AMCG00019862 (actr3b,LOC107550018,LOC107664653)


Basic Information

Item Value
gene id AMCG00019862
gene name actr3b,LOC107550018,LOC107664653
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 50494102 ~ 50509867 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019862
TAAACAAAGCCCTCACTCCAGCCAAAACTAAGTGTGGTCACAGATCCCTAACTTCACAAATAACCAGTGAAACACAGACAAGACAAACAGCAGCCGGGCCAGAGTCCCTGATCCAAATGAGTAGTTCAGTTCAAAGCTACCAGGGGGTTCCTTCTGTTCTTCTCAcgctccacaccagcaggggaGAAAGGCAGGAGGAGCCCCCCAGCAAGTGCCCACTGGGAGAGCAGGCTGGTGGTTAGGGACGCAGTGGAACACCCCCCCCATCCTCTGGAGGCTTCAGGCCTCTCACCTCCTGACCTTAAACATGCTGATTCACACTggaggcatgttttttttattgtacaccACCACCTCATCCAGCATCTGCTCCCAGGGTGGGCGGCCCTCTGGACGGTGGGCCAGGCCGTTCTTAACCAGGTCCTGGCAATcTCAACCGCAGGCCCGGGCCGTTGCCATGGACACAGCATTCCCCGCGGGATCGGCGAACATCCGGGGATGCCTCCGCGTTCCCCTTTGACCCGGAAGCGCCCCGGCTGTCATAACGGGAGTCGCGGTGCGGGGGCTACCTGCGCTGCAGTCCCGCCGGCCCTGCGAGTCTCTGTCGGGGACACGTCTGCTCCATGCTGGCCTAGGCCTCCCGGGATCCGCGGCATGGCAGCGCCTCTACCCCCTTGCGTGATCGACTGCGGCACGGGATACACCAAGATTGGCTATGCTGGAAATACAGAGCCCCAGTTTATCATACCATCATGCATTGCGATCAGAGAGTCGGCAGGAGTGGGAGACCAGGCGCAGAGGAGGCTGATGCGTGGATTGGAAGATCTAGATTTTTTCATAGGAGATGAAGCCATTGATAAGCCCAACTATGCGACAAAGTGGCCTATCAGGCATGGCATTATAGAAGACTGGGATTTGATGGAGAGGTTCATGGAACAAGTTATATTTAAGTATCTTCGAGCGGAGCCTGAAGACCATTATTTTCTCATGACAGAGCCCCCACTGAACACCCCGGAGAACAGGGAGTACCTGGCGGAGATCATGTTCGAGTCGTTCAACGTCCCCGGCCTCTATGTGGCCGTGCAGGCCGTCCTGGCTCTGGCTGCGTCCTGGACCTCCAGGCAGGTGGGGGAGCGCACTCTCACTGGCACGGTGGTCGACAGCGGAGATGGAGTCACCCACGTCATTCCAGTGGCAGAAGGCTATGTCATCGGAAGCTGCATTAAGCACATCCCTATCGCGGGAAGGGACATCACGTATTTCATACAGCAGCTCCTGAGAGACCGGGAGATGGGCATCCCTCCGGAGCAGTCCCTGGAAACGGCCAAGGCCATCAAGGAAAGATACTGCTATATCTGTCCAGACATAGTGAAGGAGTTTACTAAATATGATACGGACCCTGTGAAATGGATCAAGAAGTACAAGGGTATCAACGCCATTAGCAGAGGAGAATTTCATATAGATGTTGGATATGAAAGATTCCTGGGCCCAGAAATCTTCTTTCATCCAGAGTTTGCCAATGCTGATTTTATGCAGCCCATCTCAGATGTAGTAGACGAGGTCATTCAAAATTGTCCGATCGATGTCAGGAGGCCACTATATAAGAACATCGTCCTCTCTGGCGGCTCCACAATGTTCAGAGACCTTGGCCGGCGCCTGCAGAGGGACCTAAAGAGAGTGGTGGATGCCCGGCTGAGACTGAGCGAGGAACTCAGCGGAGGCAGGATCAAGGCGAGTGTGGGTTTACGCGGCCAAAGCTTCCCCCCCCATTCTTTGccCAAACCCATTGAAGTCCAGGTCGTAACGCATCACATGCAGCGCTTTGCCGTGTGGTTTGGGGGCTCCATGCTGGCTTCCACGCCCGAGTTCTTCCAGGTGTGCCACTCCAAGAAGGACTACGAGGAATACGGACCCAGCATCTGTCGCCATAACCCCGTCTTCGGAGTCATGTCATAAGCGCGGTCCGTCACAAGTCAAGGCCCGGCGTGGAGCCAAGCTTTCCAATCCGGTAGCACATGGGCCGCACCGCTGACTGGAGCACTGGTGTTGTCGGGTAggaagagagacagatacagattaaaaaacaacaagtaGAGAAACGTAAAGTAAAGCCATAAATCGATGTTTCTGTCACTTGGTGGGCCGTGTTCATAGCAATTGTACCATCCGGCTGTGTTGACACCCCAGCAGGGCAAGAAAACGTCAAGATAAATGAACGCACAACCGTCATAGTGCTGTTTTAAGTTgccaaaagaaaattaaatgcttaattaattaGATTTGTTGCCCCCGTCTTCTAAAGAAGTGGTGGCGGATGGAACGTGCTGTTGAAGTTTTGTGAATGTGGGCCTAGGCCATGACTAGTTCTCCGGTTCTGCTGAGCAGGCTGGATTAGGACAATATCTATTTATTAGAGGTACGACAGAGGGCAGCCTAagttattgcttttaaaaacaaatatatatgaccGCAGAGTGTGACATGTTCAGAATGTacgtacagtatataaatatagacaATTCTTGCggattattttatatttcaggaTATTTTGTGTTGAGGATGATCTGATATGAAGGTGTCATGTTTAAATACAGGCATGTGAATCATTTAAATAGGCTGTATGTCATCCATTAGATTCTAACTGCTGTGCTTTACAGACAATAGAGATTGATTTGAACTGATATTAATcagatgtaataaatatatattatctatatcTCCtctaacatgtatttattattggtttCATTTATTGACCTATACTATCGGGTTATATCGCAGGGTTTTATGTTCTGACTGACGGCTAATAGCCTGAATCAGACCAGCGTTAATACAGGCTCTTCACAGCTTTTAGAGGTTTAATGCTCTTGGGTTTTTCCTAATCTGTAGGATCTCTAAATAAAGCTACAACCATA

