716 NA non-coding downstream 218545 47906059 ~ 47971592 (-)
G37690 NA non-coding downstream 338106 47851603 ~ 47852031 (-)
G37681 NA non-coding downstream 501621 47687034 ~ 47688516 (-)
G37652 NA non-coding downstream 889509 47300127 ~ 47300628 (-)
G37815 NA non-coding upstream 324213 48543643 ~ 48549181 (-)
G37836 NA non-coding upstream 458746 48678176 ~ 48688913 (-)
G37874 NA non-coding upstream 647735 48867165 ~ 48867486 (-)
G37942 NA non-coding upstream 1142873 49362303 ~ 49366167 (-)
G37950 NA non-coding upstream 1257949 49477379 ~ 49477584 (-)
AMCG00019824 NA other downstream 288204 47892203 ~ 47901933 (-)
G37492 NA other downstream 1797039 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 3279987 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 4476360 43577309 ~ 43713777 (-)
AMCG00019761 NA other downstream 4847431 43330289 ~ 43342706 (-)
G37806 LOC100846954,LOC107575789 other upstream 303238 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 2376766 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 2486410 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 2743983 50963413 ~ 50966929 (-)

Expression


Co-expression Network