G30797


Basic Information

Item Value
gene id G30797
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 834458 ~ 839109 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU38533
ATTTGCTTGGTTAGAAGATTAGTTTCCAGGTCAGTCCTCCGTGACCATGGGGCTGTCCCTATAGACCTGCTCTACAGGactgctgggctgggctgtgggGGGGCCTCACTGTTGCTGGAGCTCACCTGTCCTGGGCCTCCTCGGGCCGGGCTCTCTTGCCCACTCCTCCCGTGGTGCTGGGTCCGGCCCGCTTGGTGCGCTGGCGGTGCTGCAGCTTGCACTTGGCGCCGCGGGGGCAGACACCGCTCTTGGAGAAGTCTGGACACAGCAGGGTGTGCTTCTTCTtgcactgaaaaacacacagtacGGTTCACCCCACTCAGACTGGTCAACACAGAGAGACTGGTCACCCCACTGACACACTGGTCACCCCACTCAGAATGCTCAAATCATGGTTTggtttttaactttaaataaatctgatggtctttttaaaataaatgtgttagtgtgtgtgtgtgcgtgtgtgcctgtgagtgtgtgtgtgtcagtgtgtgtcagtgtgtgtgtgtgtgtgcgtcagtgtgtgcctgtgagtgtgtgtgtcagtgtgtgcctgtgagtgtgtgtgtgtcagtgtgtgtgtgtcagtgtgtgcctgtgagtgtgtgtgtctcagtgtgtgtgtcaagtgtgtgcctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtcagtgtgtgcctgtgagtgtgtgtgtcagtgtgtgcctgtgagtgtgtgtgtcagtgtgtgtgtctcagtgtgtgtgtgtgtgtcagacctGCTCTCAGTCCTCAGCCTCATTCTTCAGGAGATTCAATCTCTTCCACCTGTCAGAGGAGCTAATTATACAGCGGGGGGGAGCAGGCTGACCCGTGAAGAGAGGGATAGTGTTACTGCAGGAGGAGTCACggctgcacaaacacacacaaacaagcccTCACACTTGTGGGACAAGGGGGCTGCAGCACCAGACAGGCAGACCGGGCCGGGCCCAGAACCACCAGCGCTCCAGTCCCATGATGCCTCAATTTAGTGCGTCTGTCTGTTCCCTGCGTCTGTAACGCCAGTGAGGGCGGCTACATCACGCCCACATGAGCCAGTCATTACAATCATTaattggatggatggattaatacctaaataaataaatgaataaatcaaacaaactaacagatacatacatacatagataaacaagaaaacaaacaaaactaaacaaataaaaggcggGTCAGATTTATGATGTAAATATATGAGTGAATACCCGGCCTGTGTATATTAAACATACGACACGTGTCCGTGTGAAAGGTCACGGACCCCTGCAGGACACGGCCCACCGCCCCCCGAGACCCGGCCTCTCACACCTCCTGGAAGGATGCACAGTTCTTCCTGTTGTTTCCAAGACAGCtgccaattacttaattggtctaattggcTAATTAATTAGCAGACAAGCTTGGCACCTGGAATcaaattaatcttatttttcCCCATCAGCTGTAAAGgactttaaaacaatgtcagtTAAGTGTCTAACTGACAGCGTGATTAGAGTAATGGAGGCAGCGCCTGTCCAGCAGGAGCAGCGCAGGGCTGAACAATGGTCCGACAGGCAACCCGCTGAATCAGGTAGTCAAGACACGGTGCTGCTGTACAGGGGAGTGCCAGCTGCGCGAATGCCAACCTCCCCGCAAGGCTGCCGCCCAGCGTTGTTGACATGTCAGATCTGGCACTGACAGGGCACAGACCAGACACTGGGCACAAACCAGAAACTGGACACTGACAGGGCACAGACCAGACACTGGGCACAAACCAGAAACTGGACACTGACAGGGCACAGACCAGACACTGGGCACAGACAGGTCACACACCAGACACTGGGTACAGCTGGCACAAACCAGACACTGGACACACACCAGACACTCAGGAGATTGAGCTCACTGTGTCAAACCCGCAGCAGATTAACACAGAGGGGCGCTGTGCTGCCACACAGTTATGCCGGACCTGCTGGCTCAGGGGTGTCGATGCCAGGGCGTTCCCTGGCGCCATCAAACTCATCATTCAAAGTCCCTGAATCCATCCCTCTATGCACTAGATCTCTCTGTATGTGCAGGTATGTACTGAGGGAGGCGCAGCAGCGCGGTGTGTGTCCCGCGGGGGCCCGGCACTGATCCGGCGCTGATCTGGCACTGATGTGGCACAAGGGCGTCACAAAGGGAGAGGGCAGATCCTCCTACCAGGCCAAGTTACAGATTCTCCTCCTGGTTCAGGAAGGATGGGTAACTCCGGAGCCCATTAGGGCCCTTTCTGCTCGGTATAAACGGGAGCATcagcacattttacattactgAGGGGAGAGTTAACCCGTGAGCTGCTGGCTGGTATTCGTGCTCCCTGCGCAGACTGCCTGGATCAGCGTTTTTCCCCATATATAATTACAGGCTGCTATCCATCATATCAGGGAGAGTGCTTTTGTGGCACACCAAAAATTACAGACTAAGCACTTTCACTAATAGAATAAATATTAATCTCTCTTCTTTTATATATTCTCATTTCAGCtggtatatttaaatgtaccctGACAAGTGTGGGAATGCAcagaaagaggaggagaggaagcgAGGGAGAGAAAGACTAAGGAAaccatgaaaacacacaaacaacatgTGGCTGTCGCTGGTCTCCGGCGCAGGGCGAGTGACCGAGCGCGGAGCCGCGTGTGGGAACAGAGCGGATCAAACGCCCCGAGCTGCGCCCGCCTCGTCCACAGGGGTTTCAGGGTATTTACAGCCCCACAAGGGACACCCGAGCTCAGTTAGCCACGTTGCTCTCTGATTGGTCTAATGAACCGATAAGTCGGACGCTCTGTGGCGACGCAGTCCCAAGCGCAGCTACGCACATCCACTGCTCAGCCGGGACAAGAACATGTGATCAGGGTGACTGACGCTGAACACAGTGACTTGACTGAGTGACAGCTGCTGTGGGAACCAATCACAGACAGCACTGTCCCCCCCCCGGGACCGGAgtctgacacagacagacacacacacactctctctcttacaaacacaaacacacacacactcttacatacacactcacccacacacacagacagacacactcacacacacagtcttacatacacacacagacagacacacacacactctcatacaaacacacacacacacactcttacaaacacacacacacactcacacatacacacacgttactcttacaaacacacacacacacacactcttacaaacacacacagacacactctctacaaacacacactctcttataaacacacacacactcttacaaacacacatacagacacactctcttacaaacacacacacagacacacactctctcttacaaacacacacacacactcttacaaacacacacacacacacacagacactctctcttacaaacagacacacacactgctgtcctGTCCTAAATCACACCCCAGCTGCGTCCTCCACAGTGCCACCAGAGCACACTTCTCTCTTGTCtgacagtgtgtgtggtgtggggCGTGACTCTCAGGGTGAGTACCTGTCACcccagacagacatggaggcaCATTTTAGATTATTGTCCCTGAAGGAGTACCGATACGACCCGCTGGGCCTGTGAAACGGGGCGGCGGGCGATACCTTCTCTCCCAGCGGGCAGTACCCCCTGACGAAGTCCTGGCACACGGCGGCCTTGCGGGACACGTAGACGTGGCTGTAGGGGCAGCTACTGTTGTTGCAGATTCCCTTCAGGAAGTACGAGCAGACGGGCATCTGGGAGAGAAACAGAgcggcagagagagagggtcagaggaCAGGAGAGGGACACGGAGACAGACCAGAGAGccactgactgtgtgtgtgtgtcagtgtgtgtgtgtcattgtgcgtgtgtcagtgtgtgtgtgcatatgtgtctgtgtgtgtgtcagtgtgtgtgtgtgacagtgtgtgcgcgagtgtgtatgtgtgtcagtgtgtgactgtgtgtatgcatgtgtgtctgtgtgcgtgtgtgtgtgtcagtgtgtgtgtgtccgtgtgtgtgcgtgtgtgtcagtgtgtgtgacagtgtgtgcgtgtgtgtttgtgtgtgtgtgtcagtgcctctTTGAGTGAGAGCCGGCTGTGGACGCAGGGTCACAGATAAGACCTGCTCTCTGCATATTAAGTCGAGGTCTCAGTCTCTCCAGCATCGCTCTGTGCTAATTAAGAACATAATTACATTGGTAATTGGATTTCCCCAGTGCAGCGCTGCTCGTTAGcttgtttgattgtgtttttgttatatacatctgtgtacatatattatacacacacacattatatatgtgGACAGGGTAGGGTGGGCACCCAGCTGGAATATCATATGAACCCAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38533 True 4412 lncRNA 0.52 4 834458 839109