Function

symbol description
actr3b Predicted to contribute to actin filament binding activity. Predicted to be active in actin cortical patch. Orthologous to human ACTR3B (actin related protein 3B).

NR:

description
PREDICTED: actin-related protein 3B

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K18584 ACTR3, ARP3; actin-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019862 True 2918 mRNA 0.50 14 50494102 50509867

Neighbor

gene id symbol gene type direction distance location
AMCG00019863 NA coding downstream 142858 50345149 ~ 50351244 (-)
AMCG00019860 NA coding downstream 431978 49998081 ~ 50062124 (-)
AMCG00019859 htr5a,LOC106578632 coding downstream 643383 49848558 ~ 49850719 (-)
AMCG00019857 insig1,LOC107094588 coding downstream 786719 49699238 ~ 49707383 (-)
AMCG00019856 NA coding downstream 842075 49648920 ~ 49652027 (-)
AMCG00019871 NA coding upstream 410399 50920266 ~ 50921526 (-)
AMCG00019868 kdsr,LOC107681813,LOC107727538 coding upstream 417413 50927280 ~ 50943520 (-)
AMCG00019870 vps4b coding upstream 436005 50945872 ~ 50952372 (-)
G38053 LOC105030512,LOC106573797 non-coding downstream 4805 50486380 ~ 50489297 (-)
G38045 NA non-coding downstream 119390 50374487 ~ 50374712 (-)
G38016 NA non-coding downstream 605911 49887929 ~ 49888191 (-)
G38007 NA non-coding downstream 721368 49772504 ~ 49772734 (-)
G37950 NA non-coding downstream 1016518 49477379 ~ 49477584 (-)
G38130 NA non-coding upstream 238886 50748753 ~ 50749458 (-)
G38135 NA non-coding upstream 256930 50766797 ~ 50767409 (-)
G38139 NA non-coding upstream 275123 50784990 ~ 50786016 (-)
G38145 NA non-coding upstream 320766 50830633 ~ 50843640 (-)
G38152 NA non-coding upstream 336110 50845977 ~ 50850167 (-)
G37806 LOC100846954,LOC107575789 other downstream 1970400 48522668 ~ 48523702 (-)
AMCG00019824 NA other downstream 2592169 47892203 ~ 47901933 (-)
G37492 NA other downstream 4101004 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 5583952 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 6780325 43577309 ~ 43713777 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 86329 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 195973 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 453546 50963413 ~ 50966929 (-)

Expression


Co-expression Network