AMCG00019838


Basic Information

Item Value
gene id AMCG00019838
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48377643 ~ 48400596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019838
ATGATGTGTGACTGCGGAGATGAGGAGAGCGGGGCTCTGTACTGTGACTTTTGGGGGATGGATACTAACCAGATTAAAGCCGTGGAGCACAGGACATgTATTGGCCATGAGCGCAGCCCTCTAGGAATGGCGGCACCAGCTTTGAGGAGCACCGCTACCGTGACCCCCCTCACCCCGGTGACCCCATCTTCCTCCAGGCTGTCCTCGCTCTCCCAGAGGGGcgtgtcctctcacatctcctCCTCTGCCACTGGCAGACACTCCGAGAGCTTTGCCGCAGCCCTGAGGAAACTGGCCAGGCAGTCTGGGGACCCCCAAGAATCCCTTTATGGTGTTGACGAGCATTCGTCCCCAGCCCTGCAACCCTGCTCCCCTGGCAGGGCCCCGGTGGACACACAGAGAGTTGGGAAGCCAATGCCTGTGGTCAGCATCCCCCCCACACGACTTGGGGGTGATCTCTGGAGGAATGACAGCTCTCGGCCTTTCCTGATTCACCACAGCAGGAACGAGCTCCCTCTATCAGCTGCTTACTTGTTGAAGCATGAACGGACCACTGgttcctctctccctgctcaTTATTTCCACAGAAGCAGCGCCCAGGAGACAGGGCCCCCCTCACTGAGtttgcagagggcagcagggaAGAGGTCAGATGGGTACCCAGCAGGATTCCACCCCTATATCAGCAGAGACGCCGTCCGACCACTGCCCACCTACCCCAGTCTGCCCGTCCACTCAGCCGCCTCCAGCTATTACTACCCAGCCTTCCTGCCACACTTCCCCCTGCATCCCACTCTGTGCAGGTTTGAAGACCCATATTATCTGTCTGCCCAGAcacctctccttcactcctcaGAGATGAACACTTTCTCTACATTTCCCACCTCTGGCCTGCAGCTCCCTTCGATGTCTTCAGACACAGCCAGTGTCCGAGCTACAGTACTGCGCAATGCACAACACAGGAGCCATACAGATAGGAGGAGCAGAGAGGACATGAACAGCCATAGACCCAGAGAAAATCACCATGAAAGTGACTCTCGCAGCGTAACCCCAAGAAGTGGGAGGAGCAGTGAGACTCCgctggagaaggagaggaagagactCCGAGAGCCTCCCGAGGAGAAAGACTTCTGTAGAGAGAAAGAACTGAAGCAAGATAAAGAGATGGATAAAAAGAGTCCTGAACCTCGCTTCAACAACCACCACAGCAACAGGAGCCCTTGTACTTCTTTCTTTAGGCCTCATTCTCAAAAACTGTACCAAGTACAAGAGCAAAGCCCGTGGCACCGGACATCTCTGTCCTCAGCGCCGATAGATCCCAAAAAATCTCTTCAGTATGAGAGGGCATCTCGTTCCTCAGAGCTTGAGAACAACACCCACCTCAACTCTGCATCAACATCGTCCTCATCACCTGCCAGAATCTACCCTATAAGTCCCTTGTCCTCTTCATGGCCAGGTGAAAAGGAaggtctttttaaatgtaacttgaACCTATTTAAACCCCAACACACCAGCAAAGAAGAGGCCCCAAATCACATTTCACcaccagaaaaagaaaagctgagcATGTGCATGAACCTAAAAGCAGGTGACACAAGCTCAGATGAGAAGGCCAGGGAGGACCAAACACTCAGGACTGGGCTGTTGTCCTCAAACACTTCACGAATCCACCTGCGGGAGGCAATCCCAGAACCTAAGGATTACTCAGAGGTTCTCGACTTCAGTCAGAGGGGCAGTTCTGCTGTCAAAAGGGATTGGCATGAACCTGTACAGCAGCATGCCAAAGGGTCTGCTAACAGCACGTCCCGTCAAAGGACACACTCCCCAGAACTCCTCACTGCCAAAACAAGCTTAACGGTTGCACAGAGGGATCACTACAAGAACTCTGCAGGAGACAGTGCAGCTGGTCTCAGCTCGGTGCCTGACTTGTTAACGCACATTCCACGTTTTCCGAGAGCGCATCATGACAGCTATCGGCAGGACTTGACTGGAAAAAGCAGCAGTCCGGGTGTCCAAGACTCTCAGGTGCTTTCTCTGGATTTATCCATGACGACCTTAGATGGGGCTACAAATCTCAGGGTTACAAGTCATTGTGGACAGAACGAGCCCGGGTCTGGAATCCTTGGTGCTCCCAACCACGTTGTCCAACACTGGAGGCAGCTGGAACTGAAGCCACTCACCAGTGAAATGGTTCCCTTGGAGAGGAATGTAGAGCAGTCCAGAAAAAGAGGTATGGATGCCTGCCCTTGTCTACCAAGAAACCCTGGCAGACTCAAACGCCCCCAGTTCCTACAGTGCTTTGACACTAGCATGGCAGAACAAGTGCTTGTAGAGTCCAGTCTGCAAAAGCCAGTCTCTAAGTGCTCGGGGGCAGAGCAGGAGTCGGTTCAGTCCACAGGAGGTCCAGATGAAACTCTAGATTTCAAGGAAAAGAAACAGTTCCTGGCGCTCTTGGACCTAAAGCCTCAGGCAGCATCTCAGGGAGTGGGAGATGATGGGTATTCCAGCCCTGGTTCTCGGTCACAAGGTCCAACGGATGAAGAGGTTATAGATTCCAATCCTTCCAACCTTTCCGAAGAGGAGGAGCTCAAGGATTCTTGCTCTGAAGGGGAAGCAGTTTGGATGCCAAAATGGCAGGGCATTGACGGGGTGTTTGAGACCTACACAGAGTACATGGAAGAGAGAGAACTGGAAGAAAGTGTTCTTCAGGAGCAGCTGATATCGCTAAAAGAGGAAAACACAGAACTGAATCTAACAGTAGAGAATTTAAGTTCTCATCTGCAGGAACTGgagtcaaacaaacaaaaactggagAAAGAGCAGAAGTGTCATCAAGCGGCCATTGACTGCCTCAAAAAGTGCCTCACGTTTACAGTGTAGTTAAAGGTGTTAGGgacactttttctgttttaaaatgagacaAGTAACCTGTAATTTAAGATGCAAGCAATGTGGAAGTGATGTGATTTAGAAGGGCTATCCCAGCTTTAAAAATCATCCAAAAACAGAATGTGAAGAAGTACAATCCTGCAGAACTGGTATTCCTGATCGATATTCTGTACCCCcttcaaaatatatgtaaatagtCAAAAAAGTTGAACTGCTTGGAAAAATGTTCACAAGCCCttgatcataaaaataatactatcacaaaatgtaaagcagCTGTAATGCAGACAACCATATCACAGCAAAATATGAGCTCTGCTACTGCTTTATGTGGGAAAGACAATGCAATGGTACAGAGTGTCACACATTTTGACCCGTCCTCTCACCCCTTTATATTTAATGTGGAATAATTAAACTTTAGCCAGATCTGTCATTATTGCATCATCAGACACATGTGCTCTTGTGGTAAAGCTTCCTACCCAGTAAAGTGCtcaatgggggaaaaaaggagcTTGATTCTCAGACCCCAACACCAAGTATGTAAATCTTGTGTCAAAACCTACTGTGATATTGCAAGAGATACTGGCAGAACCTCAGAGCTCTCTGTACAGGATTCAAGCTAGGGTTTCAAATTAAGCATATTGTgggattccccccccccccccatcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019838 True 3560 mRNA 0.50 14 48377643 48400596

