AMCG00019833


Basic Information

Item Value
gene id AMCG00019833
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48308234 ~ 48352820 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019833
GCCACCTTTAAAAAACTGGAACAGGAGCTGAAAGAGATCAACTCAAACCATGAAGCCCTGAAACTGAACCTGATGGAGTTGATGGAGATGAAGTATTTGCTTCAGCTGACTGAAGATTTCTTTGAAGAGGCAGAATCTCAGCTTTCATGTTCTGAGCTTCCTTCTGATGATTCTGAGTTCCTGGGGACTTCGTCCAGACGGCAGAGTCGGAGGACCAGCACTGTCAGCACGGCAGGGACGGTCAAACTTGGGTTTGTGGCCGGTGTGATCAAACAGGAGAGATTCCCTGCCTTTGAGAGGGTCCTGTGGAGAATGTTTCATGGAAATTTTGTTCTGCGACATGCCACAATGAAAGTGTCTCCTGAAGATTGTCTCGGGGAGGAGGGGGTGAAGAAGGATGTCTTCATCGTTTTCTTACAGGGAGAGGAGTTCAAAGGAAAGATCAGGAAAATATGCGAAGGGTTTCATGCAAATATGTATCCATGTCCTAACAATGTGTGTGCCAGACTGGAAATGAGGACAAACGTCAACACGCGCATTGAAGACCTCCAAATGGTCTTGCAGAGGACGGATGAGTACCGAAAAAGCATACTGACCTCCGCTGCCACAAGCCTGCAAGAGTGGAGCACCAGAGTGAAGAAGATGAAGGCCATTTATTATACGCTGAACCTCTGCAACATAGACATCACCCAGAAGCTAATTATCGCAGAGATCTGGTGTCCGGTGTCTGACCTTTGCACAGTCCACACTGCTTTAATCAAAGGATCTGAGCAGAGTGGTTCCGTCCTATGTCCTGTCCTGAACAGAATAGACACTCAGCAGACCCCCCCTACTTTCAACAGGACCACCTCCTTCACATCAGGTTTCCAGAACATCATTGATGCCTATGGAGTGGGCAACTACCAGGAGATAAACCCAGcacCATACACCATTGTGACGTTCCCCTTCCTGTTTGCTGTGATGTTCGGTGACTGTGGCCATGGACTGATCATGGCTTTCTTTGCTATGTGGATGCTGAAGCAACAggaacaatttaaaaaccttaaaaatgaGTTAACTGATGTTCTTTTCAATGGGAGATACATTGTGCTGCTGATGGGCGTTTTCTCAGTATACACTGGCCTCATTTACAATGACTGCTTCTCCAAAGCCTTCAACATATTTGGCTCTGCCTGGAATGTTAAAGCCATGTTTCAACCAAATGGACCGTGGAGCAACCACACGATACATGGCTCCCAGGTTCTGCAGCTCAACCCCGGGATCCCTGGAGTCTTCTCAAGAGGCCCCTATCCATTCGGCATTGACCCTattTGGAATATCGCATCAAATaaactttctttcttaaatTCTTACAAGATGAAAATGTCTGTGATTCTGGGGGTTATTCACATGCTCTTTGGAGAGAGCTTGAGCCTGATGAATTACATATATTTCAAAAATACCCGCAACATCCTCCTGCAGTTCGTTCCTGAAGTTGTGTTCATGCTGTCTCTGTTTGGGTACCTGGTCTTTCTCATCATCTTAAAGTGGTGCTCTGTGCTGAAGTCAGAAATGGCTCCCAGCCTCCTCCTGCTCTTCATCAACATGATGCTCTTCTCCTACAGTGACTCTGATGACACCATGCTGTACTGTGGGCAGAGGGGAGTGCAGATGTTCTTGGTGGTCACCGCTCTGTTGATGGTGCCCTGGATGCTTCTAGCCAAGCCTTTGCTCATCTATAGAGAACAAATAAAAGCTAGGGACCAGcagaAGGCCTCTCTGAATAACCTTTCATTGTGCGGGAGCTCTGGATATTCGAGCCCACAGTGCGAGCAGGGTCGGGGTGAGGGAAACACAGTATTGACATCAAACAACCATGAGCAGAAGCAGGTTAGCATGGAGGATGTATTTGTGTACCAGGCCATCCACACCATAGAGTACTGCCTGGGCTGTATTTCCAATACTGCCTCCTACCTGCGTCTATGGGCGCTGAGTTTAGCTCATGCTGagctGTCGGAGGTGCTGTGGGGGATGGTGCTGCGGGTGGGGCTGGCGGTGGGCTCTGGGCTGGGCTCCCTGGCGGTGGGCGTGACCTTTGCTGTATTCGCTGTCCTGACAGTGGCCATCCTCCTGGTCATGGAGGGTCTCTCTGCCTTCCTCCACGCCCTGCGGCTACACTGggTGGAGTTTCAAAATAAGTTCTACAAAGGCTCTGGATACAAGTTCACACCTTTGTCATTTGAAGATCTGCTGAACAAAGAATGACAGAGACCGGCTTTTAGTTTAGACACCATTTTAGGGATATGAGATACTGCATTTCTTCTTTAGATTGTTCGGAACACAAATGTGGCTTGTTTgagattattaaaaatgtacccTCTGCGAAAAACCCAAACTAGAATCCCTCACTgccttttatttgattgtattccCATCCGCCCAGTTTGGAATCAACAATTTGCACTTGACTTGGCTCATGCTGCTGTACCAGACACAGCAAAGGCAGACGTGTGTCCTGTGAGAGATAGCTGATCTTGTTTCACactgaatgaaaacaatgtagTTTAAGTGTCAGCCGACAGCACCAGTTGAATACTGTACAACCCTGCGTGTGTCCCATTAGTCAGTATTGGGCTGCAAACCAAGGACCCTGTAGCTGACTGTGCCCAAGCCAAACTCAACCCCCCTCCATCCCTTGGAGCCTGCCAGGCACAATGGCCTAGCGGCACAGCATGCTTTCAATCTGTCAGTGTCCAGATTATCCTCTCAggagatgttttttctttgcaatgTTTCCATGTATTTTACTGCTGCCATTAATTCAGTATGTGCTTCATTTTAGACACCAGATGCTCACGGAGGTAGTTGCTGCTGGCTCCTGCTGCTGTTGGAGTCTTAGTTTAGTTTGTTAGTTCATTAGAAGTGTATTCACTACCTCCATAGAATAAGAGCAAGCATGGTTTGGGGCCAGGAGTGCTCCTTTATCTAGTGTTGCTAAAGACTCAGTCAGTATTCTTTTGCAGGGGGTTTTCATGTATACTGGGagcatgttttaaaatttgTGATCGttatgatgttgttgttttttatgcaaAACTACATCATTaaagaatattttaattgcttatATTAGACTTTTCACTTGATCATAatgatttcaaaattaaatctaattCCACAGAATTGGATTTCGCATTGGAATCCAGTGTTTACCTGGCAAATAGATATGAGAATTTGAGAGTTATCTTGGCATACATGACACACGTAATCGTATTTCctgatttattaattgtaatgtgaGATTTGCAATTCAATAAATCTGATGAGACATTGACCATaaccagcccccccccccccaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019833 True 3355 mRNA 0.46 17 48308234 48352820

