G30594 (sspo)


Basic Information

Item Value
gene id G30594
gene name sspo
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 266073 ~ 267927 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU38247
ccgagattgtatctgctgagatacctattttagtatcatctgcaaatttgacaggTTTACTAACTATCCCAGAATATAGTGTGATATCAGACACCTGAGTTCTCAAACTGGGAAATTAGTCCGATTTAGGTCTCAATTAAGTACCTGAGAGATGAGCTGGAGCACAAACCAACAGGACAGCATGGCCTGAGACCAGAGTCACTTTCCCTGGTGTAGTTGACCACTGTTGTGAACCAGTTTAGCAGGTGGATAATCCACAACTCCTACAGGCCAGGTCAgcacctctctgtctctctgtctctctccatccctctctctctctctgactgccCAGGAGAGCCAGTGGCAGATTGTCGGCGTTACACAGAGCTCCGAAACATCACCAAGGGAGACTGTCACCTTGAAAACGTGGAGGTCAGCTACTGCAGTGGACGCTGTCTGTCCAGGACCAACGTCATCACagagGAGCCCTACCTGCAGGTGCTGTGTGAGTGCTGCAGTTACCATCTGGACCCCCAGAGCCCGGTGCGCTTCCTCAGCCTGCCCTGCCGCAGCGGGGAGCTGGAGCCTGTCGTGCTGCCCAACATCCACAGCTGTGAATGCAACAGCTGCCAGGGGGGAGACCTGGCAACACCTTGAGCGCTTCCAGCAGGACAgactggacacacagacacacagacagacaggctctGTGCGTCTCCAAGCCCCTGTGTAAACCTGTGC

Function

symbol description
sspo Involved in spinal cord anterior/posterior patterning. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in floor plate; presumptive floor plate; and subcommissural organ. Used to study scoliosis.

NR:

description
PREDICTED: SCO-spondin isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38247 True 723 lncRNA 0.54 3 266073 267927

Neighbor

gene id symbol gene type direction distance location
AMCG00018985 NA coding downstream 68475 191794 ~ 197598 (-)
AMCG00018974 LOC107574283 coding downstream 94083 168042 ~ 171990 (-)
AMCG00018976 NA coding downstream 165819 94817 ~ 100254 (-)
AMCG00018972 kcnh2,kcnh2b,LOC106590277 coding downstream 210961 26747 ~ 55112 (-)
AMCG00018973 NA coding downstream 240278 14785 ~ 25795 (-)
AMCG00018986 NA coding upstream 13907 281834 ~ 290903 (-)
AMCG00018987 NA coding upstream 30907 298834 ~ 309982 (-)
AMCG00018996 NA coding upstream 95276 363203 ~ 382072 (-)
AMCG00018995 NA coding upstream 114496 382423 ~ 390814 (-)
AMCG00018993 NA coding upstream 137442 405369 ~ 411757 (-)
G30593 NA non-coding downstream 6008 259434 ~ 260065 (-)
G30539 NA non-coding downstream 191923 73888 ~ 74150 (-)
G30612 NA non-coding upstream 145961 413888 ~ 414282 (-)
G30760 NA non-coding upstream 254192 522119 ~ 523996 (-)
G30784 NA non-coding upstream 444785 712712 ~ 733413 (-)
G30797 NA non-coding upstream 566531 834458 ~ 839109 (-)
G30809 NA non-coding upstream 619722 887649 ~ 894190 (-)
AMCG00018975 kcnh2b,kcnh2,LOC107713341,LOC106590277 other downstream 111548 144253 ~ 154525 (-)
AMCG00018992 NA other upstream 185028 452955 ~ 454764 (-)
AMCG00018991 NA other upstream 205522 473449 ~ 477096 (-)
G30729 NA other upstream 230805 498732 ~ 500189 (-)
AMCG00019007 LOC106613553,LOC108443229 other upstream 346471 614398 ~ 634293 (-)
G30849 NA other upstream 906597 1174524 ~ 1174983 (-)

Expression


Co-expression Network