Neighbor

gene id symbol gene type direction distance location
AMCG00019832 tmeff1 coding downstream 158213 48190137 ~ 48219430 (-)
AMCG00019829 NA coding downstream 192706 48176966 ~ 48184937 (-)
AMCG00019825 ift57 coding downstream 442390 47925796 ~ 47935253 (-)
AMCG00019827 NA coding downstream 455388 47909547 ~ 47922255 (-)
AMCG00019826 NA coding downstream 498786 47803064 ~ 47878857 (-)
AMCG00019839 NA coding upstream 165014 48565610 ~ 48598978 (-)
AMCG00019846 dnajb6,LOC105900649 coding upstream 785718 49186314 ~ 49198381 (-)
AMCG00019847 ube3c,LOC106578613 coding upstream 824302 49224898 ~ 49268250 (-)
AMCG00019850 NA coding upstream 895414 49296010 ~ 49306938 (-)
AMCG00019851 NA coding upstream 966376 49366972 ~ 49375625 (-)
G37738 NA non-coding downstream 278024 48099398 ~ 48099619 (-)
G37716 NA non-coding downstream 406051 47906059 ~ 47971592 (-)
G37690 NA non-coding downstream 525612 47851603 ~ 47852031 (-)
G37681 NA non-coding downstream 689127 47687034 ~ 47688516 (-)
G37652 NA non-coding downstream 1077015 47300127 ~ 47300628 (-)
G37815 NA non-coding upstream 143047 48543643 ~ 48549181 (-)
G37836 NA non-coding upstream 277580 48678176 ~ 48688913 (-)
G37874 NA non-coding upstream 466569 48867165 ~ 48867486 (-)
G37942 NA non-coding upstream 961707 49362303 ~ 49366167 (-)
G37950 NA non-coding upstream 1076783 49477379 ~ 49477584 (-)
AMCG00019824 NA other downstream 475710 47892203 ~ 47901933 (-)
G37492 NA other downstream 1984545 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 3467493 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 4663866 43577309 ~ 43713777 (-)
AMCG00019761 NA other downstream 5034937 43330289 ~ 43342706 (-)
G37806 LOC100846954,LOC107575789 other upstream 122072 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 2195600 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 2305244 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 2562817 50963413 ~ 50966929 (-)

Expression


Co-expression Network