G31217


Basic Information

Item Value
gene id G31217
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2404126 ~ 2409887 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU39092
CAGCACCAACtaacactggaaaaaaaaaaaaagaaagaaagtgagcTGGTCTCTTAAGTCAGTGGAGGGAGACTGGATCTCGGTTTACCTGAAAGAATGGAGGTGGAGGTTCACCCATTCTCTCTCAATATAGATCGGTGGTAGCCATGCTTTTCTTTACTGCAATGAACCCCCCCCAGAAAAAGCAGTCACCACACTTGTAAACAGTGTCTAAATCCCACAGCGCGAGGCCCGGACAATAATGGAGCAACACAGGAGTCTAGaaaggattttattatttttattactctTTACAACCAGCAGGACGCTCTCAGTTATGGATCACCTGTACAACTTGTAGGGGGGGAACCCCaacccaaaaacaaacaaaaaaaacacactttcctGCAAGATTTAGAAAAGGATTAGTTTGACGTCTTAATACTGATTGGAACGGGGGTCTGGCTCCAGCCCTCACCAGCCACATCTTCTTCACGGCGTAACTGAGCCCATTTAGTGCGGCAGGAGAAGCGCGGCTCTCTGCGATGTGAATCTACAGTACAGAGAAGTACACGACACGCCAAACTGGCGCCCCCGATTCGCATCAGAGCTcagagagaggagaaacagaCGAGCcagcagaacaacaacaaccaaaaaaaagctGCGTTAAATTTGCCCGCAGCAcgtttaaatgaataaatatatccGTCCAGATGTGGGGATGGAAAGCCAATCCCAGAAGACTGTGGTTCTCAGGCACTGGAATCTAAACCCCCGCTAGCttacacatttttttagttttcttttgcctttaattataatttgccacataagttttgtttttgtttgtttgttgtgaaatGCCTCGGAGGGATGCCCTGGATAAAGCTGCTATTCCCAAACTGCGGTGAAGAATGAGGCCTGCAATTACCCTGCCTCCCGGTTCTCACTCCGCCTTCCTTTGCCAACACGGTACGGGCACCATTATGttatcaaaaacataaaaccccAACAACAGATCGTTTTTTTCCTGGACAAGAACAATGTATTATTGCAACAGAACCTGCAAAACACATCGATACACCCCGTGGTGCCAGGAGTCAGTGGAGAGACggctgcttgtgtgtgtgggcgTCCGCAGGACCAGAAGGCCAAGTGATTCAACTCTGACtacttcattattatcattataaaaagttaattactCTTCAGAAGAGAAGGATGAGATTTTTGGTTACAGATCGGAAGCCTACATTTTGTTGATTCCATTTCTTTCCACTAATAAACCACATCGAACTGGATTAGTCTCGGGGGCCATATTAAGATCAGGCTAGTTCCTCTTTCTTGTTGGTTTTGGTGTTAGTACACTTCTATGTAAACCcccagctgcagtcaggagagGAGGACcgggggaggagggaggattTAGTGCCCTTCAACACAAAATGGGACACGAGGACAGGATGCaataatgcttttgttttctttccccaaaCCTCCAACCcaaccaaaaaactaaacacagaaAGAGTTACACATAAAAGACACGTACCCTAGAGTGCCTCACAGGTTCAAGCTTTGGCAAACGCTACTGTCATGTACATCCAAGCGGTCTCAGTAAGTCACAGCTGTAACTGtatcttcctctctctccctttccctctgtACACGCCTTCCTAATACACTGAAATCACAACACagttcatatttatatagcgcctttcgcTCTCTTTAATGTAGCCTGGGTGCTGTACATTGATTAGAGCCccaccctcctctctctgtctgtctcacgAGTCCCACAAGGAGCAGGAgttgcagtccagtccagttgcTGGGCAGTGGGGGGATCCTGCACTTTTTCGGCACCCCCATGCAGACAATAATACGCACAGACTGCTGTTCAGCTGCCTGTCGGGCCGGTTGTCCACGAAAAGGCCACACTCTAGCTCCGCCTCCGTGTCTGACGtgatctgtgcttttttttagaaaacaaacgTAGCAACTCCAGGGATGAGTCTGTAGCACAGGAGCCGTAAACCCGCGGGTCAGACAGAGCCTCGGCTGGCTATTGGCACCACAGCACgtgccccctctccctcccatcACATTACAAGCTGACTTTTGGGAAAGTAGAGTCCTGGCTGGCCCTCGGTCTTTGCTGGGGGTGTCTCAGCTGAAGACTCTCGTCCTTATTCACCCTCTCATCAGCACAGACAGAGCTTTCGGCTCTCGAGTCGGAGAGGGGGTGGGCGTCTGTCCCGCGGGGCTGTGAGAGAGATTACTGCCCTCCTGTGGATCTTGCTTCATGTCAAAAACaagataattgtattattcttttccTTCAAAACGTGTCCATGCGGCATGCATAGGTTGCAAAAATCaaaccaagaaagaaaaaaaaaaaaaaatccctttgcCAGCTGGGCGTCTCATGTCAAAGTAGCGTTTTCaacgttttttatttattattattattattattttagaacacAATTTGTACGTCTCTAAGTGGACACCGCTATGTGATGACATGGTGGACAAGCACGCACACAGGGACTACGAAGTACAATCAGACGCCAGCAACGCCGGGCTGCCGCTGCGCAGACACTGTGTGATTAAGGCtcacatttcagaaaaacaaaacagaaaaacaaaacacaccaaaacCAAACCGGGCAGAGTCGCTCACACGTGGCCACTGGGCCGCTTCAGAGATGGGGAACAGTGCCAGAGGGACCCGCTATCTCAGCACAGAAGGGTAGTCACTGCTCACCGTGAGTCACACTTTCTTAAGTCAGTGCGGCCTTCGTTCTCCCAGGGGGGGCTCCAACTTTGGCCTGATGCCGTGGCCCACCGCTGCCACCGCCACAGAGAAACATAAAAGAGAAACGCCCAGAACAAAGCGCCACTGCTTCCTGACCCCCCCAGTGAAAGGGTGGCAGAACCCTCTCATTTCTGTCAAAGAACAACAAGAGAAACAAActccaaagcatttttttccttcattttccaTCACAGTACAATCATCAGATCAAGTGGCTGATTGAGAAATTATcagttgttttttctattaACGCCCAAGGCTGGGGATCCTAACAGGCTTGCAGAGGCTTCATTCCCCACAATCCCCCATTCTCAGTGGCGGCCCGTCTCCCTGCACACCGGGGCGACTGCAGACCGTCCAGTTACTGAACAAGCAGCGTTCTGGAGGCAGTTTAGCAAAactctcttccctctcttttAGCGACTCACATATACAGTTGAGCTGATTTGACAGGGTCAGCAAACTGACTGTACGTGATTCTAAGTTACCAAACTCTTTTTGCTACACATTTCTgctacatttctttctttctctttagtGCACTTGGTCATGCTTGTGGTTAAAGACAGTAGATTGAAACGATTGAGCACGATTGCTCATTTGCCCGGGGCTGTCTGGCAGTCGAGAGTGTGCCGTGGATTGCCAGCATTCCCCTCGAATACAGCCAGAGCCACAGCACAACTTCATGATGCGGTGGGTGACAGTGGAGTAATAATACCCCCCAGTGATAGTGCTGCACTCAGGGGACTTTGTGCAAGATGGACAAGGATgactttttaatacattaaagagTGAATTTGGCTGTGGTGCACAATACGTTTGGCATGGAAACAGCTTCTAAAAGCCCATGACACACCGAGCAACCTCTCCCACTGGACTGGCCAGCTCAGTGACAGCCTTCAGCTTTACTGCTCAGAACCTCTCCGCAATGAACCAATCTGTTAATTATCTCACACGGCAGCCTGGGTTACAGCGAACACCGAACGAACACGGCACAGACATACGGACCGTGGGGGGGTGGCGGGGCGGGGAGGCCGACATGTTGTAACACCTATTAAAATACAGCCCGATGCTTCTACCGGAtctagtttttcttttcagtgtgaCAGAGTGGAAATGCTTCACTTCTCCACACTGGCTACAAATAATAAGCACACGAAAATAAAAAACCAACGCAAAGATCAGCACATTGTGAATGCTGAGGGTTCAGAGGGATGGGGGTTTTCTCTTGCCCTGAACACCCCAGTGGCAGTGACTCATCGCAGCTTGGTGATGCTGTGGAGAGTGCCCTCACCTACCTCCTGTGTTTATCTGGACAACTGCAGATTATTTTAGTCTGTTATTCTGTTAATTACGTATCCTATAGTCAAGGTACCTTCTGTGTTATAAATACAAGAGGACAAGTTCAGATTTCTATCAGGAATAAAAGCACAGTTTGCCTGTTTGACGAACAGCAGCACCAATGAGCCCTCCAGCTCTCCTACATCCTGCCTGTACGATGGAGCACTAAAAGGGCCGATGCTGTCACTGGCGCCATCTTGTGGCTGGCCAGGGTTTCGGCACCTGCTGCGCTGACTGCACTGCAGAGGGGTGGCTGTGGGGCACTGGGCTGTAGTCAGTTATGATACAGACAAACCTGCACCATCAAACAGGAGTGCAGTGCGAACGCCAGCGGACTGGAGCACAGATCACATGCCTGGAGGAGGAGGTCAGACCCGGCCGTGTCACCACGTCAGAGtgaaaataatcatgtaatGCAGACATTTCCGGAGCAGTGACTCTACGGGGCTGCATTAGAGCCTCTTGCGTTGCCACAGGCGGAGGGGGGCGTAGACGGCGAGCGCATGAGGTCAGAGGCGGGCGGCACGCCAGCGGCAGTCAAACACAGCACTGGCTGTTCTCTTCGGGCCAGGCTTTCCCATAACGCAGCGAGGAATGTGGCACTGCTGTAACCTCAAGGGCCCCATTCACTCAGACTCGCACACACCCGTCAGCTTTAtaatggggggaaaataaatgttttccagaTACTGGCACTCGTTTCTGTTCAGCCTCTCTCTAATGTCTCGAAGCTCCCCCTTGTCTGAACTCACCATGCCCACTGACTCGTACTTTACATCGCCCTGCAAAGCATtgctgtgaaattattttgGGGAGGGCGCTATATATCAGATAAAGATTGATTGATGGATCAATGGACAGAACTATAAACACCTGCTTGCAGTCTTTTCAGTTCCCATGTCCCACTGACGGCGATGGGGAGAGGAGCGGTGGGGGTGCAGTCCCAGAGAGGTGGCTTCtgggagagaggagagctgGCGTTTTTGACAAGGGAGAACCTTATTTGAATGTTTAGTGGTGACCATGTCCAACATGTCGGCAAAGGCAGAGTCAAAGGGGCTCGAGGACGTTGGCCGTGTGTCCTCCGAAGCGCAGGGTCAGTCTGGACACACCGCTGTAAACAACTGGCAGCCCCGCCTGTGAGGAGGCCAGGGAGAAATACCTTCCCCTTCAGTCACAGCTGCGAGATTCTGCTTCCATCGTTCCTGCTGACGTAGGACTACAGGTACCAGCATGCTTTAGGATGTgagttttttaaaaaaatttaacactagtagtaataataagcATGCTTCCTCGTTGGTGAAACTAATGTTATGAGTTCACTGTACAGCATATACAGGGATTGGTCTGGCGTTTCGTGGCCTCTGTGGTCAGGAGGGCTTTGATTTCGAACCCCACACTCGGGCGTGAATCAGTAGGAAGCCGGGGGGGTTTTGTGCTTGCATGCTTCAGATCCAGCCACTCTGCAGGCTGGGAGTGATTCATTATAGCCGTGGTTCGTGATGATGAGAGCTGAAGGTGCTCTCCGCTCCCCGATGAGCAGCAGCCCAGCATGCTGATCTCCAGGGGTGCGACGGGGGGGTGTTGGGATGATGGCGGTCTGGGGNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39092 True 5762 lncRNA 0.49 1 2404126 2409887