Neighbor

gene id symbol gene type direction distance location
AMCG00019835 NA coding upstream 3796 48258596 ~ 48304438 (+)
AMCG00019831 LOC107555322 coding upstream 131898 48135651 ~ 48176336 (+)
AMCG00019830 NA coding upstream 202101 47977293 ~ 48106133 (+)
AMCG00019821 efr3a,LOC107749108 coding upstream 715080 47580292 ~ 47593154 (+)
AMCG00019817 NA coding upstream 1238486 47068996 ~ 47069748 (+)
AMCG00019834 NA coding downstream 10503 48363323 ~ 48377033 (+)
AMCG00019836 NA coding downstream 161854 48514674 ~ 48540763 (+)
AMCG00019837 NA coding downstream 188217 48541037 ~ 48541384 (+)
AMCG00019840 NA coding downstream 488226 48841046 ~ 48862434 (+)
AMCG00019841 NA coding downstream 589035 48941855 ~ 48990943 (+)
G37733 NA non-coding upstream 192457 48115465 ~ 48115777 (+)
G37703 NA non-coding upstream 398648 47906060 ~ 47909586 (+)
G37700 NA non-coding upstream 406619 47900317 ~ 47901615 (+)
G37693 NA non-coding upstream 424468 47883538 ~ 47883766 (+)
G37689 NA non-coding upstream 456200 47851604 ~ 47852034 (+)
G37784 LOC100846954 non-coding downstream 170055 48522875 ~ 48575651 (+)
G37783 NA non-coding downstream 190805 48543625 ~ 48549181 (+)
G37820 NA non-coding downstream 284523 48637343 ~ 48638164 (+)
G37871 NA non-coding downstream 510711 48863531 ~ 48863760 (+)
G37876 NA non-coding downstream 561426 48914246 ~ 48914509 (+)
AMCG00019820 efr3a other upstream 650233 47622768 ~ 47658001 (+)
G37561 LOC100136012 other upstream 1516749 46791027 ~ 46791485 (+)
G37372 sugct,LOC107687505 other upstream 2738297 45279455 ~ 45569937 (+)
AMCG00019785 NA other upstream 3864478 44435922 ~ 44443756 (+)
G37105 ssr1 other upstream 4251631 44053074 ~ 44056603 (+)
G37779 NA other downstream 97808 48450628 ~ 48451167 (+)
G37962 NA other downstream 1205662 49558482 ~ 49561383 (+)
G37964 NA other downstream 1210074 49562894 ~ 49563214 (+)
G37968 NA other downstream 1218367 49571187 ~ 49571486 (+)
G38084 NA other downstream 2490935 50843755 ~ 50845879 (+)

Expression

AMCG00019833 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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AMCG00019833 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00019833 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110536549 LOC106579607 misc NC_048575.1 CM023229.2 12348249 ~ 12366127 (-)