AMCG00019856


Basic Information

Item Value
gene id AMCG00019856
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 49648920 ~ 49652027 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019856
ATGGAAGAGAACGAGCCCAGGCACAGGGAGCCGGACCGCCAGGAGTCGGGGGACGAGTCCAACAGGGCCATCATCCCTCTCCTCCAGGCTCCGGGGAACCTGCAGCTCCCGCACCGCATCACCAACTTCTTCATCGACAACATCTTGCGGCCGGACTTCGGCCGGAGGAAAGAGGGGACCTGTGTCCGGGACCAGGGCAGCCTCCCCGGCAGGGACAGCCTGAGCCCCTCTGCCCCCGGGACGGGCCGCTCAGAGGGGACGGTCTCGGGAGAAGGGACCTCCAGCCACCCTTCTCTGAACGGGGCCAAGAAGGCGGACATTGCCCCCGACGAGCCCCTGCGAGCCCGGGGAGGGGAGAGTGGCGACCAGTGCCTGAGCTCCGACTCGGATAGTTCCCAGGCCAGCTCCACCACCCCGTCCCAGCCCATGCTGTGGCCCGCCTGGGTGTACTGCACCCGCTACTCGGACCGGCCGTCTTCAGCAgtagtcatcatcatcatcatcattatcgtttaa

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0030901 midbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019856 True 516 mRNA 0.66 2 49648920 49652027

Neighbor

gene id symbol gene type direction distance location
AMCG00019854 NA coding downstream 60570 49584196 ~ 49588350 (-)
AMCG00019853 NA coding downstream 64779 49541400 ~ 49584141 (-)
AMCG00019851 NA coding downstream 273295 49366972 ~ 49375625 (-)
AMCG00019850 NA coding downstream 341982 49296010 ~ 49306938 (-)
AMCG00019847 ube3c,LOC106578613 coding downstream 380670 49224898 ~ 49268250 (-)
AMCG00019857 insig1,LOC107094588 coding upstream 47211 49699238 ~ 49707383 (-)
AMCG00019859 htr5a,LOC106578632 coding upstream 196531 49848558 ~ 49850719 (-)
AMCG00019860 NA coding upstream 346054 49998081 ~ 50062124 (-)
AMCG00019863 NA coding upstream 693122 50345149 ~ 50351244 (-)
AMCG00019862 actr3b,LOC107550018,LOC107664653 coding upstream 842075 50494102 ~ 50509867 (-)
G37950 NA non-coding downstream 171336 49477379 ~ 49477584 (-)
G37942 NA non-coding downstream 282753 49362303 ~ 49366167 (-)
G37874 NA non-coding downstream 781434 48867165 ~ 48867486 (-)
G37836 NA non-coding downstream 960007 48678176 ~ 48688913 (-)
G37815 NA non-coding downstream 1099739 48543643 ~ 48549181 (-)
G38007 NA non-coding upstream 120477 49772504 ~ 49772734 (-)
G38016 NA non-coding upstream 235902 49887929 ~ 49888191 (-)
G38045 NA non-coding upstream 722460 50374487 ~ 50374712 (-)
G38053 LOC105030512,LOC106573797 non-coding upstream 834353 50486380 ~ 50489297 (-)
G38130 NA non-coding upstream 1096726 50748753 ~ 50749458 (-)
G37806 LOC100846954,LOC107575789 other downstream 1125218 48522668 ~ 48523702 (-)
AMCG00019824 NA other downstream 1746987 47892203 ~ 47901933 (-)
G37492 NA other downstream 3255822 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 4738770 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 5935143 43577309 ~ 43713777 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 944169 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 1053813 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 1311386 50963413 ~ 50966929 (-)

Expression


Co-expression Network