Neighbor

gene id symbol gene type direction distance location
AMCG00019082 chpf2,LOC106590171 coding upstream 1997 2391707 ~ 2402129 (+)
AMCG00019081 abcf2,LOC106590172 coding upstream 25752 2375995 ~ 2378374 (+)
AMCG00019076 NA coding upstream 34884 2365606 ~ 2369242 (+)
AMCG00019075 NA coding upstream 112455 2280642 ~ 2291671 (+)
AMCG00019072 NA coding upstream 215467 2177927 ~ 2188659 (+)
AMCG00019083 NA coding downstream 77455 2487342 ~ 2488988 (+)
AMCG00019086 NA coding downstream 81611 2491498 ~ 2501639 (+)
AMCG00019090 NA coding downstream 209348 2619235 ~ 2636403 (+)
AMCG00019088 NA coding downstream 248666 2658553 ~ 2665864 (+)
AMCG00019095 wnt9a,LOC106599874 coding downstream 435493 2845380 ~ 2850000 (+)
G31141 NA non-coding upstream 194937 2188968 ~ 2209189 (+)
G31143 NA non-coding upstream 211918 2191421 ~ 2192208 (+)
G31117 NA non-coding upstream 226770 2177148 ~ 2177356 (+)
G31104 NA non-coding upstream 304974 2097181 ~ 2099152 (+)
G30943 NA non-coding upstream 320857 2038647 ~ 2083269 (+)
G31351 NA non-coding downstream 667029 3076916 ~ 3077156 (+)
G31380 NA non-coding downstream 729800 3139687 ~ 3165672 (+)
G31430 NA non-coding downstream 934868 3344755 ~ 3345244 (+)
G31432 NA non-coding downstream 943453 3353340 ~ 3388685 (+)
G31461 NA non-coding downstream 1454302 3864189 ~ 3864604 (+)
G31110 NA other upstream 256563 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 518575 1861829 ~ 1885551 (+)
AMCG00019046 NA other upstream 798581 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 1082633 1318622 ~ 1321493 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other upstream 1150391 1253366 ~ 1253735 (+)
AMCG00019089 NA other downstream 110217 2520104 ~ 2618052 (+)
AMCG00019096 LOC107727496 other downstream 684565 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 780725 3190612 ~ 3210890 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 1909709 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 3520817 5930704 ~ 5939597 (+)

Expression


Co-expression Network