Neighbor

gene id symbol gene type direction distance location
AMCG00019014 NA coding downstream 96766 728065 ~ 737692 (-)
AMCG00019015 NA coding downstream 110792 712870 ~ 723666 (-)
AMCG00019010 NA coding downstream 164071 669383 ~ 670387 (-)
AMCG00019006 NA coding downstream 224811 594775 ~ 609647 (-)
AMCG00019002 foxh1,LOC108431400,LOC106590409 coding downstream 300065 525755 ~ 534393 (-)
AMCG00019018 rhpn1,LOC106584065 coding upstream 145436 984545 ~ 992405 (-)
AMCG00019019 NA coding upstream 163484 1002593 ~ 1012013 (-)
AMCG00019025 NA coding upstream 255731 1094840 ~ 1095844 (-)
AMCG00019023 NA coding upstream 276475 1115584 ~ 1133886 (-)
AMCG00019026 NA coding upstream 299112 1138221 ~ 1158854 (-)
G30784 NA non-coding downstream 101045 712712 ~ 733413 (-)
G30760 NA non-coding downstream 310462 522119 ~ 523996 (-)
G30612 NA non-coding downstream 420176 413888 ~ 414282 (-)
G30594 sspo non-coding downstream 566531 266073 ~ 267927 (-)
G30593 NA non-coding downstream 574393 259434 ~ 260065 (-)
G30809 NA non-coding upstream 48540 887649 ~ 894190 (-)
G30823 NA non-coding upstream 211976 1051085 ~ 1053885 (-)
G30871 NA non-coding upstream 387721 1226830 ~ 1232565 (-)
G30900 NA non-coding upstream 518199 1357308 ~ 1358163 (-)
G30932 NA non-coding upstream 666455 1505564 ~ 1505917 (-)
AMCG00019007 LOC106613553,LOC108443229 other downstream 200165 614398 ~ 634293 (-)
G30729 NA other downstream 334269 498732 ~ 500189 (-)
AMCG00018991 NA other downstream 357362 473449 ~ 477096 (-)
AMCG00018992 NA other downstream 379694 452955 ~ 454764 (-)
AMCG00018988 NA other downstream 496825 225374 ~ 337633 (-)
G30849 NA other upstream 335415 1174524 ~ 1174983 (-)
AMCG00019024 NA other upstream 335922 1175031 ~ 1177566 (-)
AMCG00019031 LOC107567020,LOC106939174 other upstream 400602 1239711 ~ 1260637 (-)
AMCG00019034 NA other upstream 482505 1321614 ~ 1323596 (-)
G31035 NA other upstream 866790 1705899 ~ 1710543 (-)

Expression


Co-expression Network